Wall clock time and date at job start Tue Mar 31 2020 07:03:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.86780 * 2 1 4 4 N 1.46493 * 109.47481 * 59.55140 * 3 2 1 5 5 C 1.34778 * 120.00092 * 179.97438 * 4 3 2 6 6 O 1.21546 * 120.00241 * 0.02562 * 5 4 3 7 7 C 1.47890 * 120.00083 * 180.02562 * 5 4 3 8 8 C 1.39919 * 120.02231 * 0.02562 * 7 5 4 9 9 C 1.38334 * 120.35568 * 180.02562 * 8 7 5 10 10 C 1.37747 * 120.41414 * 0.28129 * 9 8 7 11 11 C 1.40754 * 120.03815 * 359.45056 * 10 9 8 12 12 C 1.41434 * 120.17741 * 180.27357 * 11 10 9 13 13 H 1.08000 * 120.00411 * 335.20745 * 12 11 10 14 14 C 1.39937 * 119.99916 * 155.20872 * 12 11 10 15 15 N 1.30836 * 119.99904 * 342.59461 * 14 12 11 16 16 Si 1.86796 * 120.00350 * 162.60141 * 14 12 11 17 17 H 1.48503 * 109.46665 * 359.97438 * 16 14 12 18 18 H 1.48502 * 109.47568 * 119.99522 * 16 14 12 19 19 H 1.48505 * 109.47100 * 239.99948 * 16 14 12 20 20 C 1.38987 * 120.02616 * 180.02562 * 7 5 4 21 21 C 1.54096 * 110.00440 * 238.91147 * 2 1 3 22 22 C 1.54812 * 104.18660 * 242.53271 * 21 2 1 23 23 C 1.54992 * 102.09212 * 20.88020 * 22 21 2 24 24 O 1.43748 * 109.87938 * 121.00408 * 2 1 3 25 25 H 1.08996 * 109.47238 * 60.70476 * 1 2 3 26 26 H 1.08997 * 109.46929 * 180.70551 * 1 2 3 27 27 H 1.09001 * 109.47053 * 300.69718 * 1 2 3 28 28 H 1.09004 * 109.47033 * 299.55291 * 3 2 1 29 29 H 1.09004 * 109.47326 * 179.55307 * 3 2 1 30 30 H 0.96997 * 120.00203 * 0.02562 * 4 3 2 31 31 H 1.08000 * 119.82575 * 0.04552 * 8 7 5 32 32 H 1.08000 * 119.78870 * 180.02562 * 9 8 7 33 33 H 1.07999 * 119.98587 * 179.72071 * 10 9 8 34 34 H 0.96996 * 120.00123 * 180.02562 * 15 14 12 35 35 H 1.07998 * 120.20456 * 359.95546 * 20 7 5 36 36 H 1.09004 * 110.48982 * 1.20905 * 21 2 1 37 37 H 1.08997 * 110.48846 * 123.85838 * 21 2 1 38 38 H 1.09000 * 110.90759 * 262.68115 * 22 21 2 39 39 H 1.09008 * 110.93405 * 139.09205 * 22 21 2 40 40 H 1.08997 * 110.61700 * 204.46915 * 23 22 21 41 41 H 1.09006 * 110.61713 * 81.47673 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0500 1.4389 0.0000 4 7 1.5577 2.1361 1.1906 5 6 1.8911 3.4246 1.4032 6 8 2.5999 4.0083 0.6067 7 6 1.3946 4.1283 2.6055 8 6 0.5792 3.4567 3.5229 9 6 0.1105 4.1083 4.6495 10 6 0.4361 5.4271 4.8784 11 6 1.2599 6.1174 3.9696 12 6 1.6008 7.4697 4.2048 13 1 0.9580 8.0913 4.8105 14 6 2.7710 8.0025 3.6525 15 7 3.7115 7.2039 3.2174 16 14 2.9903 9.8540 3.5365 17 1 1.7911 10.5302 4.0932 18 1 4.1915 10.2596 4.3098 19 1 3.1624 10.2439 2.1140 20 6 1.7377 5.4571 2.8249 21 6 2.0572 -0.7477 -1.2400 22 6 2.8375 -1.9499 -0.6549 23 6 2.2316 -2.0694 0.7667 24 8 2.0188 -0.6963 1.1587 25 1 -0.3633 0.5028 -0.8962 26 1 -0.3633 -1.0276 0.0127 27 1 -0.3633 0.5246 0.8837 28 1 1.6967 1.9529 -0.8940 29 1 3.1400 1.4314 0.0080 30 1 0.9924 1.6703 1.8265 31 1 0.3145 2.4239 3.3508 32 1 -0.5180 3.5810 5.3519 33 1 0.0627 5.9304 5.7580 34 1 4.5228 7.5732 2.8349 35 1 2.3675 5.9793 2.1198 36 1 1.2284 -1.0947 -1.8572 37 1 2.7222 -0.1062 -1.8182 38 1 3.9048 -1.7343 -0.6059 39 1 2.6514 -2.8543 -1.2344 40 1 2.9331 -2.5575 1.4432 41 1 1.2860 -2.6109 0.7366 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000176507633.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:03:27 Heat of formation + Delta-G solvation = -93.688032 kcal Electronic energy + Delta-G solvation = -22666.296456 eV Core-core repulsion = 19316.389356 eV Total energy + Delta-G solvation = -3349.907100 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.30313 -40.40939 -38.79206 -36.03810 -35.55070 -33.42499 -32.53581 -31.59780 -31.26406 -28.15161 -27.24185 -26.48470 -23.97082 -22.80495 -22.60222 -21.32560 -20.98142 -19.53791 -18.21720 -17.39138 -17.05843 -16.73593 -16.56523 -16.49636 -16.11152 -15.59576 -15.25086 -15.03747 -14.77977 -14.40556 -14.28358 -14.06997 -13.72666 -13.42808 -13.39446 -12.96769 -12.80330 -12.73063 -12.60380 -12.54572 -12.18134 -12.02776 -11.93989 -11.88760 -11.57660 -11.50307 -11.08807 -10.80266 -10.64276 -10.16537 -9.47629 -9.39332 -8.66557 -6.38658 0.36917 0.99753 1.36551 1.46654 1.53322 2.08282 2.19210 2.23013 2.78394 2.86251 3.50054 3.69016 3.72095 3.81731 4.02192 4.07307 4.13743 4.38521 4.41220 4.51995 4.58271 4.61355 4.68406 4.80428 4.85044 4.90029 4.94460 4.95688 5.08427 5.08728 5.18141 5.21295 5.28118 5.30813 5.42155 5.51487 5.85787 5.91827 6.00735 6.04629 6.27531 6.49945 6.66772 6.87492 6.94080 7.28602 8.30659 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.027511 B = 0.003541 C = 0.003287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1017.546736 B = 7905.743332 C = 8516.488366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.093 3.907 3 C 0.127 3.873 4 N -0.707 5.707 5 C 0.558 3.442 6 O -0.591 6.591 7 C -0.139 4.139 8 C -0.199 4.199 9 C -0.095 4.095 10 C -0.216 4.216 11 C 0.068 3.932 12 C -0.496 4.496 13 H 0.085 0.915 14 C 0.028 3.972 15 N -0.827 5.827 16 Si 0.985 3.015 17 H -0.250 1.250 18 H -0.264 1.264 19 H -0.270 1.270 20 C -0.130 4.130 21 C -0.142 4.142 22 C -0.150 4.150 23 C 0.038 3.962 24 O -0.392 6.392 25 H 0.078 0.922 26 H 0.080 0.920 27 H 0.054 0.946 28 H 0.078 0.922 29 H 0.051 0.949 30 H 0.411 0.589 31 H 0.130 0.870 32 H 0.139 0.861 33 H 0.110 0.890 34 H 0.286 0.714 35 H 0.099 0.901 36 H 0.103 0.897 37 H 0.079 0.921 38 H 0.070 0.930 39 H 0.105 0.895 40 H 0.097 0.903 41 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.097 -17.792 -7.139 19.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.054 3.946 3 C 0.003 3.997 4 N -0.359 5.359 5 C 0.348 3.652 6 O -0.473 6.473 7 C -0.142 4.142 8 C -0.219 4.219 9 C -0.112 4.112 10 C -0.236 4.236 11 C 0.066 3.934 12 C -0.526 4.526 13 H 0.103 0.897 14 C -0.187 4.187 15 N -0.452 5.452 16 Si 0.805 3.195 17 H -0.173 1.173 18 H -0.189 1.189 19 H -0.195 1.195 20 C -0.150 4.150 21 C -0.180 4.180 22 C -0.188 4.188 23 C -0.038 4.038 24 O -0.312 6.312 25 H 0.097 0.903 26 H 0.099 0.901 27 H 0.073 0.927 28 H 0.096 0.904 29 H 0.070 0.930 30 H 0.250 0.750 31 H 0.148 0.852 32 H 0.157 0.843 33 H 0.129 0.871 34 H 0.097 0.903 35 H 0.117 0.883 36 H 0.122 0.878 37 H 0.098 0.902 38 H 0.089 0.911 39 H 0.124 0.876 40 H 0.115 0.885 41 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -4.331 -17.338 -7.601 19.420 hybrid contribution 0.373 0.771 0.086 0.860 sum -3.958 -16.567 -7.515 18.618 Atomic orbital electron populations 1.22255 0.93005 1.03628 1.03072 1.22398 0.94992 0.90146 0.87107 1.21638 0.98710 0.91271 0.88058 1.45701 1.53065 1.10793 1.26384 1.18776 0.78991 0.82071 0.85371 1.90656 1.39940 1.68098 1.48616 1.19782 1.02942 0.95347 0.96173 1.20814 1.04161 0.99690 0.97187 1.20913 0.99192 0.94156 0.96984 1.21414 1.06577 0.95558 1.00055 1.17958 0.91213 0.93944 0.90330 1.19894 1.06662 0.96193 1.29808 0.89668 1.26896 0.94256 1.05544 0.91988 1.69908 1.05840 1.39524 1.29968 0.85120 0.79551 0.75941 0.78863 1.17340 1.18855 1.19541 1.21431 1.01950 0.93724 0.97936 1.22995 1.01529 0.97147 0.96331 1.23133 1.00262 0.99107 0.96261 1.23777 1.00889 0.82994 0.96122 1.88946 1.86220 1.22449 1.33614 0.90338 0.90076 0.92684 0.90381 0.93012 0.75023 0.85224 0.84326 0.87143 0.90325 0.88339 0.87808 0.90250 0.91142 0.87642 0.88468 0.90509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.82 8.45 71.98 0.61 -2.21 16 2 C 0.09 1.95 0.82 -10.42 -0.01 1.94 16 3 C 0.13 3.72 4.62 86.38 0.40 4.12 16 4 N -0.71 -24.82 5.13 -465.93 -2.39 -27.21 16 5 C 0.56 26.13 7.77 86.80 0.67 26.80 16 6 O -0.59 -32.17 16.33 -3.86 -0.06 -32.23 16 7 C -0.14 -6.93 5.87 -20.13 -0.12 -7.05 16 8 C -0.20 -8.29 9.55 22.70 0.22 -8.08 16 9 C -0.09 -3.90 10.01 22.18 0.22 -3.67 16 10 C -0.22 -10.37 9.78 22.77 0.22 -10.15 16 11 C 0.07 3.78 5.57 -21.32 -0.12 3.66 16 12 C -0.50 -27.54 9.05 23.47 0.21 -27.33 16 13 H 0.09 4.45 7.90 -2.91 -0.02 4.43 16 14 C 0.03 1.48 5.14 85.25 0.44 1.92 16 15 N -0.83 -47.24 10.97 21.83 0.24 -47.00 16 16 Si 0.99 40.33 29.59 68.60 2.03 42.36 16 17 H -0.25 -9.72 7.11 99.48 0.71 -9.01 16 18 H -0.26 -10.26 7.11 99.48 0.71 -9.55 16 19 H -0.27 -10.92 7.11 99.48 0.71 -10.22 16 20 C -0.13 -7.46 8.23 23.01 0.19 -7.27 16 21 C -0.14 -2.09 6.28 31.58 0.20 -1.90 16 22 C -0.15 -1.91 7.15 31.89 0.23 -1.68 16 23 C 0.04 0.59 7.67 72.66 0.56 1.14 16 24 O -0.39 -9.32 10.69 -148.98 -1.59 -10.91 16 25 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 26 H 0.08 1.09 8.13 -2.39 -0.02 1.07 16 27 H 0.05 1.09 6.85 -2.39 -0.02 1.08 16 28 H 0.08 2.24 8.14 -2.38 -0.02 2.22 16 29 H 0.05 1.70 8.14 -2.38 -0.02 1.68 16 30 H 0.41 12.71 5.25 -92.71 -0.49 12.22 16 31 H 0.13 4.31 6.38 -2.91 -0.02 4.30 16 32 H 0.14 4.46 8.06 -2.91 -0.02 4.44 16 33 H 0.11 4.85 8.06 -2.91 -0.02 4.83 16 34 H 0.29 15.02 8.30 -92.71 -0.77 14.26 16 35 H 0.10 6.28 5.76 -2.91 -0.02 6.26 16 36 H 0.10 1.07 7.70 -2.39 -0.02 1.05 16 37 H 0.08 1.23 7.70 -2.39 -0.02 1.21 16 38 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 39 H 0.11 0.81 8.14 -2.38 -0.02 0.79 16 40 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 41 H 0.08 0.91 8.14 -2.38 -0.02 0.89 16 Total: -1.00 -71.99 337.06 2.70 -69.29 By element: Atomic # 1 Polarization: 34.91 SS G_CDS: 0.55 Total: 35.46 kcal Atomic # 6 Polarization: -33.68 SS G_CDS: 3.92 Total: -29.76 kcal Atomic # 7 Polarization: -72.06 SS G_CDS: -2.15 Total: -74.21 kcal Atomic # 8 Polarization: -41.49 SS G_CDS: -1.65 Total: -43.14 kcal Atomic # 14 Polarization: 40.33 SS G_CDS: 2.03 Total: 42.36 kcal Total: -71.99 2.70 -69.29 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176507633.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.401 kcal (2) G-P(sol) polarization free energy of solvation -71.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.287 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds