Wall clock time and date at job start Tue Mar 31 2020 07:07:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42901 * 109.44537 * 2 1 4 4 C 1.53035 * 109.46408 * 240.02864 * 2 1 3 5 5 C 1.53194 * 109.33882 * 178.59642 * 4 2 1 6 6 N 1.46992 * 108.73638 * 54.62380 * 5 4 2 7 7 C 1.34784 * 120.61579 * 126.40850 * 6 5 4 8 8 O 1.21546 * 119.99706 * 354.21878 * 7 6 5 9 9 C 1.47882 * 120.00152 * 174.21531 * 7 6 5 10 10 C 1.39916 * 120.02577 * 324.58195 * 9 7 6 11 11 C 1.38335 * 120.35596 * 179.71726 * 10 9 7 12 12 C 1.37753 * 120.41370 * 0.55286 * 11 10 9 13 13 C 1.40753 * 120.03465 * 359.72327 * 12 11 10 14 14 C 1.41438 * 120.17376 * 180.02562 * 13 12 11 15 15 H 1.07996 * 120.00277 * 330.71835 * 14 13 12 16 16 C 1.39936 * 119.99958 * 150.71694 * 14 13 12 17 17 N 1.30831 * 120.00047 * 349.37842 * 16 14 13 18 18 Si 1.86802 * 120.00252 * 169.38361 * 16 14 13 19 19 H 1.48503 * 109.46807 * 60.00010 * 18 16 14 20 20 H 1.48498 * 109.47369 * 179.97438 * 18 16 14 21 21 H 1.48501 * 109.46908 * 300.00000 * 18 16 14 22 22 C 1.38996 * 120.02205 * 144.84556 * 9 7 6 23 23 C 1.46931 * 118.75802 * 306.40729 * 6 5 4 24 24 C 1.53044 * 109.45726 * 119.95726 * 2 1 3 25 25 H 1.09000 * 109.46818 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47377 * 299.96997 * 1 2 3 27 27 H 1.09004 * 109.47011 * 59.97382 * 1 2 3 28 28 H 0.96699 * 114.00396 * 60.03102 * 3 2 1 29 29 H 1.08993 * 109.49870 * 298.56447 * 4 2 1 30 30 H 1.08999 * 109.49522 * 58.63285 * 4 2 1 31 31 H 1.09004 * 109.58548 * 174.43786 * 5 4 2 32 32 H 1.08994 * 109.59056 * 294.86460 * 5 4 2 33 33 H 1.07997 * 119.82433 * 359.96711 * 10 9 7 34 34 H 1.07997 * 119.79090 * 180.25458 * 11 10 9 35 35 H 1.07993 * 119.98481 * 179.70186 * 12 11 10 36 36 H 0.97002 * 119.99935 * 179.97438 * 17 16 14 37 37 H 1.07999 * 120.20662 * 0.03531 * 22 9 7 38 38 H 1.08995 * 109.58358 * 293.82322 * 23 6 5 39 39 H 1.08996 * 109.70274 * 173.46808 * 23 6 5 40 40 H 1.08996 * 109.49865 * 301.33988 * 24 2 1 41 41 H 1.09000 * 109.49767 * 61.40857 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0058 1.3475 0.0000 4 6 2.0400 -0.7208 -1.2499 5 6 3.5715 -0.6885 -1.2649 6 7 4.0679 -1.2487 0.0003 7 6 4.9619 -2.2574 0.0004 8 8 5.2857 -2.7826 -1.0468 9 6 5.5488 -2.7250 1.2747 10 6 5.8196 -1.8103 2.2982 11 6 6.3631 -2.2411 3.4951 12 6 6.6547 -3.5733 3.6892 13 6 6.3946 -4.5073 2.6688 14 6 6.6923 -5.8760 2.8651 15 1 7.5000 -6.1643 3.5214 16 6 5.9401 -6.8568 2.2090 17 7 4.8393 -6.5273 1.5833 18 14 6.5075 -8.6364 2.2264 19 1 6.5804 -9.1189 3.6290 20 1 5.5429 -9.4711 1.4660 21 1 7.8498 -8.7342 1.5988 22 6 5.8370 -4.0728 1.4544 23 6 3.5713 -0.6883 1.2645 24 6 2.0398 -0.7206 1.2502 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5133 0.8902 27 1 -0.3633 0.5143 -0.8898 28 1 1.7206 1.8653 0.7653 29 1 1.6980 -1.7557 -1.2381 30 1 1.6569 -0.2212 -2.1397 31 1 3.9414 -1.2844 -2.0993 32 1 3.9143 0.3409 -1.3680 33 1 5.5993 -0.7628 2.1546 34 1 6.5646 -1.5277 4.2805 35 1 7.0834 -3.9013 4.6245 36 1 4.3181 -7.2071 1.1281 37 1 5.6342 -4.7818 0.6653 38 1 3.9142 0.3411 1.3675 39 1 3.9416 -1.2821 2.1002 40 1 1.6571 -0.2205 2.1399 41 1 1.6974 -1.7553 1.2388 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000177737630.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:07:25 Heat of formation + Delta-G solvation = -87.608703 kcal Electronic energy + Delta-G solvation = -23432.896118 eV Core-core repulsion = 20083.252637 eV Total energy + Delta-G solvation = -3349.643481 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.53973 -39.73512 -38.74564 -36.50417 -35.55948 -33.46487 -32.52994 -31.49585 -31.30854 -29.25410 -27.30173 -25.26805 -24.48562 -23.16923 -22.73824 -21.46018 -20.29155 -19.29885 -17.76615 -17.45566 -17.20836 -16.67014 -16.54458 -16.27564 -15.76031 -15.47951 -15.23022 -15.08258 -14.61875 -14.41388 -14.25368 -14.09789 -13.68384 -13.41751 -12.98699 -12.95089 -12.84647 -12.82204 -12.75579 -12.36489 -12.30460 -12.20001 -12.10064 -11.89974 -11.50390 -11.35489 -11.11313 -10.89003 -10.63239 -9.71393 -9.37953 -9.31135 -8.62542 -6.41009 0.44899 0.99757 1.36105 1.47415 1.48879 1.89448 2.10800 2.19785 2.75824 3.31651 3.60157 3.65899 3.71844 3.87315 3.96727 4.07965 4.31930 4.37716 4.46773 4.54272 4.61099 4.68476 4.74765 4.79171 4.86197 4.88508 4.96697 4.99351 5.06466 5.10474 5.18792 5.28446 5.30870 5.33230 5.50587 5.62950 5.83743 5.93966 6.03902 6.26948 6.38731 6.60568 6.88607 6.93400 6.97341 7.19530 8.33860 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.021837 B = 0.004439 C = 0.004160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1281.943516 B = 6306.092079 C = 6729.815448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.138 3.862 3 O -0.565 6.565 4 C -0.118 4.118 5 C 0.115 3.885 6 N -0.601 5.601 7 C 0.559 3.441 8 O -0.596 6.596 9 C -0.134 4.134 10 C -0.194 4.194 11 C -0.096 4.096 12 C -0.211 4.211 13 C 0.070 3.930 14 C -0.500 4.500 15 H 0.083 0.917 16 C 0.028 3.972 17 N -0.838 5.838 18 Si 0.984 3.016 19 H -0.252 1.252 20 H -0.272 1.272 21 H -0.262 1.262 22 C -0.127 4.127 23 C 0.094 3.906 24 C -0.158 4.158 25 H 0.060 0.940 26 H 0.078 0.922 27 H 0.067 0.933 28 H 0.392 0.608 29 H 0.065 0.935 30 H 0.095 0.905 31 H 0.064 0.936 32 H 0.083 0.917 33 H 0.137 0.863 34 H 0.142 0.858 35 H 0.111 0.889 36 H 0.284 0.716 37 H 0.092 0.908 38 H 0.091 0.909 39 H 0.097 0.903 40 H 0.108 0.892 41 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.430 13.351 1.075 16.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.097 3.903 3 O -0.374 6.374 4 C -0.156 4.156 5 C -0.007 4.007 6 N -0.333 5.333 7 C 0.351 3.649 8 O -0.479 6.479 9 C -0.137 4.137 10 C -0.214 4.214 11 C -0.114 4.114 12 C -0.230 4.230 13 C 0.068 3.932 14 C -0.530 4.530 15 H 0.101 0.899 16 C -0.185 4.185 17 N -0.464 5.464 18 Si 0.805 3.195 19 H -0.176 1.176 20 H -0.197 1.197 21 H -0.187 1.187 22 C -0.148 4.148 23 C -0.027 4.027 24 C -0.196 4.196 25 H 0.079 0.921 26 H 0.097 0.903 27 H 0.086 0.914 28 H 0.242 0.758 29 H 0.084 0.916 30 H 0.113 0.887 31 H 0.083 0.917 32 H 0.101 0.899 33 H 0.155 0.845 34 H 0.159 0.841 35 H 0.129 0.871 36 H 0.095 0.905 37 H 0.110 0.890 38 H 0.109 0.891 39 H 0.115 0.885 40 H 0.127 0.873 41 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -9.218 12.812 -0.157 15.785 hybrid contribution -0.043 -1.131 0.163 1.144 sum -9.261 11.681 0.006 14.907 Atomic orbital electron populations 1.22410 0.93882 1.02918 1.03587 1.20993 0.93374 0.82391 0.93549 1.86517 1.77571 1.22662 1.50624 1.21899 0.94297 1.00378 0.99002 1.21551 0.94788 0.98758 0.85637 1.48013 1.42174 1.34340 1.08785 1.18960 0.78598 0.78514 0.88876 1.90634 1.63906 1.58183 1.35132 1.19704 1.04778 0.95039 0.94197 1.20989 1.08147 0.98299 0.93926 1.20940 0.98119 0.95187 0.97112 1.21464 1.09027 0.94186 0.98372 1.17917 0.90559 0.94198 0.90524 1.19842 1.15949 0.91187 1.25999 0.89869 1.26804 0.93358 1.06122 0.92208 1.69858 1.12241 1.37717 1.26628 0.85218 0.78946 0.75507 0.79855 1.17593 1.19691 1.18690 1.21343 1.02744 0.93116 0.97554 1.22350 0.94620 1.00043 0.85693 1.22644 0.95178 1.01740 1.00044 0.92063 0.90274 0.91375 0.75827 0.91635 0.88654 0.91699 0.89893 0.84546 0.84076 0.87112 0.90534 0.88961 0.89103 0.88504 0.87326 0.92474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.49 8.81 71.98 0.63 -1.86 16 2 C 0.14 2.64 0.98 -10.77 -0.01 2.63 16 3 O -0.57 -9.76 11.71 -148.98 -1.74 -11.51 16 4 C -0.12 -2.85 5.11 30.67 0.16 -2.70 16 5 C 0.11 3.52 6.21 86.35 0.54 4.05 16 6 N -0.60 -21.35 2.97 -822.09 -2.44 -23.80 16 7 C 0.56 26.18 7.38 86.80 0.64 26.82 16 8 O -0.60 -32.44 16.24 -3.86 -0.06 -32.50 16 9 C -0.13 -6.51 5.28 -20.14 -0.11 -6.62 16 10 C -0.19 -7.76 7.36 22.70 0.17 -7.60 16 11 C -0.10 -3.75 10.01 22.18 0.22 -3.52 16 12 C -0.21 -9.77 9.78 22.77 0.22 -9.54 16 13 C 0.07 3.83 5.54 -21.32 -0.12 3.71 16 14 C -0.50 -27.39 9.06 23.47 0.21 -27.18 16 15 H 0.08 4.29 7.87 -2.91 -0.02 4.27 16 16 C 0.03 1.49 5.25 85.25 0.45 1.93 16 17 N -0.84 -46.72 10.87 21.82 0.24 -46.48 16 18 Si 0.98 39.97 29.57 68.60 2.03 42.00 16 19 H -0.25 -9.59 7.11 99.48 0.71 -8.89 16 20 H -0.27 -10.65 7.11 99.48 0.71 -9.95 16 21 H -0.26 -10.50 7.11 99.48 0.71 -9.79 16 22 C -0.13 -7.15 8.21 23.01 0.19 -6.97 16 23 C 0.09 2.59 4.53 86.36 0.39 2.98 16 24 C -0.16 -3.41 5.08 30.67 0.16 -3.26 16 25 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 26 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 27 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 28 H 0.39 3.48 9.04 -74.06 -0.67 2.81 16 29 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 30 H 0.10 1.96 8.14 -2.39 -0.02 1.94 16 31 H 0.06 2.29 7.00 -2.38 -0.02 2.28 16 32 H 0.08 2.33 7.81 -2.39 -0.02 2.31 16 33 H 0.14 4.43 6.03 -2.91 -0.02 4.42 16 34 H 0.14 4.24 8.06 -2.91 -0.02 4.21 16 35 H 0.11 4.70 8.06 -2.91 -0.02 4.68 16 36 H 0.28 14.64 8.30 -92.71 -0.77 13.87 16 37 H 0.09 5.82 6.19 -2.91 -0.02 5.80 16 38 H 0.09 2.07 7.71 -2.39 -0.02 2.05 16 39 H 0.10 3.04 4.47 -2.39 -0.01 3.03 16 40 H 0.11 1.64 8.14 -2.39 -0.02 1.62 16 41 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 Total: -1.00 -70.93 328.79 2.13 -68.80 By element: Atomic # 1 Polarization: 30.21 SS G_CDS: 0.38 Total: 30.59 kcal Atomic # 6 Polarization: -30.85 SS G_CDS: 3.74 Total: -27.11 kcal Atomic # 7 Polarization: -68.07 SS G_CDS: -2.21 Total: -70.28 kcal Atomic # 8 Polarization: -42.20 SS G_CDS: -1.81 Total: -44.00 kcal Atomic # 14 Polarization: 39.97 SS G_CDS: 2.03 Total: 42.00 kcal Total: -70.93 2.13 -68.80 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177737630.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.805 kcal (2) G-P(sol) polarization free energy of solvation -70.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.804 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds