Wall clock time and date at job start Tue Mar 31 2020 07:00:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42895 * 109.49901 * 2 1 4 4 C 1.53042 * 109.49646 * 239.93364 * 2 1 3 5 5 C 1.53039 * 109.53483 * 178.64807 * 4 2 1 6 6 C 1.53191 * 109.31336 * 61.37125 * 5 4 2 7 7 N 1.46925 * 108.77297 * 305.36170 * 6 5 4 8 8 C 1.34774 * 120.63077 * 233.58358 * 7 6 5 9 9 O 1.21548 * 120.00161 * 174.24254 * 8 7 6 10 10 C 1.47890 * 119.99772 * 354.24477 * 8 7 6 11 11 C 1.39919 * 120.02733 * 323.37785 * 10 8 7 12 12 C 1.38323 * 120.36321 * 179.97438 * 11 10 8 13 13 C 1.37759 * 120.40941 * 359.71153 * 12 11 10 14 14 C 1.40751 * 120.03530 * 0.57056 * 13 12 11 15 15 C 1.41438 * 120.17375 * 179.70978 * 14 13 12 16 16 H 1.08002 * 119.99774 * 28.72765 * 15 14 13 17 17 C 1.39938 * 120.00057 * 208.99492 * 15 14 13 18 18 N 1.30821 * 119.99995 * 10.63154 * 17 15 14 19 19 Si 1.86804 * 120.00079 * 190.62792 * 17 15 14 20 20 H 1.48503 * 109.47035 * 60.00136 * 19 17 15 21 21 H 1.48497 * 109.46962 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.47185 * 300.00469 * 19 17 15 23 23 C 1.38996 * 120.02425 * 143.35940 * 10 8 7 24 24 C 1.46924 * 118.73985 * 53.85944 * 7 6 5 25 25 H 1.09001 * 109.47070 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.46974 * 300.06493 * 1 2 3 27 27 H 1.09000 * 109.47116 * 60.06262 * 1 2 3 28 28 H 0.96702 * 114.00167 * 59.93284 * 3 2 1 29 29 H 1.09005 * 109.45698 * 58.63177 * 4 2 1 30 30 H 1.08993 * 109.46071 * 298.67202 * 4 2 1 31 31 H 1.08997 * 109.50054 * 301.41381 * 5 4 2 32 32 H 1.09012 * 109.52046 * 181.33585 * 5 4 2 33 33 H 1.08993 * 109.58790 * 185.57213 * 6 5 4 34 34 H 1.09001 * 109.70442 * 65.21307 * 6 5 4 35 35 H 1.08006 * 119.81483 * 359.95716 * 11 10 8 36 36 H 1.07997 * 119.79493 * 179.97438 * 12 11 10 37 37 H 1.07999 * 119.98031 * 180.30391 * 13 12 11 38 38 H 0.96998 * 119.99986 * 179.97438 * 18 17 15 39 39 H 1.08004 * 120.20420 * 0.04477 * 23 10 8 40 40 H 1.09005 * 109.58922 * 65.92885 * 24 7 6 41 41 H 1.08999 * 109.58890 * 186.35387 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0069 1.3470 0.0000 4 6 2.0407 -0.7228 -1.2485 5 6 3.5707 -0.6939 -1.2666 6 6 4.1059 -1.4255 -0.0316 7 7 3.5053 -0.8283 1.1689 8 6 4.2818 -0.3854 2.1775 9 8 3.7815 0.2005 3.1175 10 6 5.7427 -0.6123 2.1403 11 6 6.2531 -1.8037 1.6132 12 6 7.6183 -2.0229 1.5745 13 6 8.4915 -1.0688 2.0489 14 6 7.9964 0.1333 2.5883 15 6 8.8900 1.1123 3.0818 16 1 9.8832 1.1955 2.6659 17 6 8.4891 1.9693 4.1129 18 7 7.3768 1.7372 4.7612 19 14 9.5424 3.4447 4.5638 20 1 9.6731 4.3383 3.3849 21 1 8.9030 4.1869 5.6797 22 1 10.8889 2.9814 4.9853 23 6 6.6099 0.3580 2.6287 24 6 2.0417 -0.7288 1.2518 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5149 0.8894 27 1 -0.3633 0.5129 -0.8905 28 1 1.7210 1.8655 0.7645 29 1 1.6576 -0.2242 -2.1390 30 1 1.6971 -1.7570 -1.2355 31 1 3.9153 0.3401 -1.2547 32 1 3.9338 -1.1880 -2.1679 33 1 5.1901 -1.3229 0.0126 34 1 3.8406 -2.4813 -0.0863 35 1 5.5773 -2.5563 1.2346 36 1 8.0022 -2.9460 1.1660 37 1 9.5563 -1.2451 2.0109 38 1 7.0991 2.3310 5.4761 39 1 6.2204 1.2790 3.0369 40 1 1.6095 -1.7284 1.2983 41 1 1.7636 -0.1664 2.1431 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000179842678.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:00:33 Heat of formation + Delta-G solvation = -67.589524 kcal Electronic energy + Delta-G solvation = -23528.377178 eV Core-core repulsion = 20179.601794 eV Total energy + Delta-G solvation = -3348.775384 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.12461 -38.20797 -36.86734 -35.32850 -33.68515 -32.38727 -31.38687 -30.13178 -29.45054 -26.94211 -25.49105 -25.24556 -22.34828 -21.93131 -20.93460 -20.09320 -18.80734 -17.48562 -16.59790 -16.00306 -15.66297 -15.07513 -14.86977 -14.83215 -14.68828 -14.23888 -13.66203 -13.50372 -13.03408 -12.92368 -12.74374 -12.51298 -12.42876 -12.21499 -12.06671 -11.71899 -11.56770 -11.25159 -11.11371 -10.93504 -10.76979 -10.69198 -10.39181 -10.32729 -10.04586 -10.03366 -9.67921 -9.22993 -8.90373 -8.17495 -7.57739 -7.43168 -6.71088 -4.41320 2.31929 2.82901 3.09044 3.11061 3.15844 3.41371 3.76036 3.94735 4.24656 4.59700 4.63221 4.77641 4.83957 5.12888 5.28984 5.32908 5.50082 5.52871 5.59482 5.60091 5.68359 5.79504 5.83520 5.92209 5.99747 6.08553 6.15003 6.21896 6.32878 6.48373 6.70142 6.91624 7.00880 7.06397 7.23990 7.40498 7.68030 7.73565 7.79419 7.89972 8.03224 8.18796 8.52034 8.83431 8.84678 8.91755 10.22573 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.021114 B = 0.004685 C = 0.004200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1325.784697 B = 5974.549195 C = 6664.620466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.115 3.885 3 O -0.550 6.550 4 C -0.103 4.103 5 C -0.133 4.133 6 C 0.096 3.904 7 N -0.608 5.608 8 C 0.570 3.430 9 O -0.545 6.545 10 C -0.122 4.122 11 C -0.219 4.219 12 C -0.100 4.100 13 C -0.209 4.209 14 C 0.102 3.898 15 C -0.463 4.463 16 H 0.079 0.921 17 C 0.071 3.929 18 N -0.791 5.791 19 Si 0.912 3.088 20 H -0.264 1.264 21 H -0.278 1.278 22 H -0.265 1.265 23 C -0.092 4.092 24 C 0.088 3.912 25 H 0.065 0.935 26 H 0.060 0.940 27 H 0.064 0.936 28 H 0.376 0.624 29 H 0.067 0.933 30 H 0.072 0.928 31 H 0.077 0.923 32 H 0.070 0.930 33 H 0.116 0.884 34 H 0.058 0.942 35 H 0.098 0.902 36 H 0.094 0.906 37 H 0.096 0.904 38 H 0.284 0.716 39 H 0.130 0.870 40 H 0.067 0.933 41 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.158 -4.093 -9.419 14.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.073 3.927 3 O -0.355 6.355 4 C -0.140 4.140 5 C -0.171 4.171 6 C -0.027 4.027 7 N -0.341 5.341 8 C 0.362 3.638 9 O -0.423 6.423 10 C -0.126 4.126 11 C -0.239 4.239 12 C -0.119 4.119 13 C -0.229 4.229 14 C 0.100 3.900 15 C -0.493 4.493 16 H 0.098 0.902 17 C -0.147 4.147 18 N -0.416 5.416 19 Si 0.737 3.263 20 H -0.188 1.188 21 H -0.203 1.203 22 H -0.190 1.190 23 C -0.112 4.112 24 C -0.036 4.036 25 H 0.084 0.916 26 H 0.079 0.921 27 H 0.084 0.916 28 H 0.223 0.777 29 H 0.086 0.914 30 H 0.091 0.909 31 H 0.096 0.904 32 H 0.089 0.911 33 H 0.133 0.867 34 H 0.076 0.924 35 H 0.116 0.884 36 H 0.112 0.888 37 H 0.114 0.886 38 H 0.095 0.905 39 H 0.147 0.853 40 H 0.085 0.915 41 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -10.291 -3.879 -9.247 14.368 hybrid contribution 0.033 0.662 0.832 1.064 sum -10.257 -3.218 -8.414 13.652 Atomic orbital electron populations 1.22436 0.95587 1.02677 1.02675 1.21627 0.92028 0.83424 0.95573 1.86540 1.77360 1.22437 1.49211 1.21500 0.96761 0.99412 0.96353 1.21885 0.94884 1.02567 0.97811 1.22240 1.01446 0.95497 0.83523 1.47808 1.05168 1.62402 1.18735 1.18948 0.87500 0.76435 0.80922 1.90686 1.75414 1.41479 1.34737 1.19430 0.90399 0.97672 1.05068 1.20525 0.94880 0.98102 1.10381 1.20456 0.93178 0.97785 1.00440 1.21147 0.97715 0.94892 1.09114 1.17582 0.91965 0.91133 0.89366 1.19542 1.00305 1.13460 1.15976 0.90246 1.25943 0.95282 0.98209 0.95258 1.69768 1.20387 1.34669 1.16781 0.86300 0.80386 0.80880 0.78761 1.18828 1.20277 1.19012 1.21561 0.92732 0.98629 0.98307 1.22255 0.81698 1.00652 0.98960 0.91577 0.92111 0.91647 0.77662 0.91408 0.90918 0.90440 0.91100 0.86653 0.92387 0.88385 0.88834 0.88604 0.90505 0.85275 0.91497 0.89013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.61 8.82 37.16 0.33 -1.28 16 2 C 0.12 1.39 1.01 -90.28 -0.09 1.30 16 3 O -0.55 -7.84 12.18 -35.23 -0.43 -8.27 16 4 C -0.10 -1.14 4.92 -26.69 -0.13 -1.28 16 5 C -0.13 -1.71 5.94 -26.61 -0.16 -1.87 16 6 C 0.10 1.41 4.79 -3.71 -0.02 1.39 16 7 N -0.61 -10.59 2.91 -173.60 -0.50 -11.10 16 8 C 0.57 12.80 7.36 -12.31 -0.09 12.71 16 9 O -0.55 -13.89 16.27 5.32 0.09 -13.80 16 10 C -0.12 -2.92 5.24 -105.04 -0.55 -3.47 16 11 C -0.22 -4.63 7.36 -38.92 -0.29 -4.91 16 12 C -0.10 -2.13 10.01 -39.73 -0.40 -2.52 16 13 C -0.21 -4.95 9.78 -38.81 -0.38 -5.33 16 14 C 0.10 2.70 5.54 -106.87 -0.59 2.11 16 15 C -0.46 -12.25 9.06 -37.73 -0.34 -12.59 16 16 H 0.08 1.98 7.87 -52.49 -0.41 1.57 16 17 C 0.07 1.82 5.25 -17.35 -0.09 1.73 16 18 N -0.79 -21.37 10.87 55.55 0.60 -20.76 16 19 Si 0.91 19.00 29.57 -169.99 -5.03 13.97 16 20 H -0.26 -5.41 7.11 56.52 0.40 -5.01 16 21 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 22 H -0.27 -5.41 7.11 56.52 0.40 -5.00 16 23 C -0.09 -2.47 8.22 -38.44 -0.32 -2.79 16 24 C 0.09 1.26 5.41 -3.49 -0.02 1.24 16 25 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 27 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 28 H 0.38 4.58 9.05 45.56 0.41 5.00 16 29 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.08 1.19 7.61 -51.93 -0.40 0.80 16 32 H 0.07 0.75 8.14 -51.92 -0.42 0.33 16 33 H 0.12 1.92 4.53 -51.93 -0.24 1.69 16 34 H 0.06 0.73 8.06 -51.93 -0.42 0.32 16 35 H 0.10 1.79 6.16 -52.48 -0.32 1.46 16 36 H 0.09 1.67 8.06 -52.49 -0.42 1.25 16 37 H 0.10 2.11 8.06 -52.49 -0.42 1.69 16 38 H 0.28 7.09 8.30 -40.82 -0.34 6.75 16 39 H 0.13 3.75 6.21 -52.48 -0.33 3.42 16 40 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.09 1.44 7.00 -51.93 -0.36 1.08 16 LS Contribution 329.72 15.07 4.97 4.97 Total: -1.00 -30.76 329.72 -8.44 -39.20 By element: Atomic # 1 Polarization: 16.36 SS G_CDS: -5.00 Total: 11.36 kcal Atomic # 6 Polarization: -12.43 SS G_CDS: -3.14 Total: -15.56 kcal Atomic # 7 Polarization: -31.96 SS G_CDS: 0.10 Total: -31.86 kcal Atomic # 8 Polarization: -21.73 SS G_CDS: -0.34 Total: -22.07 kcal Atomic # 14 Polarization: 19.00 SS G_CDS: -5.03 Total: 13.97 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -30.76 -8.44 -39.20 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179842678.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.390 kcal (2) G-P(sol) polarization free energy of solvation -30.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds