Wall clock time and date at job start Tue Mar 31 2020 07:03:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.86780 * 2 1 4 4 N 1.46493 * 109.47481 * 59.55140 * 3 2 1 5 5 C 1.34778 * 120.00092 * 179.97438 * 4 3 2 6 6 O 1.21546 * 120.00241 * 0.02562 * 5 4 3 7 7 C 1.47890 * 120.00083 * 180.02562 * 5 4 3 8 8 C 1.39919 * 120.02231 * 0.02562 * 7 5 4 9 9 C 1.38334 * 120.35568 * 180.02562 * 8 7 5 10 10 C 1.37747 * 120.41414 * 0.28129 * 9 8 7 11 11 C 1.40754 * 120.03815 * 359.45056 * 10 9 8 12 12 C 1.41434 * 120.17741 * 180.27357 * 11 10 9 13 13 H 1.08000 * 120.00411 * 335.20745 * 12 11 10 14 14 C 1.39937 * 119.99916 * 155.20872 * 12 11 10 15 15 N 1.30836 * 119.99904 * 342.59461 * 14 12 11 16 16 Si 1.86796 * 120.00350 * 162.60141 * 14 12 11 17 17 H 1.48503 * 109.46665 * 359.97438 * 16 14 12 18 18 H 1.48502 * 109.47568 * 119.99522 * 16 14 12 19 19 H 1.48505 * 109.47100 * 239.99948 * 16 14 12 20 20 C 1.38987 * 120.02616 * 180.02562 * 7 5 4 21 21 C 1.54096 * 110.00440 * 238.91147 * 2 1 3 22 22 C 1.54812 * 104.18660 * 242.53271 * 21 2 1 23 23 C 1.54992 * 102.09212 * 20.88020 * 22 21 2 24 24 O 1.43748 * 109.87938 * 121.00408 * 2 1 3 25 25 H 1.08996 * 109.47238 * 60.70476 * 1 2 3 26 26 H 1.08997 * 109.46929 * 180.70551 * 1 2 3 27 27 H 1.09001 * 109.47053 * 300.69718 * 1 2 3 28 28 H 1.09004 * 109.47033 * 299.55291 * 3 2 1 29 29 H 1.09004 * 109.47326 * 179.55307 * 3 2 1 30 30 H 0.96997 * 120.00203 * 0.02562 * 4 3 2 31 31 H 1.08000 * 119.82575 * 0.04552 * 8 7 5 32 32 H 1.08000 * 119.78870 * 180.02562 * 9 8 7 33 33 H 1.07999 * 119.98587 * 179.72071 * 10 9 8 34 34 H 0.96996 * 120.00123 * 180.02562 * 15 14 12 35 35 H 1.07998 * 120.20456 * 359.95546 * 20 7 5 36 36 H 1.09004 * 110.48982 * 1.20905 * 21 2 1 37 37 H 1.08997 * 110.48846 * 123.85838 * 21 2 1 38 38 H 1.09000 * 110.90759 * 262.68115 * 22 21 2 39 39 H 1.09008 * 110.93405 * 139.09205 * 22 21 2 40 40 H 1.08997 * 110.61700 * 204.46915 * 23 22 21 41 41 H 1.09006 * 110.61713 * 81.47673 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0500 1.4389 0.0000 4 7 1.5577 2.1361 1.1906 5 6 1.8911 3.4246 1.4032 6 8 2.5999 4.0083 0.6067 7 6 1.3946 4.1283 2.6055 8 6 0.5792 3.4567 3.5229 9 6 0.1105 4.1083 4.6495 10 6 0.4361 5.4271 4.8784 11 6 1.2599 6.1174 3.9696 12 6 1.6008 7.4697 4.2048 13 1 0.9580 8.0913 4.8105 14 6 2.7710 8.0025 3.6525 15 7 3.7115 7.2039 3.2174 16 14 2.9903 9.8540 3.5365 17 1 1.7911 10.5302 4.0932 18 1 4.1915 10.2596 4.3098 19 1 3.1624 10.2439 2.1140 20 6 1.7377 5.4571 2.8249 21 6 2.0572 -0.7477 -1.2400 22 6 2.8375 -1.9499 -0.6549 23 6 2.2316 -2.0694 0.7667 24 8 2.0188 -0.6963 1.1587 25 1 -0.3633 0.5028 -0.8962 26 1 -0.3633 -1.0276 0.0127 27 1 -0.3633 0.5246 0.8837 28 1 1.6967 1.9529 -0.8940 29 1 3.1400 1.4314 0.0080 30 1 0.9924 1.6703 1.8265 31 1 0.3145 2.4239 3.3508 32 1 -0.5180 3.5810 5.3519 33 1 0.0627 5.9304 5.7580 34 1 4.5228 7.5732 2.8349 35 1 2.3675 5.9793 2.1198 36 1 1.2284 -1.0947 -1.8572 37 1 2.7222 -0.1062 -1.8182 38 1 3.9048 -1.7343 -0.6059 39 1 2.6514 -2.8543 -1.2344 40 1 2.9331 -2.5575 1.4432 41 1 1.2860 -2.6109 0.7366 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000176507633.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:03:28 Heat of formation + Delta-G solvation = -74.087277 kcal Electronic energy + Delta-G solvation = -22665.446503 eV Core-core repulsion = 19316.389356 eV Total energy + Delta-G solvation = -3349.057148 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.20879 -38.86249 -36.93997 -34.57639 -33.67883 -32.49164 -31.37205 -29.96528 -29.38101 -27.14728 -25.70650 -25.05087 -22.41267 -21.75250 -20.91207 -20.24333 -19.38127 -17.77030 -16.76798 -16.22848 -15.60578 -15.39461 -15.30765 -14.86921 -14.48827 -14.22992 -14.04378 -13.65793 -13.25201 -13.05155 -12.73076 -12.56159 -12.46572 -12.37968 -11.97350 -11.85273 -11.60322 -11.32565 -11.12956 -11.07017 -11.03933 -10.90079 -10.69044 -10.45107 -9.97789 -9.81942 -9.63649 -9.18643 -8.95713 -8.56641 -7.57596 -7.47013 -6.75774 -4.37286 2.26940 2.84672 3.10496 3.15486 3.18236 3.52274 3.87116 3.93031 3.96195 4.28806 4.54431 4.56453 4.68792 4.81275 4.90037 5.04427 5.30719 5.38794 5.48700 5.54080 5.58064 5.64484 5.67149 5.75273 5.82324 5.86843 5.95464 6.09062 6.16147 6.33701 6.74806 6.76660 6.96130 7.03570 7.07318 7.25727 7.43073 7.75507 7.81659 7.97626 8.16621 8.24948 8.55307 8.84636 8.88071 9.02805 10.19098 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.027511 B = 0.003541 C = 0.003287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1017.546736 B = 7905.743332 C = 8516.488366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.089 3.911 3 C 0.133 3.867 4 N -0.730 5.730 5 C 0.563 3.437 6 O -0.550 6.550 7 C -0.127 4.127 8 C -0.216 4.216 9 C -0.098 4.098 10 C -0.212 4.212 11 C 0.099 3.901 12 C -0.461 4.461 13 H 0.081 0.919 14 C 0.073 3.927 15 N -0.784 5.784 16 Si 0.910 3.090 17 H -0.260 1.260 18 H -0.274 1.274 19 H -0.271 1.271 20 C -0.092 4.092 21 C -0.144 4.144 22 C -0.155 4.155 23 C 0.045 3.955 24 O -0.361 6.361 25 H 0.069 0.931 26 H 0.059 0.941 27 H 0.067 0.933 28 H 0.074 0.926 29 H 0.069 0.931 30 H 0.402 0.598 31 H 0.090 0.910 32 H 0.093 0.907 33 H 0.095 0.905 34 H 0.283 0.717 35 H 0.134 0.866 36 H 0.080 0.920 37 H 0.082 0.918 38 H 0.078 0.922 39 H 0.079 0.921 40 H 0.092 0.908 41 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.460 -15.557 -7.214 17.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.050 3.950 3 C 0.009 3.991 4 N -0.384 5.384 5 C 0.354 3.646 6 O -0.428 6.428 7 C -0.130 4.130 8 C -0.236 4.236 9 C -0.117 4.117 10 C -0.232 4.232 11 C 0.096 3.904 12 C -0.490 4.490 13 H 0.099 0.901 14 C -0.146 4.146 15 N -0.408 5.408 16 Si 0.734 3.266 17 H -0.184 1.184 18 H -0.200 1.200 19 H -0.196 1.196 20 C -0.112 4.112 21 C -0.182 4.182 22 C -0.193 4.193 23 C -0.031 4.031 24 O -0.280 6.280 25 H 0.088 0.912 26 H 0.078 0.922 27 H 0.086 0.914 28 H 0.092 0.908 29 H 0.087 0.913 30 H 0.239 0.761 31 H 0.108 0.892 32 H 0.111 0.889 33 H 0.114 0.886 34 H 0.095 0.905 35 H 0.151 0.849 36 H 0.098 0.902 37 H 0.101 0.899 38 H 0.097 0.903 39 H 0.097 0.903 40 H 0.110 0.890 41 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -2.663 -15.040 -7.690 17.101 hybrid contribution -0.068 0.300 0.086 0.320 sum -2.731 -14.740 -7.605 16.809 Atomic orbital electron populations 1.22253 0.94311 1.02314 1.03256 1.22400 0.94160 0.92512 0.85966 1.21381 0.99554 0.88816 0.89393 1.45863 1.54396 1.12570 1.25567 1.18848 0.79143 0.80637 0.86008 1.90684 1.37955 1.66785 1.47412 1.19476 1.02752 0.95900 0.94904 1.20362 1.06569 0.98159 0.98486 1.20432 0.99705 0.95002 0.96514 1.21096 1.07527 0.94338 1.00203 1.17605 0.89995 0.93120 0.89677 1.19606 1.05692 0.95523 1.28145 0.90082 1.25966 0.95058 1.00613 0.92973 1.69806 1.05147 1.37308 1.28576 0.86241 0.79135 0.82298 0.78952 1.18370 1.19951 1.19590 1.21627 0.99996 0.92102 0.97490 1.22961 1.00660 0.97167 0.97390 1.23131 1.00954 0.98459 0.96721 1.23538 0.99659 0.84617 0.95333 1.88991 1.85904 1.20421 1.32665 0.91216 0.92173 0.91397 0.90753 0.91300 0.76143 0.89233 0.88923 0.88641 0.90540 0.84886 0.90156 0.89908 0.90346 0.90272 0.88997 0.92291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.66 8.45 37.16 0.31 -1.35 16 2 C 0.09 1.02 0.82 -90.05 -0.07 0.95 16 3 C 0.13 1.97 4.62 -4.05 -0.02 1.95 16 4 N -0.73 -13.00 5.13 -61.24 -0.31 -13.32 16 5 C 0.56 12.88 7.77 -12.31 -0.10 12.78 16 6 O -0.55 -14.24 16.33 5.33 0.09 -14.15 16 7 C -0.13 -3.11 5.87 -105.04 -0.62 -3.73 16 8 C -0.22 -4.72 9.55 -38.92 -0.37 -5.09 16 9 C -0.10 -2.16 10.01 -39.73 -0.40 -2.56 16 10 C -0.21 -5.14 9.78 -38.81 -0.38 -5.52 16 11 C 0.10 2.66 5.57 -106.87 -0.59 2.06 16 12 C -0.46 -12.31 9.05 -37.73 -0.34 -12.65 16 13 H 0.08 2.06 7.90 -52.49 -0.41 1.64 16 14 C 0.07 1.87 5.14 -17.34 -0.09 1.78 16 15 N -0.78 -21.18 10.97 55.55 0.61 -20.57 16 16 Si 0.91 19.06 29.59 -169.99 -5.03 14.02 16 17 H -0.26 -5.33 7.11 56.52 0.40 -4.93 16 18 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 19 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 20 C -0.09 -2.52 8.23 -38.44 -0.32 -2.83 16 21 C -0.14 -1.25 6.28 -25.20 -0.16 -1.40 16 22 C -0.15 -1.20 7.15 -24.72 -0.18 -1.38 16 23 C 0.05 0.41 7.67 38.21 0.29 0.70 16 24 O -0.36 -4.64 10.69 -35.23 -0.38 -5.01 16 25 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.06 0.52 8.13 -51.93 -0.42 0.10 16 27 H 0.07 0.76 6.85 -51.93 -0.36 0.41 16 28 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 29 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 30 H 0.40 6.58 5.25 -40.82 -0.21 6.36 16 31 H 0.09 1.67 6.38 -52.49 -0.33 1.33 16 32 H 0.09 1.73 8.06 -52.49 -0.42 1.30 16 33 H 0.10 2.15 8.06 -52.49 -0.42 1.73 16 34 H 0.28 7.02 8.30 -40.82 -0.34 6.68 16 35 H 0.13 3.93 5.76 -52.49 -0.30 3.63 16 36 H 0.08 0.57 7.70 -51.93 -0.40 0.17 16 37 H 0.08 0.71 7.70 -51.93 -0.40 0.31 16 38 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.08 0.46 8.14 -51.92 -0.42 0.04 16 40 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 LS Contribution 337.06 15.07 5.08 5.08 Total: -1.00 -31.05 337.06 -8.75 -39.80 By element: Atomic # 1 Polarization: 16.20 SS G_CDS: -5.78 Total: 10.42 kcal Atomic # 6 Polarization: -13.25 SS G_CDS: -3.02 Total: -16.28 kcal Atomic # 7 Polarization: -34.18 SS G_CDS: 0.30 Total: -33.88 kcal Atomic # 8 Polarization: -18.88 SS G_CDS: -0.29 Total: -19.17 kcal Atomic # 14 Polarization: 19.06 SS G_CDS: -5.03 Total: 14.02 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -31.05 -8.75 -39.80 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176507633.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.286 kcal (2) G-P(sol) polarization free energy of solvation -31.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds