Wall clock time and date at job start Tue Mar 31 2020 07:00:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42895 * 109.49901 * 2 1 4 4 C 1.53042 * 109.49646 * 239.93364 * 2 1 3 5 5 C 1.53039 * 109.53483 * 178.64807 * 4 2 1 6 6 C 1.53191 * 109.31336 * 61.37125 * 5 4 2 7 7 N 1.46925 * 108.77297 * 305.36170 * 6 5 4 8 8 C 1.34774 * 120.63077 * 233.58358 * 7 6 5 9 9 O 1.21548 * 120.00161 * 174.24254 * 8 7 6 10 10 C 1.47890 * 119.99772 * 354.24477 * 8 7 6 11 11 C 1.39919 * 120.02733 * 323.37785 * 10 8 7 12 12 C 1.38323 * 120.36321 * 179.97438 * 11 10 8 13 13 C 1.37759 * 120.40941 * 359.71153 * 12 11 10 14 14 C 1.40751 * 120.03530 * 0.57056 * 13 12 11 15 15 C 1.41438 * 120.17375 * 179.70978 * 14 13 12 16 16 H 1.08002 * 119.99774 * 28.72765 * 15 14 13 17 17 C 1.39938 * 120.00057 * 208.99492 * 15 14 13 18 18 N 1.30821 * 119.99995 * 10.63154 * 17 15 14 19 19 Si 1.86804 * 120.00079 * 190.62792 * 17 15 14 20 20 H 1.48503 * 109.47035 * 60.00136 * 19 17 15 21 21 H 1.48497 * 109.46962 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.47185 * 300.00469 * 19 17 15 23 23 C 1.38996 * 120.02425 * 143.35940 * 10 8 7 24 24 C 1.46924 * 118.73985 * 53.85944 * 7 6 5 25 25 H 1.09001 * 109.47070 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.46974 * 300.06493 * 1 2 3 27 27 H 1.09000 * 109.47116 * 60.06262 * 1 2 3 28 28 H 0.96702 * 114.00167 * 59.93284 * 3 2 1 29 29 H 1.09005 * 109.45698 * 58.63177 * 4 2 1 30 30 H 1.08993 * 109.46071 * 298.67202 * 4 2 1 31 31 H 1.08997 * 109.50054 * 301.41381 * 5 4 2 32 32 H 1.09012 * 109.52046 * 181.33585 * 5 4 2 33 33 H 1.08993 * 109.58790 * 185.57213 * 6 5 4 34 34 H 1.09001 * 109.70442 * 65.21307 * 6 5 4 35 35 H 1.08006 * 119.81483 * 359.95716 * 11 10 8 36 36 H 1.07997 * 119.79493 * 179.97438 * 12 11 10 37 37 H 1.07999 * 119.98031 * 180.30391 * 13 12 11 38 38 H 0.96998 * 119.99986 * 179.97438 * 18 17 15 39 39 H 1.08004 * 120.20420 * 0.04477 * 23 10 8 40 40 H 1.09005 * 109.58922 * 65.92885 * 24 7 6 41 41 H 1.08999 * 109.58890 * 186.35387 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0069 1.3470 0.0000 4 6 2.0407 -0.7228 -1.2485 5 6 3.5707 -0.6939 -1.2666 6 6 4.1059 -1.4255 -0.0316 7 7 3.5053 -0.8283 1.1689 8 6 4.2818 -0.3854 2.1775 9 8 3.7815 0.2005 3.1175 10 6 5.7427 -0.6123 2.1403 11 6 6.2531 -1.8037 1.6132 12 6 7.6183 -2.0229 1.5745 13 6 8.4915 -1.0688 2.0489 14 6 7.9964 0.1333 2.5883 15 6 8.8900 1.1123 3.0818 16 1 9.8832 1.1955 2.6659 17 6 8.4891 1.9693 4.1129 18 7 7.3768 1.7372 4.7612 19 14 9.5424 3.4447 4.5638 20 1 9.6731 4.3383 3.3849 21 1 8.9030 4.1869 5.6797 22 1 10.8889 2.9814 4.9853 23 6 6.6099 0.3580 2.6287 24 6 2.0417 -0.7288 1.2518 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5149 0.8894 27 1 -0.3633 0.5129 -0.8905 28 1 1.7210 1.8655 0.7645 29 1 1.6576 -0.2242 -2.1390 30 1 1.6971 -1.7570 -1.2355 31 1 3.9153 0.3401 -1.2547 32 1 3.9338 -1.1880 -2.1679 33 1 5.1901 -1.3229 0.0126 34 1 3.8406 -2.4813 -0.0863 35 1 5.5773 -2.5563 1.2346 36 1 8.0022 -2.9460 1.1660 37 1 9.5563 -1.2451 2.0109 38 1 7.0991 2.3310 5.4761 39 1 6.2204 1.2790 3.0369 40 1 1.6095 -1.7284 1.2983 41 1 1.7636 -0.1664 2.1431 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000179842678.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:00:32 Heat of formation + Delta-G solvation = -88.231280 kcal Electronic energy + Delta-G solvation = -23529.272272 eV Core-core repulsion = 20179.601794 eV Total energy + Delta-G solvation = -3349.670477 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -41.53269 -39.63683 -38.62506 -36.64978 -35.52857 -33.60974 -32.54319 -31.79129 -31.30175 -28.07266 -27.05137 -26.78665 -23.69636 -23.36573 -22.71633 -21.25053 -20.34714 -19.23151 -17.79416 -17.65620 -17.35421 -16.57029 -16.50017 -16.11033 -15.92023 -15.46182 -15.17837 -15.00111 -14.51000 -14.48132 -14.10113 -13.96143 -13.68035 -13.53997 -13.18016 -13.08114 -12.83366 -12.80130 -12.60630 -12.50536 -12.27959 -11.98121 -11.92617 -11.79442 -11.48707 -11.37201 -11.14183 -11.08976 -10.60570 -9.62784 -9.34759 -9.31551 -8.60136 -6.40729 0.47951 1.00416 1.35518 1.47340 1.49139 1.89386 2.12835 2.19789 2.76280 3.30923 3.56517 3.64622 3.80714 3.88050 3.95719 4.11754 4.29175 4.43330 4.48811 4.58168 4.60140 4.67274 4.75920 4.80290 4.88388 4.89540 4.97592 5.08244 5.10752 5.19789 5.21752 5.24988 5.31688 5.44999 5.51781 5.64385 5.84592 5.94673 6.04186 6.28007 6.39073 6.61251 6.74877 6.88906 6.94568 7.23793 8.35120 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.021114 B = 0.004685 C = 0.004200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1325.784697 B = 5974.549195 C = 6664.620466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.112 3.888 3 O -0.574 6.574 4 C -0.101 4.101 5 C -0.129 4.129 6 C 0.088 3.912 7 N -0.596 5.596 8 C 0.560 3.440 9 O -0.592 6.592 10 C -0.133 4.133 11 C -0.195 4.195 12 C -0.096 4.096 13 C -0.213 4.213 14 C 0.070 3.930 15 C -0.501 4.501 16 H 0.084 0.916 17 C 0.026 3.974 18 N -0.837 5.837 19 Si 0.985 3.015 20 H -0.259 1.259 21 H -0.274 1.274 22 H -0.253 1.253 23 C -0.129 4.129 24 C 0.081 3.919 25 H 0.087 0.913 26 H 0.059 0.941 27 H 0.071 0.929 28 H 0.379 0.621 29 H 0.078 0.922 30 H 0.104 0.896 31 H 0.041 0.959 32 H 0.101 0.899 33 H 0.094 0.906 34 H 0.097 0.903 35 H 0.138 0.862 36 H 0.141 0.859 37 H 0.110 0.890 38 H 0.284 0.716 39 H 0.091 0.909 40 H 0.099 0.901 41 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.991 -6.574 -11.761 17.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.071 3.929 3 O -0.381 6.381 4 C -0.139 4.139 5 C -0.167 4.167 6 C -0.034 4.034 7 N -0.327 5.327 8 C 0.351 3.649 9 O -0.474 6.474 10 C -0.137 4.137 11 C -0.214 4.214 12 C -0.114 4.114 13 C -0.233 4.233 14 C 0.068 3.932 15 C -0.531 4.531 16 H 0.102 0.898 17 C -0.188 4.188 18 N -0.463 5.463 19 Si 0.806 3.194 20 H -0.183 1.183 21 H -0.198 1.198 22 H -0.177 1.177 23 C -0.150 4.150 24 C -0.041 4.041 25 H 0.106 0.894 26 H 0.078 0.922 27 H 0.090 0.910 28 H 0.227 0.773 29 H 0.096 0.904 30 H 0.122 0.878 31 H 0.060 0.940 32 H 0.119 0.881 33 H 0.112 0.888 34 H 0.115 0.885 35 H 0.156 0.844 36 H 0.159 0.841 37 H 0.128 0.872 38 H 0.094 0.906 39 H 0.109 0.891 40 H 0.117 0.883 41 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -11.140 -6.399 -11.652 17.344 hybrid contribution 0.189 1.247 1.404 1.887 sum -10.951 -5.152 -10.248 15.858 Atomic orbital electron populations 1.22358 0.92892 1.04220 1.03048 1.21850 0.94024 0.82104 0.94922 1.86523 1.78132 1.23840 1.49593 1.21590 0.95150 1.01146 0.95978 1.21839 0.96432 1.00475 0.97952 1.22473 1.00284 0.97651 0.82943 1.47855 1.06408 1.60495 1.17947 1.18884 0.87459 0.76797 0.81732 1.90652 1.75999 1.43790 1.37002 1.19739 0.91301 0.98089 1.04534 1.20974 0.95762 0.97189 1.07525 1.20940 0.92779 0.98677 0.99006 1.21450 0.99064 0.94449 1.08338 1.17927 0.92040 0.92713 0.90562 1.19852 1.00823 1.15170 1.17207 0.89773 1.26867 0.96366 1.00819 0.94711 1.69904 1.22557 1.36091 1.17755 0.85203 0.78795 0.76924 0.78497 1.18297 1.19849 1.17676 1.21342 0.93740 0.98702 1.01184 1.22578 0.79589 1.02472 0.99474 0.89389 0.92157 0.90953 0.77255 0.90365 0.87810 0.93989 0.88090 0.88753 0.88544 0.84439 0.84109 0.87206 0.90565 0.89062 0.88304 0.91299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.56 8.82 71.98 0.64 -1.92 16 2 C 0.11 2.46 1.01 -10.57 -0.01 2.45 16 3 O -0.57 -16.39 12.18 -148.98 -1.81 -18.20 16 4 C -0.10 -1.86 4.92 30.62 0.15 -1.71 16 5 C -0.13 -2.93 5.94 30.67 0.18 -2.75 16 6 C 0.09 2.32 4.79 86.36 0.41 2.73 16 7 N -0.60 -20.10 2.91 -821.44 -2.39 -22.49 16 8 C 0.56 25.85 7.36 86.80 0.64 26.49 16 9 O -0.59 -32.01 16.27 -3.87 -0.06 -32.07 16 10 C -0.13 -6.52 5.24 -20.13 -0.11 -6.62 16 11 C -0.20 -7.84 7.36 22.70 0.17 -7.68 16 12 C -0.10 -3.82 10.01 22.18 0.22 -3.60 16 13 C -0.21 -10.04 9.78 22.77 0.22 -9.82 16 14 C 0.07 3.86 5.54 -21.32 -0.12 3.74 16 15 C -0.50 -27.79 9.06 23.47 0.21 -27.57 16 16 H 0.08 4.37 7.87 -2.91 -0.02 4.35 16 17 C 0.03 1.38 5.25 85.26 0.45 1.82 16 18 N -0.84 -48.43 10.87 21.82 0.24 -48.20 16 19 Si 0.99 40.58 29.57 68.60 2.03 42.60 16 20 H -0.26 -10.31 7.11 99.48 0.71 -9.60 16 21 H -0.27 -10.93 7.11 99.48 0.71 -10.23 16 22 H -0.25 -9.79 7.11 99.48 0.71 -9.09 16 23 C -0.13 -7.36 8.22 23.01 0.19 -7.17 16 24 C 0.08 2.19 5.41 86.51 0.47 2.66 16 25 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 26 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 27 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 28 H 0.38 9.74 9.05 -74.06 -0.67 9.07 16 29 H 0.08 1.33 8.14 -2.38 -0.02 1.31 16 30 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 31 H 0.04 1.26 7.61 -2.39 -0.02 1.24 16 32 H 0.10 1.71 8.14 -2.38 -0.02 1.69 16 33 H 0.09 2.91 4.53 -2.39 -0.01 2.90 16 34 H 0.10 1.89 8.06 -2.39 -0.02 1.87 16 35 H 0.14 4.41 6.16 -2.91 -0.02 4.39 16 36 H 0.14 4.30 8.06 -2.91 -0.02 4.27 16 37 H 0.11 4.75 8.06 -2.91 -0.02 4.73 16 38 H 0.28 15.26 8.30 -92.71 -0.77 14.49 16 39 H 0.09 5.82 6.21 -2.91 -0.02 5.80 16 40 H 0.10 2.06 8.14 -2.38 -0.02 2.04 16 41 H 0.07 2.19 7.00 -2.39 -0.02 2.18 16 Total: -1.00 -73.79 329.72 2.09 -71.69 By element: Atomic # 1 Polarization: 35.23 SS G_CDS: 0.37 Total: 35.60 kcal Atomic # 6 Polarization: -32.66 SS G_CDS: 3.72 Total: -28.94 kcal Atomic # 7 Polarization: -68.54 SS G_CDS: -2.15 Total: -70.69 kcal Atomic # 8 Polarization: -48.39 SS G_CDS: -1.88 Total: -50.27 kcal Atomic # 14 Polarization: 40.58 SS G_CDS: 2.03 Total: 42.60 kcal Total: -73.79 2.09 -71.69 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179842678.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.538 kcal (2) G-P(sol) polarization free energy of solvation -73.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds