Wall clock time and date at job start Tue Mar 31 2020 07:04:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 115.55915 * 2 1 4 4 C 1.53076 * 117.51366 * 214.30575 * 2 1 3 5 5 C 1.53001 * 117.50282 * 145.69621 * 2 1 3 6 6 H 1.09002 * 117.49780 * 214.99991 * 5 2 1 7 7 C 1.50696 * 117.49617 * 359.97438 * 5 2 1 8 8 O 1.21284 * 120.00080 * 359.91344 * 7 5 2 9 9 N 1.34772 * 119.99886 * 179.91568 * 7 5 2 10 10 C 1.46508 * 120.00227 * 180.02562 * 9 7 5 11 11 C 1.50700 * 109.47297 * 180.02562 * 10 9 7 12 12 C 1.38301 * 119.93103 * 90.00004 * 11 10 9 13 13 C 1.38096 * 120.06406 * 180.02562 * 12 11 10 14 14 C 1.38881 * 119.93523 * 359.97438 * 13 12 11 15 15 O 1.35754 * 120.06804 * 179.97438 * 14 13 12 16 16 C 1.34824 * 117.00276 * 5.53620 * 15 14 13 17 17 H 1.08005 * 119.99819 * 354.94472 * 16 15 14 18 18 C 1.38651 * 120.00108 * 174.94196 * 16 15 14 19 19 N 1.31558 * 120.00097 * 180.02562 * 18 16 15 20 20 Si 1.86801 * 119.99996 * 359.72385 * 18 16 15 21 21 H 1.48502 * 109.46987 * 89.99932 * 20 18 16 22 22 H 1.48492 * 109.47313 * 210.00058 * 20 18 16 23 23 H 1.48494 * 109.47070 * 330.00254 * 20 18 16 24 24 C 1.38877 * 119.86094 * 0.26449 * 14 13 12 25 25 C 1.38106 * 119.92818 * 359.48434 * 24 14 13 26 26 H 1.08998 * 109.46790 * 274.30628 * 1 2 3 27 27 H 1.08994 * 109.47092 * 34.30394 * 1 2 3 28 28 H 1.08996 * 109.46699 * 154.31062 * 1 2 3 29 29 H 1.09000 * 109.47427 * 205.69060 * 3 2 1 30 30 H 1.08995 * 109.47459 * 325.69400 * 3 2 1 31 31 H 1.09001 * 109.46810 * 85.69226 * 3 2 1 32 32 H 1.09001 * 117.49542 * 145.03645 * 4 2 1 33 33 H 1.09006 * 117.53308 * 359.97438 * 4 2 1 34 34 H 0.97002 * 120.00431 * 0.02562 * 9 7 5 35 35 H 1.08998 * 109.47015 * 59.99306 * 10 9 7 36 36 H 1.09005 * 109.46747 * 299.99823 * 10 9 7 37 37 H 1.07992 * 119.96684 * 359.97438 * 12 11 10 38 38 H 1.08008 * 120.03430 * 180.02562 * 13 12 11 39 39 H 0.97002 * 119.99765 * 179.97438 * 19 18 16 40 40 H 1.07992 * 120.03738 * 179.72344 * 24 14 13 41 41 H 1.07996 * 119.96435 * 180.23834 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1901 1.3803 0.0000 4 6 2.2372 -1.1215 -0.7652 5 6 2.2366 -1.1210 0.7648 6 1 3.1715 -0.8751 1.2684 7 6 1.3722 -2.1404 1.4610 8 8 0.1640 -2.0519 1.4031 9 7 1.9418 -3.1504 2.1480 10 6 1.1015 -4.1418 2.8244 11 6 1.9772 -5.1557 3.5144 12 6 2.3792 -4.9450 4.8208 13 6 3.1822 -5.8720 5.4556 14 6 3.5855 -7.0170 4.7810 15 8 4.3753 -7.9299 5.4022 16 6 4.6386 -7.7236 6.7083 17 1 4.2951 -6.8213 7.1924 18 6 5.3501 -8.6698 7.4300 19 7 5.6066 -8.4687 8.7045 20 14 5.9374 -10.2339 6.5945 21 1 7.2910 -10.0128 6.0252 22 1 5.9925 -11.3355 7.5888 23 1 4.9956 -10.5969 5.5053 24 6 3.1842 -7.2232 3.4675 25 6 2.3770 -6.2949 2.8399 26 1 -0.3633 0.0772 1.0248 27 1 -0.3633 0.8489 -0.5791 28 1 -0.3632 -0.9261 -0.4455 29 1 3.1823 1.3086 -0.4455 30 1 1.5811 2.0743 -0.5792 31 1 2.2772 1.7413 1.0248 32 1 3.1724 -0.8755 -1.2681 33 1 1.6127 -1.8597 -1.2684 34 1 2.9081 -3.2209 2.1947 35 1 0.4710 -4.6446 2.0911 36 1 0.4733 -3.6427 3.5623 37 1 2.0656 -4.0543 5.3448 38 1 3.4955 -5.7073 6.4760 39 1 6.1041 -9.1309 9.2094 40 1 3.4999 -8.1103 2.9388 41 1 2.0614 -6.4565 1.8198 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000179140890.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:04:29 Heat of formation + Delta-G solvation = -22.764640 kcal Electronic energy + Delta-G solvation = -21711.787111 eV Core-core repulsion = 18364.955480 eV Total energy + Delta-G solvation = -3346.831631 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.31443 -39.32088 -37.65338 -36.80013 -34.43661 -32.49369 -30.57997 -30.34790 -29.38826 -27.62951 -26.34074 -24.96607 -23.37288 -22.20209 -20.64155 -20.51456 -19.26941 -18.00235 -17.45979 -17.15212 -15.86170 -15.42361 -15.04161 -14.77620 -14.35071 -14.17224 -14.12208 -13.88205 -13.78240 -13.51976 -13.24933 -12.85558 -12.74148 -12.69951 -12.28919 -12.19926 -12.07369 -11.93383 -11.52252 -11.41047 -10.97072 -10.88138 -10.77964 -10.42349 -10.23457 -10.07538 -9.56323 -9.49833 -8.98654 -8.96145 -8.39936 -7.49552 -6.51292 -4.18418 1.93474 2.00712 2.47340 3.15467 3.19162 3.26853 3.33553 3.57741 4.15360 4.35247 4.41252 4.52104 4.60938 4.72174 4.86014 4.96412 5.01303 5.14715 5.33037 5.34096 5.41822 5.45365 5.54151 5.67603 5.69898 5.71370 5.79657 5.84814 5.86905 5.99244 6.01332 6.22853 6.33207 6.43355 6.52174 6.65936 6.88276 7.10655 7.16969 7.47899 7.58452 7.69224 7.92796 8.26285 8.83170 9.43686 10.55850 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.036593 B = 0.002579 C = 0.002565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 764.992800 B =10853.861147 C =10912.336421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.096 4.096 3 C -0.117 4.117 4 C -0.147 4.147 5 C -0.189 4.189 6 H 0.121 0.879 7 C 0.538 3.462 8 O -0.542 6.542 9 N -0.719 5.719 10 C 0.178 3.822 11 C -0.206 4.206 12 C -0.052 4.052 13 C -0.224 4.224 14 C 0.166 3.834 15 O -0.213 6.213 16 C -0.392 4.392 17 H 0.108 0.892 18 C 0.065 3.935 19 N -0.875 5.875 20 Si 0.906 3.094 21 H -0.273 1.273 22 H -0.281 1.281 23 H -0.259 1.259 24 C -0.195 4.195 25 C -0.056 4.056 26 H 0.067 0.933 27 H 0.047 0.953 28 H 0.064 0.936 29 H 0.058 0.942 30 H 0.064 0.936 31 H 0.061 0.939 32 H 0.102 0.898 33 H 0.098 0.902 34 H 0.402 0.598 35 H 0.066 0.934 36 H 0.067 0.933 37 H 0.111 0.889 38 H 0.135 0.865 39 H 0.281 0.719 40 H 0.118 0.882 41 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.170 13.787 -16.026 21.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.096 4.096 3 C -0.174 4.174 4 C -0.185 4.185 5 C -0.210 4.210 6 H 0.139 0.861 7 C 0.325 3.675 8 O -0.420 6.420 9 N -0.370 5.370 10 C 0.056 3.944 11 C -0.207 4.207 12 C -0.071 4.071 13 C -0.243 4.243 14 C 0.113 3.887 15 O -0.117 6.117 16 C -0.467 4.467 17 H 0.125 0.875 18 C -0.140 4.140 19 N -0.512 5.512 20 Si 0.732 3.268 21 H -0.198 1.198 22 H -0.207 1.207 23 H -0.183 1.183 24 C -0.214 4.214 25 C -0.075 4.075 26 H 0.086 0.914 27 H 0.066 0.934 28 H 0.083 0.917 29 H 0.077 0.923 30 H 0.083 0.917 31 H 0.080 0.920 32 H 0.121 0.879 33 H 0.117 0.883 34 H 0.236 0.764 35 H 0.085 0.915 36 H 0.085 0.915 37 H 0.129 0.871 38 H 0.152 0.848 39 H 0.091 0.909 40 H 0.136 0.864 41 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -5.835 13.523 -15.900 21.673 hybrid contribution 0.989 -0.785 0.155 1.272 sum -4.846 12.737 -15.746 20.824 Atomic orbital electron populations 1.21342 0.90659 1.01281 1.02610 1.21592 0.95995 0.90507 1.01526 1.21399 0.99924 0.93835 1.02212 1.23217 1.02776 1.01544 0.90953 1.22395 1.02013 1.00842 0.95745 0.86079 1.19678 0.88109 0.81260 0.78457 1.90687 1.14551 1.75049 1.61744 1.46298 1.10838 1.27193 1.52671 1.19986 0.91539 0.87648 0.95241 1.19285 1.07582 0.98111 0.95760 1.20699 0.95319 0.97586 0.93518 1.21282 1.04815 0.96004 1.02201 1.19182 0.88860 0.88820 0.91797 1.83571 1.57784 1.44709 1.25634 1.20789 1.36455 1.08107 0.81363 0.87497 1.24492 0.95943 0.98777 0.94740 1.69644 1.38356 1.36508 1.06735 0.86168 0.79841 0.81298 0.79541 1.19801 1.20696 1.18309 1.20210 1.05223 1.02061 0.93924 1.20533 0.95819 0.92892 0.98262 0.91385 0.93437 0.91713 0.92303 0.91691 0.91968 0.87938 0.88314 0.76384 0.91533 0.91492 0.87114 0.84782 0.90892 0.86361 0.86798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.06 8.09 37.16 0.30 -0.76 16 2 C -0.10 -0.87 2.70 -154.47 -0.42 -1.29 16 3 C -0.12 -0.82 9.85 37.16 0.37 -0.45 16 4 C -0.15 -1.23 9.53 -26.69 -0.25 -1.49 16 5 C -0.19 -1.82 5.91 -91.77 -0.54 -2.37 16 6 H 0.12 0.98 8.14 -51.93 -0.42 0.56 16 7 C 0.54 6.77 7.59 -10.99 -0.08 6.69 16 8 O -0.54 -8.38 13.10 5.55 0.07 -8.31 16 9 N -0.72 -8.64 5.55 -61.47 -0.34 -8.98 16 10 C 0.18 2.39 5.80 -5.19 -0.03 2.36 16 11 C -0.21 -3.15 5.25 -104.58 -0.55 -3.70 16 12 C -0.05 -0.88 9.69 -39.61 -0.38 -1.27 16 13 C -0.22 -4.55 9.17 -39.40 -0.36 -4.91 16 14 C 0.17 3.65 6.65 -39.11 -0.26 3.39 16 15 O -0.21 -5.40 8.59 0.05 0.00 -5.40 16 16 C -0.39 -10.69 9.95 30.88 0.31 -10.38 16 17 H 0.11 2.97 5.44 -52.48 -0.29 2.69 16 18 C 0.06 1.76 5.49 -17.52 -0.10 1.67 16 19 N -0.88 -24.68 13.96 55.48 0.77 -23.91 16 20 Si 0.91 21.07 28.62 -169.99 -4.86 16.20 16 21 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 22 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 23 H -0.26 -6.04 7.11 56.52 0.40 -5.64 16 24 C -0.19 -3.62 9.99 -39.39 -0.39 -4.01 16 25 C -0.06 -0.88 9.69 -39.61 -0.38 -1.27 16 26 H 0.07 0.82 7.25 -51.93 -0.38 0.44 16 27 H 0.05 0.41 7.92 -51.93 -0.41 -0.01 16 28 H 0.06 0.76 7.02 -51.93 -0.36 0.39 16 29 H 0.06 0.35 7.90 -51.93 -0.41 -0.06 16 30 H 0.06 0.40 7.92 -51.93 -0.41 -0.01 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.10 0.67 8.05 -51.93 -0.42 0.25 16 33 H 0.10 0.89 8.05 -51.93 -0.42 0.47 16 34 H 0.40 4.29 8.46 -40.82 -0.35 3.95 16 35 H 0.07 0.90 8.08 -51.93 -0.42 0.48 16 36 H 0.07 0.93 8.08 -51.93 -0.42 0.51 16 37 H 0.11 1.64 8.06 -52.49 -0.42 1.22 16 38 H 0.13 2.89 5.64 -52.48 -0.30 2.60 16 39 H 0.28 7.31 8.31 -40.82 -0.34 6.97 16 40 H 0.12 2.06 8.06 -52.49 -0.42 1.63 16 41 H 0.11 1.50 8.06 -52.49 -0.42 1.08 16 LS Contribution 345.09 15.07 5.20 5.20 Total: -1.00 -29.42 345.09 -7.76 -37.19 By element: Atomic # 1 Polarization: 11.62 SS G_CDS: -5.83 Total: 5.79 kcal Atomic # 6 Polarization: -15.00 SS G_CDS: -2.78 Total: -17.78 kcal Atomic # 7 Polarization: -33.32 SS G_CDS: 0.43 Total: -32.89 kcal Atomic # 8 Polarization: -13.79 SS G_CDS: 0.07 Total: -13.71 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -4.86 Total: 16.20 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -29.42 -7.76 -37.19 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179140890.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.422 kcal (2) G-P(sol) polarization free energy of solvation -29.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds