Wall clock time and date at job start Tue Mar 31 2020 07:04:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 115.55915 * 2 1 4 4 C 1.53076 * 117.51366 * 214.30575 * 2 1 3 5 5 C 1.53001 * 117.50282 * 145.69621 * 2 1 3 6 6 H 1.09002 * 117.49780 * 214.99991 * 5 2 1 7 7 C 1.50696 * 117.49617 * 359.97438 * 5 2 1 8 8 O 1.21284 * 120.00080 * 359.91344 * 7 5 2 9 9 N 1.34772 * 119.99886 * 179.91568 * 7 5 2 10 10 C 1.46508 * 120.00227 * 180.02562 * 9 7 5 11 11 C 1.50700 * 109.47297 * 180.02562 * 10 9 7 12 12 C 1.38301 * 119.93103 * 90.00004 * 11 10 9 13 13 C 1.38096 * 120.06406 * 180.02562 * 12 11 10 14 14 C 1.38881 * 119.93523 * 359.97438 * 13 12 11 15 15 O 1.35754 * 120.06804 * 179.97438 * 14 13 12 16 16 C 1.34824 * 117.00276 * 5.53620 * 15 14 13 17 17 H 1.08005 * 119.99819 * 354.94472 * 16 15 14 18 18 C 1.38651 * 120.00108 * 174.94196 * 16 15 14 19 19 N 1.31558 * 120.00097 * 180.02562 * 18 16 15 20 20 Si 1.86801 * 119.99996 * 359.72385 * 18 16 15 21 21 H 1.48502 * 109.46987 * 89.99932 * 20 18 16 22 22 H 1.48492 * 109.47313 * 210.00058 * 20 18 16 23 23 H 1.48494 * 109.47070 * 330.00254 * 20 18 16 24 24 C 1.38877 * 119.86094 * 0.26449 * 14 13 12 25 25 C 1.38106 * 119.92818 * 359.48434 * 24 14 13 26 26 H 1.08998 * 109.46790 * 274.30628 * 1 2 3 27 27 H 1.08994 * 109.47092 * 34.30394 * 1 2 3 28 28 H 1.08996 * 109.46699 * 154.31062 * 1 2 3 29 29 H 1.09000 * 109.47427 * 205.69060 * 3 2 1 30 30 H 1.08995 * 109.47459 * 325.69400 * 3 2 1 31 31 H 1.09001 * 109.46810 * 85.69226 * 3 2 1 32 32 H 1.09001 * 117.49542 * 145.03645 * 4 2 1 33 33 H 1.09006 * 117.53308 * 359.97438 * 4 2 1 34 34 H 0.97002 * 120.00431 * 0.02562 * 9 7 5 35 35 H 1.08998 * 109.47015 * 59.99306 * 10 9 7 36 36 H 1.09005 * 109.46747 * 299.99823 * 10 9 7 37 37 H 1.07992 * 119.96684 * 359.97438 * 12 11 10 38 38 H 1.08008 * 120.03430 * 180.02562 * 13 12 11 39 39 H 0.97002 * 119.99765 * 179.97438 * 19 18 16 40 40 H 1.07992 * 120.03738 * 179.72344 * 24 14 13 41 41 H 1.07996 * 119.96435 * 180.23834 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1901 1.3803 0.0000 4 6 2.2372 -1.1215 -0.7652 5 6 2.2366 -1.1210 0.7648 6 1 3.1715 -0.8751 1.2684 7 6 1.3722 -2.1404 1.4610 8 8 0.1640 -2.0519 1.4031 9 7 1.9418 -3.1504 2.1480 10 6 1.1015 -4.1418 2.8244 11 6 1.9772 -5.1557 3.5144 12 6 2.3792 -4.9450 4.8208 13 6 3.1822 -5.8720 5.4556 14 6 3.5855 -7.0170 4.7810 15 8 4.3753 -7.9299 5.4022 16 6 4.6386 -7.7236 6.7083 17 1 4.2951 -6.8213 7.1924 18 6 5.3501 -8.6698 7.4300 19 7 5.6066 -8.4687 8.7045 20 14 5.9374 -10.2339 6.5945 21 1 7.2910 -10.0128 6.0252 22 1 5.9925 -11.3355 7.5888 23 1 4.9956 -10.5969 5.5053 24 6 3.1842 -7.2232 3.4675 25 6 2.3770 -6.2949 2.8399 26 1 -0.3633 0.0772 1.0248 27 1 -0.3633 0.8489 -0.5791 28 1 -0.3632 -0.9261 -0.4455 29 1 3.1823 1.3086 -0.4455 30 1 1.5811 2.0743 -0.5792 31 1 2.2772 1.7413 1.0248 32 1 3.1724 -0.8755 -1.2681 33 1 1.6127 -1.8597 -1.2684 34 1 2.9081 -3.2209 2.1947 35 1 0.4710 -4.6446 2.0911 36 1 0.4733 -3.6427 3.5623 37 1 2.0656 -4.0543 5.3448 38 1 3.4955 -5.7073 6.4760 39 1 6.1041 -9.1309 9.2094 40 1 3.4999 -8.1103 2.9388 41 1 2.0614 -6.4565 1.8198 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000179140890.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:04:28 Heat of formation + Delta-G solvation = -39.973017 kcal Electronic energy + Delta-G solvation = -21712.533323 eV Core-core repulsion = 18364.955480 eV Total energy + Delta-G solvation = -3347.577842 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.30127 -40.85967 -38.88189 -37.99692 -35.62214 -34.45523 -31.94511 -31.73588 -30.23523 -28.31239 -27.88193 -26.48559 -24.35998 -23.73381 -22.08891 -21.41166 -20.09317 -19.82902 -19.13828 -18.12857 -16.97812 -16.77613 -16.25372 -16.17245 -15.75942 -15.58423 -15.44009 -15.08650 -14.82682 -14.56391 -14.37731 -14.30799 -14.10282 -14.00455 -13.45296 -13.35420 -13.13211 -12.86718 -12.66996 -12.58867 -12.48589 -12.33857 -12.09712 -11.94923 -11.32111 -11.13896 -10.95916 -10.85506 -10.45127 -10.04213 -9.85638 -9.10857 -8.51926 -6.25198 0.46938 0.52288 1.31926 1.35567 1.51432 1.54593 2.24826 2.26664 2.76665 2.83868 3.00730 3.15726 3.68752 3.76653 3.85361 3.89196 3.98910 4.11755 4.20636 4.23294 4.41280 4.52042 4.67086 4.74411 4.79601 4.84378 4.86997 4.93280 5.02099 5.10203 5.11714 5.13607 5.19813 5.31580 5.32361 5.45078 5.51867 5.58162 5.68571 5.76859 5.86467 6.17084 6.61306 6.82072 7.29318 7.54679 8.59338 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.036593 B = 0.002579 C = 0.002565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 764.992800 B =10853.861147 C =10912.336421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.103 4.103 3 C -0.113 4.113 4 C -0.134 4.134 5 C -0.196 4.196 6 H 0.141 0.859 7 C 0.536 3.464 8 O -0.575 6.575 9 N -0.714 5.714 10 C 0.183 3.817 11 C -0.174 4.174 12 C -0.051 4.051 13 C -0.238 4.238 14 C 0.129 3.871 15 O -0.241 6.241 16 C -0.400 4.400 17 H 0.083 0.917 18 C 0.010 3.990 19 N -0.922 5.922 20 Si 0.971 3.029 21 H -0.265 1.265 22 H -0.269 1.269 23 H -0.262 1.262 24 C -0.191 4.191 25 C -0.045 4.045 26 H 0.045 0.955 27 H 0.063 0.937 28 H 0.046 0.954 29 H 0.073 0.927 30 H 0.071 0.929 31 H 0.060 0.940 32 H 0.128 0.872 33 H 0.090 0.910 34 H 0.411 0.589 35 H 0.075 0.925 36 H 0.065 0.935 37 H 0.133 0.867 38 H 0.110 0.890 39 H 0.285 0.715 40 H 0.132 0.868 41 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.370 14.793 -19.249 24.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.103 4.103 3 C -0.170 4.170 4 C -0.171 4.171 5 C -0.217 4.217 6 H 0.159 0.841 7 C 0.324 3.676 8 O -0.455 6.455 9 N -0.365 5.365 10 C 0.060 3.940 11 C -0.175 4.175 12 C -0.069 4.069 13 C -0.257 4.257 14 C 0.079 3.921 15 O -0.148 6.148 16 C -0.476 4.476 17 H 0.100 0.900 18 C -0.188 4.188 19 N -0.562 5.562 20 Si 0.793 3.207 21 H -0.189 1.189 22 H -0.194 1.194 23 H -0.186 1.186 24 C -0.210 4.210 25 C -0.064 4.064 26 H 0.064 0.936 27 H 0.082 0.918 28 H 0.065 0.935 29 H 0.092 0.908 30 H 0.090 0.910 31 H 0.079 0.921 32 H 0.146 0.854 33 H 0.108 0.892 34 H 0.247 0.753 35 H 0.093 0.907 36 H 0.084 0.916 37 H 0.150 0.850 38 H 0.127 0.873 39 H 0.095 0.905 40 H 0.150 0.850 41 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -6.042 14.562 -19.155 24.809 hybrid contribution 0.786 -0.827 0.934 1.475 sum -5.256 13.735 -18.221 23.415 Atomic orbital electron populations 1.21258 0.92043 1.01008 1.01252 1.21709 0.95152 0.91774 1.01707 1.21404 1.00653 0.92501 1.02472 1.23302 1.03451 1.00536 0.89861 1.22438 1.02313 1.00384 0.96582 0.84135 1.20182 0.88004 0.81432 0.78017 1.90686 1.16140 1.75797 1.62859 1.46152 1.11141 1.26826 1.52385 1.19878 0.91207 0.87469 0.95402 1.19545 1.05216 0.97970 0.94755 1.20907 0.94280 0.97468 0.94289 1.21266 1.06047 0.96858 1.01517 1.19736 0.89978 0.89089 0.93252 1.83519 1.60488 1.46344 1.24482 1.20712 1.36732 1.07573 0.82632 0.89988 1.25296 0.96299 1.01898 0.95339 1.69730 1.40366 1.38014 1.08100 0.85211 0.79327 0.77659 0.78511 1.18950 1.19416 1.18571 1.20515 1.04885 1.03136 0.92475 1.20939 0.94002 0.91683 0.99728 0.93576 0.91834 0.93523 0.90770 0.90970 0.92116 0.85433 0.89169 0.75340 0.90725 0.91648 0.84962 0.87255 0.90521 0.85041 0.82916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.93 8.09 71.98 0.58 -1.35 16 2 C -0.10 -1.61 2.70 -52.15 -0.14 -1.75 16 3 C -0.11 -1.24 9.85 71.98 0.71 -0.53 16 4 C -0.13 -1.82 9.53 30.62 0.29 -1.53 16 5 C -0.20 -3.23 5.91 -11.54 -0.07 -3.30 16 6 H 0.14 1.76 8.14 -2.39 -0.02 1.74 16 7 C 0.54 12.23 7.59 87.66 0.67 12.89 16 8 O -0.57 -16.98 13.10 -3.04 -0.04 -17.02 16 9 N -0.71 -14.94 5.55 -466.77 -2.59 -17.53 16 10 C 0.18 4.32 5.80 85.63 0.50 4.82 16 11 C -0.17 -4.77 5.25 -19.83 -0.10 -4.87 16 12 C -0.05 -1.64 9.69 22.25 0.22 -1.42 16 13 C -0.24 -9.88 9.17 22.39 0.21 -9.67 16 14 C 0.13 5.72 6.65 22.58 0.15 5.87 16 15 O -0.24 -12.64 8.59 -22.72 -0.20 -12.84 16 16 C -0.40 -23.01 9.95 67.92 0.68 -22.33 16 17 H 0.08 4.94 5.44 -2.91 -0.02 4.92 16 18 C 0.01 0.59 5.49 84.83 0.47 1.06 16 19 N -0.92 -54.25 13.96 21.61 0.30 -53.95 16 20 Si 0.97 44.39 28.62 68.60 1.96 46.35 16 21 H -0.26 -11.59 7.11 99.48 0.71 -10.89 16 22 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 23 H -0.26 -11.88 7.11 99.48 0.71 -11.17 16 24 C -0.19 -6.73 9.99 22.39 0.22 -6.51 16 25 C -0.05 -1.25 9.69 22.25 0.22 -1.04 16 26 H 0.05 1.09 7.25 -2.39 -0.02 1.07 16 27 H 0.06 0.99 7.92 -2.39 -0.02 0.97 16 28 H 0.05 1.06 7.02 -2.39 -0.02 1.04 16 29 H 0.07 0.59 7.90 -2.39 -0.02 0.58 16 30 H 0.07 0.69 7.92 -2.39 -0.02 0.67 16 31 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.13 1.11 8.05 -2.39 -0.02 1.09 16 33 H 0.09 1.40 8.05 -2.38 -0.02 1.38 16 34 H 0.41 7.32 8.46 -92.71 -0.78 6.54 16 35 H 0.07 1.73 8.08 -2.39 -0.02 1.71 16 36 H 0.07 1.63 8.08 -2.38 -0.02 1.61 16 37 H 0.13 3.69 8.06 -2.91 -0.02 3.66 16 38 H 0.11 5.07 5.64 -2.91 -0.02 5.05 16 39 H 0.29 15.39 8.31 -92.71 -0.77 14.62 16 40 H 0.13 4.27 8.06 -2.91 -0.02 4.25 16 41 H 0.15 3.18 8.06 -2.91 -0.02 3.15 16 Total: -1.00 -67.15 345.09 4.28 -62.87 By element: Atomic # 1 Polarization: 21.52 SS G_CDS: 0.26 Total: 21.78 kcal Atomic # 6 Polarization: -34.25 SS G_CDS: 4.58 Total: -29.66 kcal Atomic # 7 Polarization: -69.18 SS G_CDS: -2.29 Total: -71.47 kcal Atomic # 8 Polarization: -29.63 SS G_CDS: -0.23 Total: -29.86 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 1.96 Total: 46.35 kcal Total: -67.15 4.28 -62.87 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179140890.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.896 kcal (2) G-P(sol) polarization free energy of solvation -67.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds