Wall clock time and date at job start Tue Mar 31 2020 07:06:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 110.78166 * 2 1 4 4 C 1.55159 * 110.71538 * 236.76511 * 2 1 3 5 5 C 1.55131 * 101.48638 * 205.96974 * 4 2 1 6 6 N 1.47434 * 104.72087 * 37.29280 * 5 4 2 7 7 C 1.34776 * 125.64606 * 155.82301 * 6 5 4 8 8 O 1.21589 * 120.00298 * 5.10369 * 7 6 5 9 9 C 1.47527 * 119.99748 * 185.11203 * 7 6 5 10 10 C 1.39670 * 120.19965 * 351.80755 * 9 7 6 11 11 C 1.37831 * 119.92206 * 179.97438 * 10 9 7 12 12 C 1.38573 * 120.32019 * 0.02562 * 11 10 9 13 13 C 1.38023 * 120.40696 * 359.97438 * 12 11 10 14 14 C 1.38838 * 120.06924 * 0.02562 * 13 12 11 15 15 O 1.35522 * 120.16106 * 180.27329 * 14 13 12 16 16 C 1.34814 * 116.99584 * 352.98556 * 15 14 13 17 17 H 1.07995 * 120.00615 * 354.06776 * 16 15 14 18 18 C 1.38703 * 119.99450 * 174.07071 * 16 15 14 19 19 N 1.31513 * 120.00403 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 119.99708 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47249 * 89.99896 * 20 18 16 22 22 H 1.48500 * 109.47027 * 210.00203 * 20 18 16 23 23 H 1.48506 * 109.47206 * 329.99908 * 20 18 16 24 24 C 1.47020 * 108.70114 * 335.55619 * 6 5 4 25 25 H 1.09005 * 109.46778 * 298.20990 * 1 2 3 26 26 H 1.08997 * 109.47280 * 58.21279 * 1 2 3 27 27 H 1.09000 * 109.46951 * 178.21651 * 1 2 3 28 28 H 1.09004 * 109.46990 * 181.78954 * 3 2 1 29 29 H 1.09000 * 109.47092 * 301.78890 * 3 2 1 30 30 H 1.08996 * 109.47193 * 61.78844 * 3 2 1 31 31 H 1.08997 * 111.00670 * 324.20611 * 4 2 1 32 32 H 1.08997 * 111.00865 * 88.02208 * 4 2 1 33 33 H 1.09004 * 110.49548 * 278.45470 * 5 4 2 34 34 H 1.08996 * 110.34644 * 156.05613 * 5 4 2 35 35 H 1.07997 * 120.03776 * 0.02562 * 10 9 7 36 36 H 1.07999 * 119.83645 * 179.97438 * 11 10 9 37 37 H 1.08000 * 119.79740 * 179.97438 * 12 11 10 38 38 H 1.07992 * 119.96958 * 179.97438 * 13 12 11 39 39 H 0.97002 * 120.00317 * 179.97438 * 19 18 16 40 40 H 1.08998 * 109.87887 * 120.70461 * 24 6 5 41 41 H 1.08998 * 109.87778 * 241.71197 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0729 1.4304 0.0000 4 6 2.0788 -0.7954 -1.2139 5 6 3.4665 -1.2456 -0.6864 6 7 3.2445 -1.5508 0.7389 7 6 3.9923 -2.3837 1.4895 8 8 4.9970 -2.8855 1.0234 9 6 3.5919 -2.6866 2.8767 10 6 2.5410 -1.9863 3.4734 11 6 2.1713 -2.2744 4.7696 12 6 2.8377 -3.2561 5.4854 13 6 3.8780 -3.9564 4.9089 14 6 4.2642 -3.6797 3.6043 15 8 5.2817 -4.3700 3.0345 16 6 5.9733 -5.2095 3.8311 17 1 5.7706 -5.2377 4.8914 18 6 6.9452 -6.0371 3.2886 19 7 7.1918 -6.0032 1.9972 20 14 7.9040 -7.1998 4.3923 21 1 7.1946 -8.5018 4.4748 22 1 9.2616 -7.4106 3.8287 23 1 8.0181 -6.6113 5.7510 24 6 2.0760 -0.7913 1.2072 25 1 -0.3633 0.4858 0.9057 26 1 -0.3634 0.5413 -0.8735 27 1 -0.3633 -1.0272 -0.0320 28 1 3.1621 1.4057 -0.0321 29 1 1.6956 1.9622 -0.8735 30 1 1.7476 1.9425 0.9055 31 1 1.4451 -1.6535 -1.4376 32 1 2.1842 -0.1520 -2.0873 33 1 4.1946 -0.4415 -0.7931 34 1 3.8030 -2.1362 -1.2171 35 1 2.0183 -1.2206 2.9196 36 1 1.3588 -1.7317 5.2298 37 1 2.5412 -3.4746 6.5007 38 1 4.3927 -4.7197 5.4733 39 1 7.8718 -6.5817 1.6179 40 1 1.3130 -1.4759 1.5774 41 1 2.3737 -0.1045 1.9995 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000173674701.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:19 Heat of formation + Delta-G solvation = -14.009536 kcal Electronic energy + Delta-G solvation = -23389.122788 eV Core-core repulsion = 20042.670806 eV Total energy + Delta-G solvation = -3346.451981 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.20745 -38.82993 -37.13006 -36.32325 -33.28724 -32.31022 -31.23504 -29.05990 -28.89156 -27.49214 -26.39065 -25.35665 -23.69989 -21.86529 -21.43093 -19.47507 -19.13449 -17.90950 -16.95438 -16.22617 -15.92792 -15.03060 -14.72863 -14.35300 -14.31672 -14.12548 -13.94517 -13.81077 -13.37684 -13.02114 -12.84409 -12.63534 -12.52925 -12.27257 -11.95631 -11.83860 -11.67423 -11.61916 -11.29675 -11.09885 -10.96192 -10.87868 -10.75503 -10.58493 -10.47201 -10.04428 -9.54857 -8.87033 -8.80087 -8.22597 -8.14372 -7.26065 -6.42138 -4.01601 1.77175 2.36529 3.13490 3.14364 3.19230 3.49015 3.74827 3.95891 4.32298 4.54023 4.59515 4.75806 5.12098 5.13975 5.14680 5.22788 5.32100 5.44919 5.49041 5.50568 5.56581 5.59127 5.69520 5.75538 5.81871 5.85092 5.92752 6.00382 6.04269 6.09073 6.13995 6.20641 6.27947 6.61244 6.64939 6.85448 6.99182 7.11670 7.29751 7.32155 7.74930 7.95149 8.12414 8.97747 9.09399 9.71123 10.72220 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.022273 B = 0.004653 C = 0.003968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.838963 B = 6016.101778 C = 7055.083929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.083 4.083 3 C -0.137 4.137 4 C -0.124 4.124 5 C 0.111 3.889 6 N -0.628 5.628 7 C 0.571 3.429 8 O -0.501 6.501 9 C -0.223 4.223 10 C -0.075 4.075 11 C -0.232 4.232 12 C -0.052 4.052 13 C -0.239 4.239 14 C 0.189 3.811 15 O -0.127 6.127 16 C -0.402 4.402 17 H 0.093 0.907 18 C 0.044 3.956 19 N -0.835 5.835 20 Si 0.941 3.059 21 H -0.272 1.272 22 H -0.276 1.276 23 H -0.266 1.266 24 C 0.106 3.894 25 H 0.058 0.942 26 H 0.058 0.942 27 H 0.059 0.941 28 H 0.059 0.941 29 H 0.057 0.943 30 H 0.058 0.942 31 H 0.076 0.924 32 H 0.080 0.920 33 H 0.061 0.939 34 H 0.075 0.925 35 H 0.146 0.854 36 H 0.108 0.892 37 H 0.109 0.891 38 H 0.131 0.869 39 H 0.271 0.729 40 H 0.076 0.924 41 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.696 11.597 -1.843 17.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.084 4.084 3 C -0.194 4.194 4 C -0.162 4.162 5 C -0.012 4.012 6 N -0.366 5.366 7 C 0.363 3.637 8 O -0.375 6.375 9 C -0.227 4.227 10 C -0.093 4.093 11 C -0.251 4.251 12 C -0.071 4.071 13 C -0.258 4.258 14 C 0.130 3.870 15 O -0.025 6.025 16 C -0.478 4.478 17 H 0.110 0.890 18 C -0.163 4.163 19 N -0.467 5.467 20 Si 0.765 3.235 21 H -0.198 1.198 22 H -0.201 1.201 23 H -0.191 1.191 24 C -0.017 4.017 25 H 0.077 0.923 26 H 0.077 0.923 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.094 0.906 32 H 0.098 0.902 33 H 0.079 0.921 34 H 0.094 0.906 35 H 0.163 0.837 36 H 0.126 0.874 37 H 0.127 0.873 38 H 0.149 0.851 39 H 0.081 0.919 40 H 0.093 0.907 41 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -11.755 11.089 -2.476 16.349 hybrid contribution 0.377 -0.614 0.766 1.052 sum -11.378 10.475 -1.710 15.560 Atomic orbital electron populations 1.21777 0.93363 1.02199 1.01985 1.21714 0.95881 0.95558 0.95242 1.21820 1.01406 0.94394 1.01827 1.22948 0.96296 0.99882 0.97064 1.22120 0.96328 1.00646 0.82128 1.48328 1.30888 1.46532 1.10812 1.17999 0.82618 0.77765 0.85308 1.90937 1.23907 1.50075 1.72605 1.18772 1.04430 1.04692 0.94843 1.22144 0.94268 0.97647 0.95262 1.20508 1.04753 1.04011 0.95865 1.20921 0.93903 0.94022 0.98210 1.21138 1.02510 1.05736 0.96442 1.19311 0.86920 0.90018 0.90773 1.84189 1.35081 1.46843 1.36382 1.21480 1.16577 1.18457 0.91273 0.88953 1.25380 0.97047 0.97419 0.96483 1.70119 1.30000 1.35701 1.10847 0.85728 0.78748 0.79722 0.79317 1.19771 1.20127 1.19058 1.22542 0.88817 0.94403 0.95903 0.92276 0.92286 0.92209 0.92197 0.92405 0.92317 0.90561 0.90187 0.92083 0.90613 0.83713 0.87387 0.87315 0.85146 0.91881 0.90659 0.90944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.07 8.49 37.16 0.32 -0.76 16 2 C -0.08 -0.82 0.93 -152.67 -0.14 -0.96 16 3 C -0.14 -1.20 8.44 37.16 0.31 -0.88 16 4 C -0.12 -1.31 6.04 -24.46 -0.15 -1.46 16 5 C 0.11 1.65 6.58 -2.40 -0.02 1.63 16 6 N -0.63 -11.05 3.33 -175.04 -0.58 -11.64 16 7 C 0.57 13.35 7.79 -12.47 -0.10 13.25 16 8 O -0.50 -14.37 15.51 -16.40 -0.25 -14.62 16 9 C -0.22 -5.09 5.89 -104.81 -0.62 -5.70 16 10 C -0.08 -1.36 8.59 -39.20 -0.34 -1.70 16 11 C -0.23 -3.95 10.03 -39.61 -0.40 -4.35 16 12 C -0.05 -0.95 10.03 -39.54 -0.40 -1.35 16 13 C -0.24 -5.31 9.12 -39.44 -0.36 -5.67 16 14 C 0.19 4.87 6.65 -38.59 -0.26 4.62 16 15 O -0.13 -3.85 7.87 -20.90 -0.16 -4.01 16 16 C -0.40 -11.64 9.43 30.90 0.29 -11.35 16 17 H 0.09 2.43 5.34 -52.49 -0.28 2.15 16 18 C 0.04 1.26 5.49 -17.52 -0.10 1.16 16 19 N -0.84 -25.63 13.67 55.48 0.76 -24.87 16 20 Si 0.94 20.88 29.55 -169.99 -5.02 15.85 16 21 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 22 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 23 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 24 C 0.11 1.38 4.05 -3.07 -0.01 1.37 16 25 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.06 0.49 8.13 -51.93 -0.42 0.07 16 28 H 0.06 0.60 7.42 -51.93 -0.39 0.21 16 29 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.08 0.81 8.04 -51.93 -0.42 0.39 16 32 H 0.08 0.69 8.04 -51.93 -0.42 0.27 16 33 H 0.06 0.87 7.69 -51.93 -0.40 0.47 16 34 H 0.08 1.26 8.09 -51.93 -0.42 0.84 16 35 H 0.15 2.11 2.78 -56.94 -0.16 1.95 16 36 H 0.11 1.48 8.06 -52.49 -0.42 1.05 16 37 H 0.11 1.63 8.06 -52.49 -0.42 1.20 16 38 H 0.13 2.85 5.74 -52.49 -0.30 2.55 16 39 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 40 H 0.08 0.96 6.35 -51.93 -0.33 0.63 16 41 H 0.07 0.90 6.50 -51.93 -0.34 0.57 16 LS Contribution 329.88 15.07 4.97 4.97 Total: -1.00 -35.35 329.88 -7.79 -43.14 By element: Atomic # 1 Polarization: 8.87 SS G_CDS: -5.54 Total: 3.33 kcal Atomic # 6 Polarization: -10.21 SS G_CDS: -1.95 Total: -12.16 kcal Atomic # 7 Polarization: -36.68 SS G_CDS: 0.18 Total: -36.51 kcal Atomic # 8 Polarization: -18.21 SS G_CDS: -0.42 Total: -18.63 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -35.35 -7.79 -43.14 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000173674701.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.132 kcal (2) G-P(sol) polarization free energy of solvation -35.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds