Wall clock time and date at job start Tue Mar 31 2020 07:09:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46507 * 109.54220 * 2 1 4 4 C 1.34772 * 119.99999 * 59.82056 * 3 2 1 5 5 O 1.21549 * 120.00177 * 0.02562 * 4 3 2 6 6 C 1.47890 * 119.99901 * 179.97438 * 4 3 2 7 7 C 1.39920 * 120.02627 * 0.02562 * 6 4 3 8 8 C 1.38323 * 120.35677 * 179.97438 * 7 6 4 9 9 C 1.37750 * 120.41821 * 0.02562 * 8 7 6 10 10 C 1.40754 * 120.03537 * 359.97438 * 9 8 7 11 11 C 1.41436 * 120.17885 * 179.74690 * 10 9 8 12 12 H 1.08004 * 119.99745 * 335.36207 * 11 10 9 13 13 C 1.39931 * 120.00574 * 155.36519 * 11 10 9 14 14 N 1.30831 * 119.99634 * 342.16424 * 13 11 10 15 15 Si 1.86796 * 120.00412 * 162.16331 * 13 11 10 16 16 H 1.48509 * 109.46824 * 0.02562 * 15 13 11 17 17 H 1.48502 * 109.47059 * 119.99735 * 15 13 11 18 18 H 1.48496 * 109.47454 * 240.00327 * 15 13 11 19 19 C 1.39000 * 120.02290 * 179.97438 * 6 4 3 20 20 C 1.53168 * 109.61979 * 120.22031 * 2 1 3 21 21 C 1.53090 * 109.16497 * 176.88969 * 20 2 1 22 22 O 1.42895 * 109.41811 * 302.39252 * 21 20 2 23 23 C 1.42904 * 114.09542 * 61.15792 * 22 21 20 24 24 C 1.53089 * 109.41638 * 298.84074 * 23 22 21 25 25 H 1.09000 * 109.47203 * 60.00038 * 1 2 3 26 26 H 1.08996 * 109.47075 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47010 * 300.00067 * 1 2 3 28 28 H 0.97001 * 119.99393 * 239.82605 * 3 2 1 29 29 H 1.07996 * 119.81697 * 359.97438 * 7 6 4 30 30 H 1.08004 * 119.79145 * 179.97438 * 8 7 6 31 31 H 1.07992 * 119.98339 * 179.97438 * 9 8 7 32 32 H 0.97000 * 119.99494 * 179.97438 * 14 13 11 33 33 H 1.07998 * 120.20174 * 0.02935 * 19 6 4 34 34 H 1.09000 * 109.52682 * 296.80231 * 20 2 1 35 35 H 1.09008 * 109.52303 * 56.98558 * 20 2 1 36 36 H 1.09003 * 109.47886 * 182.40951 * 21 20 2 37 37 H 1.08999 * 109.49072 * 62.38632 * 21 20 2 38 38 H 1.09006 * 109.48365 * 178.86157 * 23 22 21 39 39 H 1.08997 * 109.49310 * 58.82972 * 23 22 21 40 40 H 1.09008 * 109.52630 * 297.70574 * 24 23 22 41 41 H 1.09000 * 109.52438 * 177.51342 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0201 1.3807 0.0000 4 6 1.6926 2.2120 1.0090 5 8 0.9910 1.8162 1.9192 6 6 2.1878 3.6055 1.0092 7 6 2.9959 4.0616 -0.0380 8 6 3.4623 5.3638 -0.0449 9 6 3.1375 6.2264 0.9787 10 6 2.3257 5.7856 2.0407 11 6 1.9947 6.6672 3.0960 12 1 2.6375 7.5055 3.3210 13 6 0.8346 6.4533 3.8487 14 7 -0.1126 5.6792 3.3848 15 14 0.6384 7.2729 5.5157 16 1 1.8417 8.0925 5.8090 17 1 -0.5627 8.1461 5.4997 18 1 0.4802 6.2325 6.5634 19 6 1.8498 4.4635 2.0493 20 6 2.0444 -0.7262 1.2467 21 6 3.5732 -0.7882 1.1973 22 8 3.9834 -1.4476 -0.0022 23 6 3.5714 -0.7876 -1.2009 24 6 2.0425 -0.7256 -1.2480 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 2.5803 1.6964 -0.7263 29 1 3.2568 3.3933 -0.8452 30 1 4.0859 5.7061 -0.8576 31 1 3.5059 7.2415 0.9664 32 1 -0.9166 5.5307 3.9067 33 1 1.2260 4.1158 2.8595 34 1 1.7304 -0.1849 2.1391 35 1 1.6394 -1.7379 1.2720 36 1 3.9426 -1.3415 2.0608 37 1 3.9789 0.2233 1.2131 38 1 3.9395 -1.3404 -2.0653 39 1 3.9769 0.2240 -1.2169 40 1 1.6374 -1.7373 -1.2731 41 1 1.7272 -0.1837 -2.1396 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000178662990.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:09:06 Heat of formation + Delta-G solvation = -73.223746 kcal Electronic energy + Delta-G solvation = -23467.801177 eV Core-core repulsion = 20118.781475 eV Total energy + Delta-G solvation = -3349.019702 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.44794 -38.45331 -37.03235 -35.21252 -33.79304 -31.87445 -31.17023 -29.75463 -29.42029 -28.26763 -25.34913 -23.73372 -23.33586 -22.47454 -21.01028 -19.95196 -18.91866 -17.83836 -16.57309 -16.01537 -15.90508 -15.42771 -15.16966 -14.76585 -14.73985 -14.31210 -13.96878 -13.61576 -13.19565 -12.85408 -12.72152 -12.56770 -12.49726 -12.11596 -11.91985 -11.76874 -11.63703 -11.34943 -11.18027 -11.09280 -10.76626 -10.59549 -10.51368 -10.36799 -9.99023 -9.71620 -9.59092 -9.24503 -8.86423 -8.64067 -7.65864 -7.55005 -6.83168 -4.44258 2.17951 2.78095 3.06289 3.10857 3.12707 3.59921 3.82992 3.87399 3.90078 4.56117 4.61118 4.82297 4.84895 5.02657 5.15367 5.38422 5.47181 5.57112 5.61170 5.63367 5.76738 5.82287 5.85293 5.88324 6.03124 6.06717 6.12336 6.24370 6.30310 6.49801 6.69133 6.91865 6.96781 6.99962 7.17856 7.18476 7.35478 7.67099 7.73902 7.89624 8.07891 8.16740 8.48012 8.77730 8.80565 8.94176 10.11660 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.022417 B = 0.004445 C = 0.004083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1248.757990 B = 6298.088917 C = 6856.730101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.177 3.823 3 N -0.730 5.730 4 C 0.568 3.432 5 O -0.541 6.541 6 C -0.129 4.129 7 C -0.219 4.219 8 C -0.097 4.097 9 C -0.212 4.212 10 C 0.099 3.901 11 C -0.460 4.460 12 H 0.081 0.919 13 C 0.074 3.926 14 N -0.783 5.783 15 Si 0.909 3.091 16 H -0.260 1.260 17 H -0.274 1.274 18 H -0.270 1.270 19 C -0.092 4.092 20 C -0.166 4.166 21 C 0.062 3.938 22 O -0.385 6.385 23 C 0.060 3.940 24 C -0.157 4.157 25 H 0.054 0.946 26 H 0.057 0.943 27 H 0.083 0.917 28 H 0.396 0.604 29 H 0.088 0.912 30 H 0.092 0.908 31 H 0.096 0.904 32 H 0.284 0.716 33 H 0.134 0.866 34 H 0.099 0.901 35 H 0.073 0.927 36 H 0.091 0.909 37 H 0.054 0.946 38 H 0.093 0.907 39 H 0.051 0.949 40 H 0.084 0.916 41 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.186 -10.246 -6.751 12.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.091 3.909 3 N -0.385 5.385 4 C 0.359 3.641 5 O -0.419 6.419 6 C -0.133 4.133 7 C -0.239 4.239 8 C -0.116 4.116 9 C -0.232 4.232 10 C 0.096 3.904 11 C -0.489 4.489 12 H 0.100 0.900 13 C -0.145 4.145 14 N -0.408 5.408 15 Si 0.733 3.267 16 H -0.183 1.183 17 H -0.199 1.199 18 H -0.195 1.195 19 C -0.112 4.112 20 C -0.204 4.204 21 C -0.014 4.014 22 O -0.304 6.304 23 C -0.017 4.017 24 C -0.195 4.195 25 H 0.073 0.927 26 H 0.076 0.924 27 H 0.102 0.898 28 H 0.232 0.768 29 H 0.106 0.894 30 H 0.111 0.889 31 H 0.114 0.886 32 H 0.095 0.905 33 H 0.152 0.848 34 H 0.117 0.883 35 H 0.091 0.909 36 H 0.109 0.891 37 H 0.072 0.928 38 H 0.111 0.889 39 H 0.069 0.931 40 H 0.103 0.897 41 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 2.531 -10.794 -6.039 12.625 hybrid contribution -0.163 0.812 0.192 0.850 sum 2.368 -9.982 -5.847 11.808 Atomic orbital electron populations 1.22199 0.94114 1.01797 1.03884 1.20202 0.94398 0.81689 0.94598 1.46142 1.54771 1.11077 1.26492 1.18779 0.78882 0.85770 0.80691 1.90626 1.37845 1.77197 1.36230 1.19504 1.02912 0.92082 0.98757 1.20321 1.07010 0.96681 0.99908 1.20431 0.99598 0.93780 0.97748 1.21102 1.07660 0.98325 0.96122 1.17610 0.89956 0.91576 0.91233 1.19626 1.06230 1.10750 1.12259 0.90041 1.25960 0.94922 0.94366 0.99290 1.69801 1.05146 1.29399 1.36409 0.86246 0.79217 0.79701 0.81535 1.18314 1.19902 1.19533 1.21631 0.99990 0.92125 0.97458 1.22604 0.96347 1.01076 1.00387 1.22571 0.94166 0.97718 0.86977 1.87889 1.77188 1.51440 1.13861 1.22548 0.93415 0.97732 0.88008 1.22494 0.97214 1.01891 0.97931 0.92707 0.92387 0.89793 0.76780 0.89436 0.88947 0.88629 0.90500 0.84848 0.88300 0.90864 0.89067 0.92755 0.88893 0.93092 0.89697 0.90300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.30 8.42 37.16 0.31 -1.99 16 2 C 0.18 2.44 0.66 -131.63 -0.09 2.35 16 3 N -0.73 -11.61 4.18 -48.35 -0.20 -11.81 16 4 C 0.57 11.78 7.19 -12.31 -0.09 11.69 16 5 O -0.54 -12.56 12.55 5.32 0.07 -12.50 16 6 C -0.13 -2.97 5.87 -105.03 -0.62 -3.59 16 7 C -0.22 -4.52 9.55 -38.92 -0.37 -4.89 16 8 C -0.10 -2.05 10.01 -39.73 -0.40 -2.45 16 9 C -0.21 -4.99 9.78 -38.81 -0.38 -5.37 16 10 C 0.10 2.58 5.57 -106.87 -0.59 1.99 16 11 C -0.46 -11.98 9.05 -37.73 -0.34 -12.32 16 12 H 0.08 2.02 7.91 -52.48 -0.41 1.61 16 13 C 0.07 1.85 5.14 -17.34 -0.09 1.76 16 14 N -0.78 -20.53 10.98 55.55 0.61 -19.92 16 15 Si 0.91 18.61 29.59 -169.99 -5.03 13.58 16 16 H -0.26 -5.21 7.11 56.52 0.40 -4.81 16 17 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 18 H -0.27 -5.51 7.11 56.52 0.40 -5.10 16 19 C -0.09 -2.41 8.24 -38.44 -0.32 -2.72 16 20 C -0.17 -2.35 4.77 -26.60 -0.13 -2.47 16 21 C 0.06 0.84 6.68 37.20 0.25 1.09 16 22 O -0.38 -5.09 10.77 -35.23 -0.38 -5.47 16 23 C 0.06 0.65 6.67 37.20 0.25 0.89 16 24 C -0.16 -1.67 4.96 -26.59 -0.13 -1.80 16 25 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 26 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.08 1.47 6.16 -51.93 -0.32 1.15 16 28 H 0.40 5.60 5.54 -40.82 -0.23 5.38 16 29 H 0.09 1.49 6.38 -52.49 -0.33 1.15 16 30 H 0.09 1.65 8.06 -52.48 -0.42 1.23 16 31 H 0.10 2.10 8.06 -52.49 -0.42 1.67 16 32 H 0.28 6.82 8.30 -40.82 -0.34 6.48 16 33 H 0.13 3.78 5.76 -52.49 -0.30 3.47 16 34 H 0.10 1.68 6.14 -51.93 -0.32 1.36 16 35 H 0.07 0.93 8.14 -51.92 -0.42 0.51 16 36 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 37 H 0.05 0.81 7.75 -51.93 -0.40 0.41 16 38 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.05 0.55 7.09 -51.93 -0.37 0.18 16 40 H 0.08 0.83 8.14 -51.92 -0.42 0.41 16 41 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 LS Contribution 326.06 15.07 4.91 4.91 Total: -1.00 -28.66 326.06 -8.38 -37.04 By element: Atomic # 1 Polarization: 17.62 SS G_CDS: -5.63 Total: 11.99 kcal Atomic # 6 Polarization: -15.08 SS G_CDS: -2.73 Total: -17.82 kcal Atomic # 7 Polarization: -32.14 SS G_CDS: 0.41 Total: -31.73 kcal Atomic # 8 Polarization: -17.66 SS G_CDS: -0.31 Total: -17.97 kcal Atomic # 14 Polarization: 18.61 SS G_CDS: -5.03 Total: 13.58 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -28.66 -8.38 -37.04 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178662990.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.187 kcal (2) G-P(sol) polarization free energy of solvation -28.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds