Wall clock time and date at job start Tue Mar 31 2020 06:55:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 110.05570 * 2 1 4 4 C 1.54268 * 110.03047 * 238.58625 * 2 1 3 5 5 C 1.54887 * 104.19343 * 217.10477 * 4 2 1 6 6 C 1.54887 * 102.74896 * 37.94384 * 5 4 2 7 7 C 1.53869 * 110.03273 * 121.42059 * 2 1 3 8 8 H 1.09005 * 110.07123 * 238.58860 * 7 2 1 9 9 N 1.46503 * 110.03448 * 359.97438 * 7 2 1 10 10 S 1.65600 * 120.00062 * 213.62464 * 9 7 2 11 11 O 1.42098 * 104.27576 * 308.92781 * 10 9 7 12 12 O 1.42102 * 104.27841 * 181.06908 * 10 9 7 13 13 C 1.81404 * 104.45074 * 64.99734 * 10 9 7 14 14 C 1.53000 * 109.46946 * 180.02562 * 13 10 9 15 15 C 1.53001 * 109.46886 * 180.02562 * 14 13 10 16 16 C 1.50697 * 109.47291 * 179.97438 * 15 14 13 17 17 H 1.08006 * 119.99920 * 359.97438 * 16 15 14 18 18 C 1.37876 * 120.00428 * 179.97438 * 16 15 14 19 19 N 1.31520 * 120.00162 * 179.97438 * 18 16 15 20 20 Si 1.86798 * 119.99868 * 359.97438 * 18 16 15 21 21 H 1.48504 * 109.47023 * 90.00014 * 20 18 16 22 22 H 1.48496 * 109.47251 * 210.00457 * 20 18 16 23 23 H 1.48498 * 109.47139 * 330.00202 * 20 18 16 24 24 H 1.09000 * 109.46850 * 298.58341 * 1 2 3 25 25 H 1.08994 * 109.47166 * 58.58056 * 1 2 3 26 26 H 1.09001 * 109.47070 * 178.58233 * 1 2 3 27 27 H 1.09000 * 109.47208 * 181.42049 * 3 2 1 28 28 H 1.09004 * 109.46993 * 301.42251 * 3 2 1 29 29 H 1.09004 * 109.47019 * 61.41556 * 3 2 1 30 30 H 1.08999 * 110.48776 * 98.42286 * 4 2 1 31 31 H 1.09003 * 110.48632 * 335.78039 * 4 2 1 32 32 H 1.08997 * 110.75666 * 279.62496 * 5 4 2 33 33 H 1.08999 * 110.75386 * 156.25903 * 5 4 2 34 34 H 1.09006 * 110.48465 * 203.37858 * 6 5 4 35 35 H 1.09001 * 110.48967 * 80.73685 * 6 5 4 36 36 H 0.96993 * 119.99757 * 33.61719 * 9 7 2 37 37 H 1.09002 * 109.47124 * 60.00022 * 13 10 9 38 38 H 1.09001 * 109.46975 * 300.00144 * 13 10 9 39 39 H 1.09001 * 109.47194 * 299.99756 * 14 13 10 40 40 H 1.08992 * 109.47399 * 59.99928 * 14 13 10 41 41 H 1.09001 * 109.47109 * 299.99380 * 15 14 13 42 42 H 1.09002 * 109.47508 * 59.99571 * 15 14 13 43 43 H 0.96996 * 119.99309 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0547 1.4372 0.0000 4 6 2.0585 -0.7554 -1.2369 5 6 3.3137 -1.5007 -0.7192 6 6 2.8875 -1.9407 0.7034 7 6 2.0571 -0.7536 1.2336 8 1 2.6866 -0.0959 1.8331 9 7 0.9360 -1.2447 2.0387 10 16 1.0713 -1.3211 3.6874 11 8 2.2869 -2.0234 3.9070 12 8 -0.1726 -1.8575 4.1167 13 6 1.2325 0.4089 4.2090 14 6 1.3672 0.4719 5.7317 15 6 1.5025 1.9310 6.1717 16 6 1.6346 1.9933 7.6716 17 1 1.6227 1.0832 8.2530 18 6 1.7705 3.2121 8.3017 19 7 1.8852 3.2664 9.6108 20 14 1.7918 4.7862 7.2962 21 1 0.4055 5.2975 7.1478 22 1 2.6236 5.8039 7.9873 23 1 2.3633 4.5085 5.9540 24 1 -0.3633 0.4917 0.9024 25 1 -0.3633 0.5357 -0.8769 26 1 -0.3633 -1.0274 -0.0254 27 1 3.1444 1.4262 -0.0255 28 1 1.6760 1.9622 -0.8770 29 1 1.7174 1.9471 0.9024 30 1 2.3296 -0.0536 -2.0255 31 1 1.3142 -1.4660 -1.5967 32 1 4.1710 -0.8290 -0.6753 33 1 3.5325 -2.3678 -1.3424 34 1 3.7638 -2.1038 1.3308 35 1 2.2771 -2.8426 0.6570 36 1 0.1144 -1.5250 1.6060 37 1 0.3485 0.9658 3.8986 38 1 2.1180 0.8464 3.7478 39 1 0.4820 0.0343 6.1932 40 1 2.2514 -0.0849 6.0417 41 1 2.3876 2.3691 5.7103 42 1 0.6181 2.4876 5.8618 43 1 1.9813 4.1238 10.0540 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000175682706.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:21 Heat of formation + Delta-G solvation = -125.139903 kcal Electronic energy + Delta-G solvation = -22078.517914 eV Core-core repulsion = 18862.690910 eV Total energy + Delta-G solvation = -3215.827004 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.150 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.47040 -38.15932 -37.03808 -36.51861 -34.58429 -34.25885 -33.07539 -30.17376 -28.52811 -27.78652 -25.40193 -25.19034 -22.27174 -21.69933 -20.36214 -19.91015 -18.97488 -18.60933 -17.42920 -17.19982 -16.59308 -16.20265 -16.07361 -15.79905 -15.31750 -14.87196 -14.34971 -14.11175 -14.02880 -13.92940 -13.69974 -13.59529 -13.26056 -13.20662 -13.12747 -13.01368 -12.70709 -12.56945 -12.50327 -12.40307 -11.93934 -11.85266 -11.77738 -11.66017 -11.52180 -11.41356 -11.35071 -11.30438 -11.19909 -10.78066 -10.28599 -8.30444 -6.36590 -0.73360 1.36383 1.39093 1.50677 1.80101 2.35994 2.75312 3.04725 3.23651 3.48672 3.68153 3.69812 3.88327 3.89721 4.22590 4.32083 4.40295 4.45395 4.46883 4.51303 4.59570 4.65849 4.79988 4.83504 4.90819 4.94657 4.97970 5.07005 5.12188 5.15915 5.27666 5.29035 5.32593 5.44204 5.44843 5.46507 5.52006 5.60026 5.61870 6.13546 6.24596 6.71649 7.28148 8.86665 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.020403 B = 0.004227 C = 0.003814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1372.003786 B = 6622.453210 C = 7338.658487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.071 4.071 3 C -0.146 4.146 4 C -0.111 4.111 5 C -0.121 4.121 6 C -0.144 4.144 7 C 0.144 3.856 8 H 0.092 0.908 9 N -1.101 6.101 10 S 2.617 3.383 11 O -0.990 6.990 12 O -0.997 6.997 13 C -0.610 4.610 14 C -0.103 4.103 15 C -0.004 4.004 16 C -0.545 4.545 17 H 0.029 0.971 18 C 0.001 3.999 19 N -0.953 5.953 20 Si 0.955 3.045 21 H -0.264 1.264 22 H -0.285 1.285 23 H -0.238 1.238 24 H 0.060 0.940 25 H 0.068 0.932 26 H 0.061 0.939 27 H 0.062 0.938 28 H 0.068 0.932 29 H 0.056 0.944 30 H 0.079 0.921 31 H 0.071 0.929 32 H 0.074 0.926 33 H 0.075 0.925 34 H 0.063 0.937 35 H 0.069 0.931 36 H 0.425 0.575 37 H 0.156 0.844 38 H 0.152 0.848 39 H 0.061 0.939 40 H 0.062 0.938 41 H 0.033 0.967 42 H 0.031 0.969 43 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.428 -4.968 -28.511 28.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.073 4.073 3 C -0.204 4.204 4 C -0.149 4.149 5 C -0.159 4.159 6 C -0.183 4.183 7 C 0.037 3.963 8 H 0.110 0.890 9 N -0.864 5.864 10 S 2.713 3.287 11 O -0.980 6.980 12 O -0.987 6.987 13 C -0.741 4.741 14 C -0.143 4.143 15 C -0.043 4.043 16 C -0.583 4.583 17 H 0.047 0.953 18 C -0.196 4.196 19 N -0.593 5.593 20 Si 0.778 3.222 21 H -0.189 1.189 22 H -0.211 1.211 23 H -0.161 1.161 24 H 0.079 0.921 25 H 0.087 0.913 26 H 0.080 0.920 27 H 0.081 0.919 28 H 0.087 0.913 29 H 0.075 0.925 30 H 0.098 0.902 31 H 0.090 0.910 32 H 0.093 0.907 33 H 0.093 0.907 34 H 0.082 0.918 35 H 0.088 0.912 36 H 0.265 0.735 37 H 0.174 0.826 38 H 0.170 0.830 39 H 0.080 0.920 40 H 0.081 0.919 41 H 0.051 0.949 42 H 0.049 0.951 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -0.272 -5.640 -27.769 28.337 hybrid contribution -0.252 0.971 0.416 1.086 sum -0.524 -4.670 -27.353 27.754 Atomic orbital electron populations 1.21936 0.93727 1.02080 1.02676 1.21410 0.96426 0.95711 0.93709 1.21990 1.01478 0.94239 1.02647 1.22485 0.97089 0.98936 0.96356 1.22470 0.98206 1.00492 0.94722 1.22893 0.99750 0.98148 0.97555 1.21796 0.86081 0.95281 0.93105 0.89031 1.55622 1.25226 1.81557 1.24018 1.04499 0.72956 0.77711 0.73509 1.93544 1.48646 1.70753 1.85020 1.93535 1.45559 1.78158 1.81450 1.30515 1.13857 1.24549 1.05219 1.21171 1.01955 1.00444 0.90683 1.19498 0.97652 0.93230 0.93889 1.21562 1.50395 0.93457 0.92904 0.95299 1.26120 0.93851 1.03569 0.96020 1.70089 1.51713 1.26975 1.10528 0.85587 0.79101 0.77594 0.79953 1.18938 1.21095 1.16070 0.92119 0.91332 0.92013 0.91909 0.91262 0.92514 0.90212 0.91011 0.90735 0.90673 0.91847 0.91224 0.73546 0.82597 0.82977 0.92033 0.91946 0.94883 0.95078 0.92416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.63 7.11 71.98 0.51 -1.11 16 2 C -0.07 -0.85 0.94 -51.46 -0.05 -0.90 16 3 C -0.15 -1.64 8.15 71.98 0.59 -1.06 16 4 C -0.11 -1.13 5.90 31.67 0.19 -0.95 16 5 C -0.12 -1.44 6.91 31.88 0.22 -1.22 16 6 C -0.14 -2.45 6.53 31.67 0.21 -2.24 16 7 C 0.14 2.37 2.97 45.71 0.14 2.50 16 8 H 0.09 1.44 6.74 -2.38 -0.02 1.43 16 9 N -1.10 -20.57 4.60 -166.38 -0.77 -21.33 16 10 S 2.62 71.74 5.39 -56.49 -0.30 71.44 16 11 O -0.99 -33.59 17.82 -127.65 -2.27 -35.87 16 12 O -1.00 -34.00 18.08 -127.65 -2.31 -36.31 16 13 C -0.61 -16.05 5.97 71.98 0.43 -15.63 16 14 C -0.10 -3.97 5.16 30.59 0.16 -3.82 16 15 C 0.00 -0.19 4.04 29.85 0.12 -0.07 16 16 C -0.55 -31.74 9.66 25.60 0.25 -31.50 16 17 H 0.03 1.87 7.99 -2.91 -0.02 1.84 16 18 C 0.00 0.06 5.47 84.65 0.46 0.53 16 19 N -0.95 -60.31 13.96 21.45 0.30 -60.01 16 20 Si 0.96 43.08 27.47 68.60 1.88 44.96 16 21 H -0.26 -11.37 7.11 99.48 0.71 -10.67 16 22 H -0.29 -12.70 7.11 99.48 0.71 -12.00 16 23 H -0.24 -9.56 6.54 99.48 0.65 -8.91 16 24 H 0.06 0.71 7.79 -2.39 -0.02 0.69 16 25 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 26 H 0.06 0.63 6.85 -2.39 -0.02 0.61 16 27 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 28 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 29 H 0.06 0.69 8.14 -2.38 -0.02 0.67 16 30 H 0.08 0.66 7.84 -2.39 -0.02 0.64 16 31 H 0.07 0.69 7.84 -2.39 -0.02 0.68 16 32 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.06 1.25 8.14 -2.38 -0.02 1.23 16 35 H 0.07 1.24 8.05 -2.39 -0.02 1.22 16 36 H 0.42 6.51 6.31 -96.75 -0.61 5.90 16 37 H 0.16 3.28 8.14 -2.39 -0.02 3.26 16 38 H 0.15 3.20 7.46 -2.39 -0.02 3.19 16 39 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 40 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 41 H 0.03 1.41 7.20 -2.39 -0.02 1.39 16 42 H 0.03 1.31 7.57 -2.39 -0.02 1.29 16 43 H 0.27 15.68 8.31 -92.71 -0.77 14.90 16 Total: -1.00 -76.92 348.24 0.05 -76.86 By element: Atomic # 1 Polarization: 15.40 SS G_CDS: 0.30 Total: 15.70 kcal Atomic # 6 Polarization: -58.67 SS G_CDS: 3.22 Total: -55.45 kcal Atomic # 7 Polarization: -80.87 SS G_CDS: -0.47 Total: -81.34 kcal Atomic # 8 Polarization: -67.59 SS G_CDS: -4.58 Total: -72.17 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 1.88 Total: 44.96 kcal Atomic # 16 Polarization: 71.74 SS G_CDS: -0.30 Total: 71.44 kcal Total: -76.92 0.05 -76.86 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000175682706.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.277 kcal (2) G-P(sol) polarization free energy of solvation -76.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds