Wall clock time and date at job start Tue Mar 31 2020 07:06:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 110.78166 * 2 1 4 4 C 1.55159 * 110.71538 * 236.76511 * 2 1 3 5 5 C 1.55131 * 101.48638 * 205.96974 * 4 2 1 6 6 N 1.47434 * 104.72087 * 37.29280 * 5 4 2 7 7 C 1.34776 * 125.64606 * 155.82301 * 6 5 4 8 8 O 1.21589 * 120.00298 * 5.10369 * 7 6 5 9 9 C 1.47527 * 119.99748 * 185.11203 * 7 6 5 10 10 C 1.39670 * 120.19965 * 351.80755 * 9 7 6 11 11 C 1.37831 * 119.92206 * 179.97438 * 10 9 7 12 12 C 1.38573 * 120.32019 * 0.02562 * 11 10 9 13 13 C 1.38023 * 120.40696 * 359.97438 * 12 11 10 14 14 C 1.38838 * 120.06924 * 0.02562 * 13 12 11 15 15 O 1.35522 * 120.16106 * 180.27329 * 14 13 12 16 16 C 1.34814 * 116.99584 * 352.98556 * 15 14 13 17 17 H 1.07995 * 120.00615 * 354.06776 * 16 15 14 18 18 C 1.38703 * 119.99450 * 174.07071 * 16 15 14 19 19 N 1.31513 * 120.00403 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 119.99708 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47249 * 89.99896 * 20 18 16 22 22 H 1.48500 * 109.47027 * 210.00203 * 20 18 16 23 23 H 1.48506 * 109.47206 * 329.99908 * 20 18 16 24 24 C 1.47020 * 108.70114 * 335.55619 * 6 5 4 25 25 H 1.09005 * 109.46778 * 298.20990 * 1 2 3 26 26 H 1.08997 * 109.47280 * 58.21279 * 1 2 3 27 27 H 1.09000 * 109.46951 * 178.21651 * 1 2 3 28 28 H 1.09004 * 109.46990 * 181.78954 * 3 2 1 29 29 H 1.09000 * 109.47092 * 301.78890 * 3 2 1 30 30 H 1.08996 * 109.47193 * 61.78844 * 3 2 1 31 31 H 1.08997 * 111.00670 * 324.20611 * 4 2 1 32 32 H 1.08997 * 111.00865 * 88.02208 * 4 2 1 33 33 H 1.09004 * 110.49548 * 278.45470 * 5 4 2 34 34 H 1.08996 * 110.34644 * 156.05613 * 5 4 2 35 35 H 1.07997 * 120.03776 * 0.02562 * 10 9 7 36 36 H 1.07999 * 119.83645 * 179.97438 * 11 10 9 37 37 H 1.08000 * 119.79740 * 179.97438 * 12 11 10 38 38 H 1.07992 * 119.96958 * 179.97438 * 13 12 11 39 39 H 0.97002 * 120.00317 * 179.97438 * 19 18 16 40 40 H 1.08998 * 109.87887 * 120.70461 * 24 6 5 41 41 H 1.08998 * 109.87778 * 241.71197 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0729 1.4304 0.0000 4 6 2.0788 -0.7954 -1.2139 5 6 3.4665 -1.2456 -0.6864 6 7 3.2445 -1.5508 0.7389 7 6 3.9923 -2.3837 1.4895 8 8 4.9970 -2.8855 1.0234 9 6 3.5919 -2.6866 2.8767 10 6 2.5410 -1.9863 3.4734 11 6 2.1713 -2.2744 4.7696 12 6 2.8377 -3.2561 5.4854 13 6 3.8780 -3.9564 4.9089 14 6 4.2642 -3.6797 3.6043 15 8 5.2817 -4.3700 3.0345 16 6 5.9733 -5.2095 3.8311 17 1 5.7706 -5.2377 4.8914 18 6 6.9452 -6.0371 3.2886 19 7 7.1918 -6.0032 1.9972 20 14 7.9040 -7.1998 4.3923 21 1 7.1946 -8.5018 4.4748 22 1 9.2616 -7.4106 3.8287 23 1 8.0181 -6.6113 5.7510 24 6 2.0760 -0.7913 1.2072 25 1 -0.3633 0.4858 0.9057 26 1 -0.3634 0.5413 -0.8735 27 1 -0.3633 -1.0272 -0.0320 28 1 3.1621 1.4057 -0.0321 29 1 1.6956 1.9622 -0.8735 30 1 1.7476 1.9425 0.9055 31 1 1.4451 -1.6535 -1.4376 32 1 2.1842 -0.1520 -2.0873 33 1 4.1946 -0.4415 -0.7931 34 1 3.8030 -2.1362 -1.2171 35 1 2.0183 -1.2206 2.9196 36 1 1.3588 -1.7317 5.2298 37 1 2.5412 -3.4746 6.5007 38 1 4.3927 -4.7197 5.4733 39 1 7.8718 -6.5817 1.6179 40 1 1.3130 -1.4759 1.5774 41 1 2.3737 -0.1045 1.9995 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000173674701.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:18 Heat of formation + Delta-G solvation = -37.660288 kcal Electronic energy + Delta-G solvation = -23390.148361 eV Core-core repulsion = 20042.670806 eV Total energy + Delta-G solvation = -3347.477555 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.68079 -40.40624 -38.75684 -38.07554 -34.59846 -34.32752 -32.65387 -30.67215 -30.29487 -28.13202 -27.56183 -27.38620 -25.06368 -23.44693 -22.91188 -20.96948 -20.33303 -19.67958 -18.65208 -17.92350 -17.17934 -16.69516 -16.37687 -15.98746 -15.73149 -15.60460 -15.32124 -15.00250 -14.84037 -14.35462 -14.32295 -14.02878 -13.80296 -13.60136 -13.44612 -13.03562 -12.94586 -12.66804 -12.55809 -12.51796 -12.44795 -12.37901 -12.14451 -11.60501 -11.53107 -11.48801 -11.17402 -10.85514 -10.58999 -9.87456 -9.63801 -9.03277 -8.47317 -6.18320 0.10821 0.70615 1.30286 1.42435 1.50108 2.01278 2.06919 2.14445 2.84232 3.19647 3.37533 3.46212 3.51923 3.87835 3.94216 4.11714 4.22011 4.25301 4.28927 4.40638 4.49505 4.55665 4.58384 4.73970 4.79179 4.88631 4.92678 4.95340 5.04848 5.06926 5.08667 5.14048 5.17105 5.26025 5.39999 5.45171 5.51460 5.55338 5.62098 5.67928 5.93928 6.16973 6.55561 6.91901 7.36248 7.78294 8.73990 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.022273 B = 0.004653 C = 0.003968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.838963 B = 6016.101778 C = 7055.083929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.071 4.071 3 C -0.137 4.137 4 C -0.111 4.111 5 C 0.099 3.901 6 N -0.621 5.621 7 C 0.558 3.442 8 O -0.576 6.576 9 C -0.243 4.243 10 C -0.069 4.069 11 C -0.201 4.201 12 C -0.041 4.041 13 C -0.258 4.258 14 C 0.147 3.853 15 O -0.192 6.192 16 C -0.427 4.427 17 H 0.106 0.894 18 C -0.023 4.023 19 N -0.908 5.908 20 Si 1.025 2.975 21 H -0.259 1.259 22 H -0.272 1.272 23 H -0.248 1.248 24 C 0.091 3.909 25 H 0.074 0.926 26 H 0.076 0.924 27 H 0.055 0.945 28 H 0.040 0.960 29 H 0.078 0.922 30 H 0.072 0.928 31 H 0.077 0.923 32 H 0.108 0.892 33 H 0.065 0.935 34 H 0.044 0.956 35 H 0.187 0.813 36 H 0.167 0.833 37 H 0.155 0.845 38 H 0.123 0.877 39 H 0.271 0.729 40 H 0.086 0.914 41 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.887 14.372 0.367 22.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.071 4.071 3 C -0.194 4.194 4 C -0.149 4.149 5 C -0.024 4.024 6 N -0.356 5.356 7 C 0.350 3.650 8 O -0.456 6.456 9 C -0.247 4.247 10 C -0.086 4.086 11 C -0.219 4.219 12 C -0.059 4.059 13 C -0.277 4.277 14 C 0.092 3.908 15 O -0.095 6.095 16 C -0.503 4.503 17 H 0.123 0.877 18 C -0.222 4.222 19 N -0.544 5.544 20 Si 0.843 3.157 21 H -0.184 1.184 22 H -0.197 1.197 23 H -0.172 1.172 24 C -0.030 4.030 25 H 0.093 0.907 26 H 0.094 0.906 27 H 0.074 0.926 28 H 0.059 0.941 29 H 0.097 0.903 30 H 0.091 0.909 31 H 0.096 0.904 32 H 0.126 0.874 33 H 0.083 0.917 34 H 0.063 0.937 35 H 0.203 0.797 36 H 0.184 0.816 37 H 0.173 0.827 38 H 0.141 0.859 39 H 0.080 0.920 40 H 0.103 0.897 41 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -16.062 13.950 -0.242 21.275 hybrid contribution 1.294 -1.133 0.130 1.725 sum -14.768 12.817 -0.111 19.555 Atomic orbital electron populations 1.21773 0.90959 1.02525 1.03689 1.21710 0.97487 0.95431 0.92509 1.21837 1.00242 0.93698 1.03589 1.22953 0.92915 1.00584 0.98467 1.22373 0.99681 0.99540 0.80783 1.48337 1.30930 1.44790 1.11542 1.18354 0.82355 0.78092 0.86154 1.90897 1.27317 1.53272 1.74109 1.19240 1.05713 1.04846 0.94921 1.22713 0.92378 0.97326 0.96196 1.21256 1.04140 1.01873 0.94635 1.21477 0.91591 0.92656 1.00155 1.21295 1.04285 1.06832 0.95281 1.20121 0.87244 0.90702 0.92765 1.84187 1.37952 1.49421 1.37935 1.22036 1.17475 1.18727 0.92089 0.87673 1.26809 0.98010 0.99233 0.98164 1.70319 1.32149 1.38304 1.13661 0.84533 0.76760 0.77067 0.77383 1.18369 1.19686 1.17155 1.22937 0.87151 0.94678 0.98198 0.90697 0.90552 0.92614 0.94059 0.90348 0.90935 0.90430 0.87350 0.91687 0.93706 0.79701 0.81579 0.82703 0.85884 0.91973 0.89651 0.89537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.41 8.49 71.98 0.61 -0.80 16 2 C -0.07 -1.13 0.93 -50.99 -0.05 -1.17 16 3 C -0.14 -1.83 8.44 71.98 0.61 -1.22 16 4 C -0.11 -2.13 6.04 32.06 0.19 -1.94 16 5 C 0.10 3.04 6.58 86.93 0.57 3.61 16 6 N -0.62 -22.26 3.33 -825.96 -2.75 -25.00 16 7 C 0.56 27.77 7.79 86.69 0.68 28.45 16 8 O -0.58 -36.51 15.51 16.74 0.26 -36.25 16 9 C -0.24 -11.36 5.89 -19.99 -0.12 -11.48 16 10 C -0.07 -2.26 8.59 22.52 0.19 -2.07 16 11 C -0.20 -5.66 10.03 22.25 0.22 -5.44 16 12 C -0.04 -1.32 10.03 22.30 0.22 -1.10 16 13 C -0.26 -11.51 9.12 22.36 0.20 -11.31 16 14 C 0.15 7.97 6.65 22.91 0.15 8.12 16 15 O -0.19 -12.77 7.87 0.66 0.01 -12.77 16 16 C -0.43 -26.74 9.43 67.93 0.64 -26.10 16 17 H 0.11 5.91 5.34 -2.91 -0.02 5.89 16 18 C -0.02 -1.42 5.49 84.85 0.47 -0.96 16 19 N -0.91 -61.00 13.67 21.62 0.30 -60.71 16 20 Si 1.02 45.31 29.55 68.60 2.03 47.34 16 21 H -0.26 -10.73 7.11 99.48 0.71 -10.02 16 22 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 23 H -0.25 -10.04 7.11 99.48 0.71 -9.33 16 24 C 0.09 2.11 4.05 86.73 0.35 2.46 16 25 H 0.07 0.61 8.14 -2.38 -0.02 0.59 16 26 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 27 H 0.05 0.67 8.13 -2.39 -0.02 0.65 16 28 H 0.04 0.72 7.42 -2.39 -0.02 0.70 16 29 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.08 1.50 8.04 -2.39 -0.02 1.48 16 32 H 0.11 1.52 8.04 -2.39 -0.02 1.50 16 33 H 0.06 1.93 7.69 -2.39 -0.02 1.91 16 34 H 0.04 1.64 8.09 -2.39 -0.02 1.62 16 35 H 0.19 4.49 2.78 -7.10 -0.02 4.47 16 36 H 0.17 2.99 8.06 -2.91 -0.02 2.97 16 37 H 0.16 3.68 8.06 -2.91 -0.02 3.65 16 38 H 0.12 5.55 5.74 -2.91 -0.02 5.53 16 39 H 0.27 16.62 8.31 -92.71 -0.77 15.85 16 40 H 0.09 1.84 6.35 -2.39 -0.02 1.83 16 41 H 0.09 1.80 6.50 -2.39 -0.02 1.79 16 Total: -1.00 -91.88 329.88 5.82 -86.06 By element: Atomic # 1 Polarization: 21.26 SS G_CDS: 1.03 Total: 22.29 kcal Atomic # 6 Polarization: -25.90 SS G_CDS: 4.95 Total: -20.96 kcal Atomic # 7 Polarization: -83.26 SS G_CDS: -2.45 Total: -85.71 kcal Atomic # 8 Polarization: -49.29 SS G_CDS: 0.26 Total: -49.02 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 2.03 Total: 47.34 kcal Total: -91.88 5.82 -86.06 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000173674701.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.403 kcal (2) G-P(sol) polarization free energy of solvation -91.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds