Wall clock time and date at job start Tue Mar 31 2020 06:55:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 110.05570 * 2 1 4 4 C 1.54268 * 110.03047 * 238.58625 * 2 1 3 5 5 C 1.54887 * 104.19343 * 217.10477 * 4 2 1 6 6 C 1.54887 * 102.74896 * 37.94384 * 5 4 2 7 7 C 1.53869 * 110.03273 * 121.42059 * 2 1 3 8 8 H 1.09005 * 110.07123 * 238.58860 * 7 2 1 9 9 N 1.46503 * 110.03448 * 359.97438 * 7 2 1 10 10 S 1.65600 * 120.00062 * 213.62464 * 9 7 2 11 11 O 1.42098 * 104.27576 * 308.92781 * 10 9 7 12 12 O 1.42102 * 104.27841 * 181.06908 * 10 9 7 13 13 C 1.81404 * 104.45074 * 64.99734 * 10 9 7 14 14 C 1.53000 * 109.46946 * 180.02562 * 13 10 9 15 15 C 1.53001 * 109.46886 * 180.02562 * 14 13 10 16 16 C 1.50697 * 109.47291 * 179.97438 * 15 14 13 17 17 H 1.08006 * 119.99920 * 359.97438 * 16 15 14 18 18 C 1.37876 * 120.00428 * 179.97438 * 16 15 14 19 19 N 1.31520 * 120.00162 * 179.97438 * 18 16 15 20 20 Si 1.86798 * 119.99868 * 359.97438 * 18 16 15 21 21 H 1.48504 * 109.47023 * 90.00014 * 20 18 16 22 22 H 1.48496 * 109.47251 * 210.00457 * 20 18 16 23 23 H 1.48498 * 109.47139 * 330.00202 * 20 18 16 24 24 H 1.09000 * 109.46850 * 298.58341 * 1 2 3 25 25 H 1.08994 * 109.47166 * 58.58056 * 1 2 3 26 26 H 1.09001 * 109.47070 * 178.58233 * 1 2 3 27 27 H 1.09000 * 109.47208 * 181.42049 * 3 2 1 28 28 H 1.09004 * 109.46993 * 301.42251 * 3 2 1 29 29 H 1.09004 * 109.47019 * 61.41556 * 3 2 1 30 30 H 1.08999 * 110.48776 * 98.42286 * 4 2 1 31 31 H 1.09003 * 110.48632 * 335.78039 * 4 2 1 32 32 H 1.08997 * 110.75666 * 279.62496 * 5 4 2 33 33 H 1.08999 * 110.75386 * 156.25903 * 5 4 2 34 34 H 1.09006 * 110.48465 * 203.37858 * 6 5 4 35 35 H 1.09001 * 110.48967 * 80.73685 * 6 5 4 36 36 H 0.96993 * 119.99757 * 33.61719 * 9 7 2 37 37 H 1.09002 * 109.47124 * 60.00022 * 13 10 9 38 38 H 1.09001 * 109.46975 * 300.00144 * 13 10 9 39 39 H 1.09001 * 109.47194 * 299.99756 * 14 13 10 40 40 H 1.08992 * 109.47399 * 59.99928 * 14 13 10 41 41 H 1.09001 * 109.47109 * 299.99380 * 15 14 13 42 42 H 1.09002 * 109.47508 * 59.99571 * 15 14 13 43 43 H 0.96996 * 119.99309 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0547 1.4372 0.0000 4 6 2.0585 -0.7554 -1.2369 5 6 3.3137 -1.5007 -0.7192 6 6 2.8875 -1.9407 0.7034 7 6 2.0571 -0.7536 1.2336 8 1 2.6866 -0.0959 1.8331 9 7 0.9360 -1.2447 2.0387 10 16 1.0713 -1.3211 3.6874 11 8 2.2869 -2.0234 3.9070 12 8 -0.1726 -1.8575 4.1167 13 6 1.2325 0.4089 4.2090 14 6 1.3672 0.4719 5.7317 15 6 1.5025 1.9310 6.1717 16 6 1.6346 1.9933 7.6716 17 1 1.6227 1.0832 8.2530 18 6 1.7705 3.2121 8.3017 19 7 1.8852 3.2664 9.6108 20 14 1.7918 4.7862 7.2962 21 1 0.4055 5.2975 7.1478 22 1 2.6236 5.8039 7.9873 23 1 2.3633 4.5085 5.9540 24 1 -0.3633 0.4917 0.9024 25 1 -0.3633 0.5357 -0.8769 26 1 -0.3633 -1.0274 -0.0254 27 1 3.1444 1.4262 -0.0255 28 1 1.6760 1.9622 -0.8770 29 1 1.7174 1.9471 0.9024 30 1 2.3296 -0.0536 -2.0255 31 1 1.3142 -1.4660 -1.5967 32 1 4.1710 -0.8290 -0.6753 33 1 3.5325 -2.3678 -1.3424 34 1 3.7638 -2.1038 1.3308 35 1 2.2771 -2.8426 0.6570 36 1 0.1144 -1.5250 1.6060 37 1 0.3485 0.9658 3.8986 38 1 2.1180 0.8464 3.7478 39 1 0.4820 0.0343 6.1932 40 1 2.2514 -0.0849 6.0417 41 1 2.3876 2.3691 5.7103 42 1 0.6181 2.4876 5.8618 43 1 1.9813 4.1238 10.0540 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000175682706.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:21 Heat of formation + Delta-G solvation = -100.704112 kcal Electronic energy + Delta-G solvation = -22077.458299 eV Core-core repulsion = 18862.690910 eV Total energy + Delta-G solvation = -3214.767389 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.150 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.83735 -36.89682 -35.76972 -34.81666 -33.78917 -32.50133 -32.21667 -28.40145 -27.94174 -27.16713 -24.59308 -23.61268 -21.06358 -20.53616 -19.26893 -19.23845 -17.55053 -16.89535 -16.53422 -15.90675 -15.55133 -15.33547 -14.84520 -14.25988 -14.20443 -13.78827 -13.42346 -13.24462 -12.94365 -12.89654 -12.48298 -12.35029 -12.14975 -11.93608 -11.86806 -11.84128 -11.65209 -11.57505 -11.27222 -11.17546 -11.00805 -10.96334 -10.84522 -10.82080 -10.71298 -10.09889 -9.89759 -9.78949 -9.35369 -9.24374 -8.59313 -6.08960 -4.08210 0.42515 2.82350 3.25827 3.33373 3.35251 3.88886 4.10991 4.27751 4.34305 4.39659 4.48451 4.83374 4.99425 5.00407 5.02835 5.05686 5.07298 5.13689 5.24854 5.32175 5.38032 5.45225 5.49974 5.59113 5.65774 5.69667 5.74735 5.81322 5.87093 5.97034 6.04620 6.10678 6.13717 6.19786 6.26615 6.66497 6.90205 7.11946 7.25993 7.70556 8.47237 8.95573 9.52170 11.04394 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.020403 B = 0.004227 C = 0.003814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1372.003786 B = 6622.453210 C = 7338.658487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.075 4.075 3 C -0.144 4.144 4 C -0.115 4.115 5 C -0.125 4.125 6 C -0.138 4.138 7 C 0.156 3.844 8 H 0.088 0.912 9 N -1.118 6.118 10 S 2.599 3.401 11 O -0.958 6.958 12 O -0.963 6.963 13 C -0.617 4.617 14 C -0.097 4.097 15 C -0.004 4.004 16 C -0.527 4.527 17 H 0.075 0.925 18 C 0.068 3.932 19 N -0.900 5.900 20 Si 0.880 3.120 21 H -0.276 1.276 22 H -0.287 1.287 23 H -0.266 1.266 24 H 0.062 0.938 25 H 0.057 0.943 26 H 0.057 0.943 27 H 0.059 0.941 28 H 0.058 0.942 29 H 0.060 0.940 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.069 0.931 33 H 0.067 0.933 34 H 0.077 0.923 35 H 0.074 0.926 36 H 0.415 0.585 37 H 0.128 0.872 38 H 0.125 0.875 39 H 0.071 0.929 40 H 0.072 0.928 41 H 0.020 0.980 42 H 0.015 0.985 43 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.256 -6.555 -24.978 25.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.077 4.077 3 C -0.201 4.201 4 C -0.152 4.152 5 C -0.163 4.163 6 C -0.177 4.177 7 C 0.048 3.952 8 H 0.106 0.894 9 N -0.878 5.878 10 S 2.694 3.306 11 O -0.948 6.948 12 O -0.954 6.954 13 C -0.748 4.748 14 C -0.137 4.137 15 C -0.043 4.043 16 C -0.565 4.565 17 H 0.093 0.907 18 C -0.134 4.134 19 N -0.539 5.539 20 Si 0.707 3.293 21 H -0.202 1.202 22 H -0.213 1.213 23 H -0.191 1.191 24 H 0.081 0.919 25 H 0.076 0.924 26 H 0.076 0.924 27 H 0.078 0.922 28 H 0.077 0.923 29 H 0.079 0.921 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.088 0.912 33 H 0.086 0.914 34 H 0.096 0.904 35 H 0.093 0.907 36 H 0.252 0.748 37 H 0.147 0.853 38 H 0.144 0.856 39 H 0.090 0.910 40 H 0.090 0.910 41 H 0.038 0.962 42 H 0.034 0.966 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -0.090 -7.196 -24.219 25.266 hybrid contribution -0.321 1.560 -0.725 1.750 sum -0.411 -5.636 -24.944 25.576 Atomic orbital electron populations 1.21884 0.94111 1.01660 1.02268 1.21432 0.96113 0.95664 0.94501 1.21957 1.01239 0.94587 1.02343 1.22487 0.97433 0.98797 0.96513 1.22480 0.97698 1.00013 0.96134 1.22867 1.00343 0.98215 0.96279 1.21515 0.86415 0.94910 0.92379 0.89363 1.56014 1.24290 1.81681 1.25782 1.05325 0.74402 0.78107 0.72783 1.93582 1.47431 1.69728 1.84011 1.93583 1.44304 1.77301 1.80176 1.30617 1.11128 1.23895 1.09154 1.21304 1.02657 1.02884 0.86810 1.19526 0.96626 0.90535 0.97584 1.21139 1.50600 0.94846 0.89922 0.90732 1.25024 0.94478 0.99095 0.94797 1.69914 1.50107 1.25713 1.08153 0.86776 0.78369 0.83335 0.80778 1.20221 1.21253 1.19076 0.91859 0.92362 0.92372 0.92157 0.92252 0.92128 0.91399 0.91398 0.91244 0.91393 0.90391 0.90692 0.74761 0.85324 0.85649 0.91027 0.90977 0.96208 0.96637 0.92623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.00 7.11 37.16 0.26 -0.74 16 2 C -0.08 -0.57 0.94 -153.39 -0.14 -0.71 16 3 C -0.14 -1.05 8.15 37.16 0.30 -0.75 16 4 C -0.11 -0.76 5.90 -25.07 -0.15 -0.91 16 5 C -0.13 -0.89 6.91 -24.74 -0.17 -1.06 16 6 C -0.14 -1.27 6.53 -25.08 -0.16 -1.43 16 7 C 0.16 1.44 2.97 -66.82 -0.20 1.25 16 8 H 0.09 0.80 6.74 -51.93 -0.35 0.45 16 9 N -1.12 -11.47 4.60 -3.94 -0.02 -11.49 16 10 S 2.60 36.85 5.39 -107.50 -0.58 36.27 16 11 O -0.96 -16.33 17.82 -57.54 -1.03 -17.35 16 12 O -0.96 -16.62 18.08 -57.54 -1.04 -17.66 16 13 C -0.62 -8.84 5.97 37.16 0.22 -8.62 16 14 C -0.10 -1.90 5.16 -26.73 -0.14 -2.03 16 15 C 0.00 -0.10 4.04 -27.88 -0.11 -0.21 16 16 C -0.53 -15.03 9.66 -34.44 -0.33 -15.36 16 17 H 0.07 2.28 7.99 -52.48 -0.42 1.86 16 18 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 19 N -0.90 -27.73 13.96 55.43 0.77 -26.96 16 20 Si 0.88 21.38 27.47 -169.99 -4.67 16.71 16 21 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 22 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 23 H -0.27 -6.12 6.54 56.52 0.37 -5.75 16 24 H 0.06 0.47 7.79 -51.93 -0.40 0.06 16 25 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.06 0.38 6.85 -51.93 -0.36 0.02 16 27 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 28 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.07 0.40 7.84 -51.93 -0.41 0.00 16 31 H 0.07 0.43 7.84 -51.93 -0.41 0.02 16 32 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 33 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 35 H 0.07 0.70 8.05 -51.93 -0.42 0.28 16 36 H 0.42 3.59 6.31 -34.47 -0.22 3.38 16 37 H 0.13 1.59 8.14 -51.92 -0.42 1.17 16 38 H 0.13 1.54 7.46 -51.92 -0.39 1.15 16 39 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 40 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 41 H 0.02 0.45 7.20 -51.93 -0.37 0.08 16 42 H 0.02 0.35 7.57 -51.93 -0.39 -0.04 16 43 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 348.24 15.07 5.25 5.25 Total: -1.00 -34.80 348.24 -9.56 -44.36 By element: Atomic # 1 Polarization: 7.08 SS G_CDS: -7.53 Total: -0.44 kcal Atomic # 6 Polarization: -27.97 SS G_CDS: -0.72 Total: -28.69 kcal Atomic # 7 Polarization: -39.21 SS G_CDS: 0.76 Total: -38.45 kcal Atomic # 8 Polarization: -32.94 SS G_CDS: -2.07 Total: -35.01 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -4.67 Total: 16.71 kcal Atomic # 16 Polarization: 36.85 SS G_CDS: -0.58 Total: 36.27 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -34.80 -9.56 -44.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000175682706.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.347 kcal (2) G-P(sol) polarization free energy of solvation -34.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds