Wall clock time and date at job start Tue Mar 31 2020 05:47:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38396 * 120.11106 * 2 1 4 4 C 1.37701 * 119.97519 * 179.97438 * 3 2 1 5 5 C 1.38929 * 120.78629 * 0.31336 * 4 3 2 6 6 C 1.39251 * 118.87237 * 359.55107 * 5 4 3 7 7 C 1.37965 * 120.24234 * 0.30084 * 6 5 4 8 8 C 1.50698 * 119.82558 * 179.97438 * 7 6 5 9 9 O 1.36129 * 111.24365 * 179.38243 * 5 4 3 10 10 C 1.43763 * 109.28597 * 18.63167 * 9 5 4 11 11 H 1.09005 * 110.90185 * 90.82541 * 10 9 5 12 12 C 1.50696 * 110.74577 * 214.09336 * 10 9 5 13 13 O 1.21284 * 120.00183 * 358.38920 * 12 10 9 14 14 N 1.34776 * 120.00271 * 178.38129 * 12 10 9 15 15 C 1.46499 * 120.00348 * 180.02562 * 14 12 10 16 16 H 1.09000 * 109.47197 * 34.99139 * 15 14 12 17 17 C 1.53005 * 109.46437 * 274.99648 * 15 14 12 18 18 C 1.50701 * 109.47260 * 155.00133 * 15 14 12 19 19 H 1.08002 * 119.99761 * 359.97438 * 18 15 14 20 20 C 1.37871 * 119.99694 * 180.27562 * 18 15 14 21 21 N 1.31514 * 120.00482 * 359.71466 * 20 18 15 22 22 Si 1.86801 * 119.99746 * 179.72062 * 20 18 15 23 23 H 1.48494 * 109.47230 * 359.97438 * 22 20 18 24 24 H 1.48505 * 109.47301 * 119.99669 * 22 20 18 25 25 H 1.48498 * 109.47430 * 239.99516 * 22 20 18 26 26 C 1.51645 * 132.18995 * 180.34487 * 4 3 2 27 27 H 1.08994 * 109.47070 * 270.00114 * 1 2 3 28 28 H 1.09000 * 109.46757 * 30.00183 * 1 2 3 29 29 H 1.08999 * 109.46316 * 149.99985 * 1 2 3 30 30 H 1.07995 * 120.01762 * 359.97438 * 3 2 1 31 31 H 1.08007 * 119.87105 * 180.32149 * 6 5 4 32 32 H 1.09007 * 109.47256 * 89.99601 * 8 7 6 33 33 H 1.08993 * 109.47737 * 210.00015 * 8 7 6 34 34 H 1.09005 * 109.47160 * 330.00226 * 8 7 6 35 35 H 0.97000 * 119.99698 * 359.97438 * 14 12 10 36 36 H 1.08996 * 109.47069 * 60.00420 * 17 15 14 37 37 H 1.09004 * 109.46658 * 179.97438 * 17 15 14 38 38 H 1.08995 * 109.47438 * 299.99560 * 17 15 14 39 39 H 0.96995 * 120.00207 * 179.97438 * 21 20 18 40 40 H 1.08997 * 110.93995 * 46.13878 * 26 4 3 41 41 H 1.09001 * 110.94524 * 282.44362 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2013 1.1972 0.0000 4 6 3.5783 1.1939 0.0005 5 6 4.2866 -0.0012 -0.0055 6 6 3.5804 -1.2014 -0.0025 7 6 2.2007 -1.1957 0.0000 8 6 1.4459 -2.5000 0.0027 9 8 5.6295 0.2213 -0.0174 10 6 5.8916 1.5676 0.4135 11 1 6.0386 1.6088 1.4928 12 6 7.0863 2.1359 -0.3080 13 8 7.6955 1.4530 -1.1040 14 7 7.4779 3.4032 -0.0689 15 6 8.6390 3.9559 -0.7708 16 1 8.6777 3.5527 -1.7827 17 6 9.9170 3.5749 -0.0207 18 6 8.5212 5.4570 -0.8321 19 1 7.6666 5.9500 -0.3927 20 6 9.5012 6.2005 -1.4547 21 7 10.5417 5.6002 -1.9901 22 14 9.3513 8.0607 -1.5376 23 1 8.0972 8.4866 -0.8660 24 1 10.5146 8.6820 -0.8549 25 1 9.3226 8.4922 -2.9582 26 6 4.5994 2.3151 0.0074 27 1 -0.3633 0.0000 1.0276 28 1 -0.3633 0.8900 -0.5139 29 1 -0.3632 -0.8900 -0.5139 30 1 1.6635 2.1337 -0.0004 31 1 4.1147 -2.1400 -0.0018 32 1 1.2658 -2.8136 1.0310 33 1 0.4927 -2.3693 -0.5095 34 1 2.0333 -3.2608 -0.5115 35 1 6.9905 3.9495 0.5673 36 1 10.0023 2.4892 0.0237 37 1 10.7810 3.9858 -0.5431 38 1 9.8784 3.9781 0.9912 39 1 11.2310 6.1233 -2.4284 40 1 4.3399 3.0738 0.7457 41 1 4.7000 2.7566 -0.9840 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000172917198.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:01 Heat of formation + Delta-G solvation = -73.643720 kcal Electronic energy + Delta-G solvation = -22415.988332 eV Core-core repulsion = 19066.950418 eV Total energy + Delta-G solvation = -3349.037913 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.44102 -40.45615 -38.98913 -36.76506 -34.63856 -34.14440 -33.00234 -32.22668 -30.59663 -27.92341 -27.62941 -27.34207 -24.61068 -23.09004 -22.93946 -21.52991 -21.25820 -19.30149 -18.23223 -17.94834 -17.56468 -17.14535 -16.57615 -15.96764 -15.85428 -15.59078 -15.06641 -14.99993 -14.59442 -14.45337 -14.28406 -13.91419 -13.75230 -13.61267 -13.50747 -13.15329 -13.01268 -12.99502 -12.84193 -12.81285 -12.69652 -12.30640 -12.14394 -12.12184 -11.81206 -11.60352 -11.12834 -10.79912 -10.61876 -9.88687 -9.71894 -8.95588 -8.19096 -6.37168 0.26151 0.36194 1.45020 1.45768 1.53499 1.58001 1.74868 2.39252 2.54905 2.75190 3.11909 3.31028 3.45929 3.79498 3.87310 3.96517 3.98346 4.14664 4.29406 4.44920 4.60023 4.68803 4.71368 4.73919 4.79495 4.82780 4.88399 4.97486 5.04814 5.05630 5.18232 5.26284 5.35670 5.37216 5.41120 5.54251 5.62209 5.66459 5.74513 5.85764 6.05184 6.18431 6.69371 6.81488 7.27048 7.42318 8.87840 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.030665 B = 0.003199 C = 0.002963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.865158 B = 8751.623828 C = 9446.497505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.119 4.119 3 C -0.068 4.068 4 C -0.183 4.183 5 C 0.069 3.931 6 C -0.151 4.151 7 C -0.057 4.057 8 C -0.114 4.114 9 O -0.311 6.311 10 C 0.070 3.930 11 H 0.141 0.859 12 C 0.503 3.497 13 O -0.589 6.589 14 N -0.690 5.690 15 C 0.271 3.729 16 H -0.003 1.003 17 C -0.136 4.136 18 C -0.544 4.544 19 H 0.080 0.920 20 C 0.012 3.988 21 N -0.919 5.919 22 Si 0.975 3.025 23 H -0.256 1.256 24 H -0.279 1.279 25 H -0.286 1.286 26 C -0.089 4.089 27 H 0.082 0.918 28 H 0.073 0.927 29 H 0.082 0.918 30 H 0.150 0.850 31 H 0.129 0.871 32 H 0.086 0.914 33 H 0.091 0.909 34 H 0.069 0.931 35 H 0.410 0.590 36 H 0.009 0.991 37 H 0.068 0.932 38 H 0.046 0.954 39 H 0.266 0.734 40 H 0.137 0.863 41 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.479 -8.760 8.635 25.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.119 4.119 3 C -0.086 4.086 4 C -0.183 4.183 5 C 0.024 3.976 6 C -0.169 4.169 7 C -0.057 4.057 8 C -0.170 4.170 9 O -0.224 6.224 10 C 0.011 3.989 11 H 0.158 0.842 12 C 0.288 3.712 13 O -0.469 6.469 14 N -0.340 5.340 15 C 0.168 3.832 16 H 0.015 0.985 17 C -0.195 4.195 18 C -0.583 4.583 19 H 0.098 0.902 20 C -0.188 4.188 21 N -0.558 5.558 22 Si 0.800 3.200 23 H -0.179 1.179 24 H -0.205 1.205 25 H -0.212 1.212 26 C -0.126 4.126 27 H 0.100 0.900 28 H 0.092 0.908 29 H 0.101 0.899 30 H 0.167 0.833 31 H 0.147 0.853 32 H 0.105 0.895 33 H 0.109 0.891 34 H 0.088 0.912 35 H 0.247 0.753 36 H 0.028 0.972 37 H 0.087 0.913 38 H 0.065 0.935 39 H 0.075 0.925 40 H 0.155 0.845 41 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -21.683 -9.337 7.917 24.900 hybrid contribution 0.902 1.052 -0.220 1.403 sum -20.782 -8.286 7.697 23.659 Atomic orbital electron populations 1.20841 0.88260 1.03926 1.03371 1.20045 0.97875 0.91520 1.02441 1.20484 0.90735 0.99503 0.97875 1.20847 0.95506 0.93540 1.08447 1.19986 0.82506 0.96235 0.98838 1.20338 0.93897 0.95217 1.07466 1.19807 0.91449 0.97106 0.97326 1.20943 1.00376 0.92016 1.03694 1.86887 1.21322 1.31074 1.83153 1.23298 0.94220 0.81007 1.00419 0.84166 1.20686 0.85294 0.82651 0.82525 1.90677 1.57904 1.60536 1.37808 1.46106 1.31897 1.11803 1.44227 1.18420 0.81676 0.92930 0.90205 0.98532 1.21927 1.01354 0.96400 0.99818 1.21557 1.07943 0.90610 1.38142 0.90224 1.25845 0.94522 1.04076 0.94310 1.70068 1.10972 1.37534 1.37194 0.85243 0.78683 0.78464 0.77616 1.17938 1.20493 1.21177 1.21730 0.88933 0.97393 1.04591 0.89968 0.90781 0.89902 0.83251 0.85289 0.89518 0.89074 0.91208 0.75347 0.97170 0.91344 0.93495 0.92528 0.84450 0.90079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.12 9.61 71.24 0.68 -0.43 16 2 C -0.12 -2.14 5.89 -19.83 -0.12 -2.25 16 3 C -0.07 -1.39 9.70 22.18 0.22 -1.17 16 4 C -0.18 -4.77 6.27 -19.52 -0.12 -4.90 16 5 C 0.07 2.14 7.04 22.68 0.16 2.29 16 6 C -0.15 -3.89 9.71 22.45 0.22 -3.67 16 7 C -0.06 -1.12 5.87 -19.93 -0.12 -1.23 16 8 C -0.11 -1.39 9.60 71.24 0.68 -0.70 16 9 O -0.31 -11.61 10.39 -76.79 -0.80 -12.40 16 10 C 0.07 2.23 4.05 30.43 0.12 2.35 16 11 H 0.14 3.48 8.14 -2.38 -0.02 3.46 16 12 C 0.50 21.34 7.10 87.66 0.62 21.96 16 13 O -0.59 -31.81 16.23 15.19 0.25 -31.56 16 14 N -0.69 -28.43 5.06 -446.09 -2.26 -30.68 16 15 C 0.27 14.10 2.56 44.25 0.11 14.21 16 16 H 0.00 -0.20 7.58 -2.39 -0.02 -0.22 16 17 C -0.14 -6.98 9.26 71.98 0.67 -6.31 16 18 C -0.54 -28.31 8.72 25.60 0.22 -28.09 16 19 H 0.08 3.79 7.74 -2.91 -0.02 3.76 16 20 C 0.01 0.66 5.31 84.65 0.45 1.11 16 21 N -0.92 -52.83 11.33 21.45 0.24 -52.59 16 22 Si 0.98 41.39 29.54 68.60 2.03 43.41 16 23 H -0.26 -10.08 7.11 99.48 0.71 -9.37 16 24 H -0.28 -11.64 7.11 99.48 0.71 -10.93 16 25 H -0.29 -12.19 7.11 99.48 0.71 -11.48 16 26 C -0.09 -2.29 6.63 30.73 0.20 -2.09 16 27 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 28 H 0.07 0.66 8.09 -2.39 -0.02 0.64 16 29 H 0.08 0.65 5.95 -2.39 -0.01 0.64 16 30 H 0.15 2.22 8.06 -2.91 -0.02 2.20 16 31 H 0.13 3.10 8.06 -2.91 -0.02 3.08 16 32 H 0.09 0.84 8.14 -2.38 -0.02 0.82 16 33 H 0.09 0.78 5.94 -2.39 -0.01 0.76 16 34 H 0.07 0.83 8.08 -2.38 -0.02 0.81 16 35 H 0.41 13.43 8.54 -92.71 -0.79 12.63 16 36 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 37 H 0.07 3.83 6.08 -2.38 -0.01 3.82 16 38 H 0.05 2.16 8.14 -2.39 -0.02 2.15 16 39 H 0.27 14.40 8.31 -92.71 -0.77 13.63 16 40 H 0.14 2.41 8.14 -2.39 -0.02 2.39 16 41 H 0.08 2.36 7.92 -2.39 -0.02 2.34 16 Total: -1.00 -74.22 340.34 3.72 -70.49 By element: Atomic # 1 Polarization: 21.99 SS G_CDS: 0.25 Total: 22.24 kcal Atomic # 6 Polarization: -12.92 SS G_CDS: 4.01 Total: -8.91 kcal Atomic # 7 Polarization: -81.26 SS G_CDS: -2.01 Total: -83.27 kcal Atomic # 8 Polarization: -43.42 SS G_CDS: -0.55 Total: -43.97 kcal Atomic # 14 Polarization: 41.39 SS G_CDS: 2.03 Total: 43.41 kcal Total: -74.22 3.72 -70.49 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172917198.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.150 kcal (2) G-P(sol) polarization free energy of solvation -74.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds