Wall clock time and date at job start Tue Mar 31 2020 07:00:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42901 * 109.51948 * 2 1 4 4 C 1.53038 * 109.50160 * 120.08012 * 2 1 3 5 5 C 1.53034 * 109.53942 * 181.32078 * 4 2 1 6 6 C 1.53194 * 109.31463 * 298.63248 * 5 4 2 7 7 N 1.46931 * 108.77060 * 54.63879 * 6 5 4 8 8 C 1.34773 * 120.63197 * 126.41712 * 7 6 5 9 9 O 1.21554 * 119.99810 * 354.19300 * 8 7 6 10 10 C 1.47883 * 120.00367 * 174.19352 * 8 7 6 11 11 C 1.39922 * 120.02443 * 324.57232 * 10 8 7 12 12 C 1.38329 * 120.35837 * 179.78562 * 11 10 8 13 13 C 1.37755 * 120.41162 * 0.46119 * 12 11 10 14 14 C 1.40744 * 120.03840 * 359.79268 * 13 12 11 15 15 C 1.41442 * 120.17995 * 179.97438 * 14 13 12 16 16 H 1.08001 * 119.99393 * 330.75038 * 15 14 13 17 17 C 1.39936 * 120.00330 * 150.74641 * 15 14 13 18 18 N 1.30823 * 119.99909 * 349.38769 * 17 15 14 19 19 Si 1.86798 * 119.99867 * 169.38114 * 17 15 14 20 20 H 1.48508 * 109.46942 * 60.00460 * 19 17 15 21 21 H 1.48507 * 109.46897 * 180.02562 * 19 17 15 22 22 H 1.48493 * 109.47372 * 300.00453 * 19 17 15 23 23 C 1.38998 * 120.02631 * 144.83773 * 10 8 7 24 24 C 1.46929 * 118.73609 * 306.38895 * 7 6 5 25 25 H 1.09004 * 109.46844 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47527 * 300.07342 * 1 2 3 27 27 H 1.08998 * 109.47272 * 60.08202 * 1 2 3 28 28 H 0.96698 * 114.00680 * 299.91865 * 3 2 1 29 29 H 1.09001 * 109.45881 * 301.34205 * 4 2 1 30 30 H 1.09001 * 109.45563 * 61.29703 * 4 2 1 31 31 H 1.09006 * 109.49955 * 178.68475 * 5 4 2 32 32 H 1.08999 * 109.50272 * 58.59125 * 5 4 2 33 33 H 1.08999 * 109.58715 * 294.85494 * 6 5 4 34 34 H 1.08995 * 109.70584 * 174.49212 * 6 5 4 35 35 H 1.07997 * 119.82007 * 359.97438 * 11 10 8 36 36 H 1.07994 * 119.79130 * 180.25637 * 12 11 10 37 37 H 1.07995 * 119.98052 * 179.76122 * 13 12 11 38 38 H 0.97004 * 120.00055 * 179.97438 * 18 17 15 39 39 H 1.07996 * 120.20321 * 0.02562 * 23 10 8 40 40 H 1.08996 * 109.58821 * 293.82131 * 24 7 6 41 41 H 1.09006 * 109.70063 * 173.46685 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0074 1.3469 0.0000 4 6 2.0408 -0.7230 1.2483 5 6 3.5708 -0.6948 1.2660 6 6 4.1054 -1.4265 0.0307 7 7 3.5046 -0.8289 -1.1696 8 6 4.2811 -0.3861 -2.1783 9 8 5.4906 -0.3817 -2.0574 10 6 3.6617 0.0943 -3.4323 11 6 2.5016 -0.5179 -3.9195 12 6 1.9140 -0.0713 -5.0894 13 6 2.4689 0.9748 -5.7933 14 6 3.6385 1.5996 -5.3215 15 6 4.2110 2.6736 -6.0421 16 1 4.0913 2.7292 -7.1140 17 6 4.9325 3.6640 -5.3663 18 7 4.9055 3.7160 -4.0593 19 14 5.9343 4.9116 -6.3302 20 1 5.0367 5.6753 -7.2338 21 1 6.6003 5.8462 -5.3876 22 1 6.9626 4.2050 -7.1354 23 6 4.2344 1.1507 -4.1307 24 6 2.0413 -0.7237 -1.2496 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5150 0.8893 27 1 -0.3634 0.5125 -0.8907 28 1 1.7236 1.8649 -0.7656 29 1 1.6582 -0.2245 2.1389 30 1 1.6968 -1.7572 1.2352 31 1 3.9335 -1.1895 2.1670 32 1 3.9159 0.3390 1.2541 33 1 3.8376 -2.4816 0.0867 34 1 5.1898 -1.3266 -0.0150 35 1 2.0610 -1.3417 -3.3776 36 1 1.0164 -0.5478 -5.4549 37 1 2.0064 1.3154 -6.7078 38 1 5.4059 4.4023 -3.5908 39 1 5.1324 1.6232 -3.7609 40 1 1.6053 -1.7215 -1.2981 41 1 1.7615 -0.1591 -2.1390 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000179842693.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:00:36 Heat of formation + Delta-G solvation = -67.508499 kcal Electronic energy + Delta-G solvation = -23804.613307 eV Core-core repulsion = 20455.841436 eV Total energy + Delta-G solvation = -3348.771870 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.12899 -38.12993 -37.00691 -35.00016 -33.82313 -32.53460 -31.47153 -29.89919 -29.48479 -26.83052 -25.46274 -25.36377 -22.77626 -21.44649 -20.95067 -20.04287 -18.85353 -17.59211 -16.59023 -15.99122 -15.45041 -15.13362 -14.86657 -14.79992 -14.70823 -14.15772 -13.81711 -13.38345 -13.06873 -12.88270 -12.72219 -12.58943 -12.39838 -12.11705 -11.95053 -11.66136 -11.53356 -11.17219 -11.12060 -10.96950 -10.84829 -10.73718 -10.52301 -10.24132 -10.06046 -9.91552 -9.68789 -9.26646 -8.94666 -8.16015 -7.61696 -7.47669 -6.77119 -4.45691 2.27211 2.79034 3.07369 3.09160 3.13310 3.42522 3.77011 3.92056 4.35905 4.59226 4.69660 4.83036 4.95291 5.12229 5.31860 5.44027 5.48934 5.55744 5.60164 5.63955 5.72845 5.84177 5.88174 5.98062 6.05373 6.11225 6.13992 6.20474 6.26494 6.47350 6.66103 6.91260 6.96449 7.04086 7.19701 7.35750 7.64088 7.75861 7.86453 7.89807 8.01019 8.14780 8.47897 8.79552 8.80246 8.90847 10.17287 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.019501 B = 0.005055 C = 0.004818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1435.449343 B = 5538.081363 C = 5810.377853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.113 3.887 3 O -0.551 6.551 4 C -0.103 4.103 5 C -0.130 4.130 6 C 0.112 3.888 7 N -0.606 5.606 8 C 0.572 3.428 9 O -0.550 6.550 10 C -0.124 4.124 11 C -0.223 4.223 12 C -0.100 4.100 13 C -0.209 4.209 14 C 0.102 3.898 15 C -0.461 4.461 16 H 0.080 0.920 17 C 0.072 3.928 18 N -0.795 5.795 19 Si 0.913 3.087 20 H -0.265 1.265 21 H -0.278 1.278 22 H -0.263 1.263 23 C -0.089 4.089 24 C 0.071 3.929 25 H 0.064 0.936 26 H 0.064 0.936 27 H 0.063 0.937 28 H 0.380 0.620 29 H 0.067 0.933 30 H 0.071 0.929 31 H 0.068 0.932 32 H 0.077 0.923 33 H 0.058 0.942 34 H 0.090 0.910 35 H 0.098 0.902 36 H 0.093 0.907 37 H 0.096 0.904 38 H 0.284 0.716 39 H 0.130 0.870 40 H 0.066 0.934 41 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.675 -6.263 8.092 12.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.071 3.929 3 O -0.358 6.358 4 C -0.140 4.140 5 C -0.169 4.169 6 C -0.011 4.011 7 N -0.339 5.339 8 C 0.364 3.636 9 O -0.428 6.428 10 C -0.127 4.127 11 C -0.242 4.242 12 C -0.119 4.119 13 C -0.229 4.229 14 C 0.100 3.900 15 C -0.490 4.490 16 H 0.098 0.902 17 C -0.146 4.146 18 N -0.421 5.421 19 Si 0.738 3.262 20 H -0.190 1.190 21 H -0.203 1.203 22 H -0.188 1.188 23 C -0.109 4.109 24 C -0.053 4.053 25 H 0.083 0.917 26 H 0.083 0.917 27 H 0.082 0.918 28 H 0.228 0.772 29 H 0.086 0.914 30 H 0.090 0.910 31 H 0.086 0.914 32 H 0.096 0.904 33 H 0.076 0.924 34 H 0.108 0.892 35 H 0.116 0.884 36 H 0.111 0.889 37 H 0.114 0.886 38 H 0.095 0.905 39 H 0.148 0.852 40 H 0.084 0.916 41 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -6.639 -6.310 8.919 12.785 hybrid contribution -0.027 0.722 -0.813 1.088 sum -6.666 -5.588 8.106 11.890 Atomic orbital electron populations 1.22426 0.95500 1.02594 1.02859 1.21559 0.92176 0.83687 0.95440 1.86510 1.77447 1.22359 1.49453 1.21493 0.96329 0.99457 0.96735 1.21825 0.95306 1.02429 0.97309 1.21492 0.99876 0.95528 0.84180 1.47747 1.06195 1.61989 1.17959 1.18899 0.86140 0.75184 0.83398 1.90674 1.14573 1.55437 1.82098 1.19455 0.97808 1.00324 0.95085 1.20544 0.99247 1.04316 1.00130 1.20455 0.98700 0.97385 0.95313 1.21152 0.98064 1.01507 1.02149 1.17593 0.89725 0.91281 0.91449 1.19549 1.28718 1.05365 0.95418 0.90222 1.25921 0.95042 0.98613 0.94975 1.69734 1.33204 1.30914 1.08205 0.86278 0.80202 0.79702 0.80034 1.19009 1.20257 1.18802 1.21576 0.99471 0.94065 0.95830 1.22960 0.80833 1.01182 1.00279 0.91683 0.91743 0.91775 0.77179 0.91414 0.90992 0.91365 0.90441 0.92395 0.89197 0.88398 0.88864 0.88593 0.90541 0.85211 0.91616 0.86290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.80 8.82 37.16 0.33 -1.47 16 2 C 0.11 1.46 1.01 -90.51 -0.09 1.37 16 3 O -0.55 -8.61 12.17 -35.23 -0.43 -9.04 16 4 C -0.10 -1.20 4.92 -26.69 -0.13 -1.33 16 5 C -0.13 -1.72 5.94 -26.61 -0.16 -1.88 16 6 C 0.11 1.70 6.44 -3.71 -0.02 1.67 16 7 N -0.61 -10.76 2.91 -173.86 -0.51 -11.27 16 8 C 0.57 12.89 7.38 -12.31 -0.09 12.80 16 9 O -0.55 -14.13 16.23 5.32 0.09 -14.04 16 10 C -0.12 -2.88 5.28 -105.04 -0.56 -3.44 16 11 C -0.22 -4.55 7.36 -38.92 -0.29 -4.84 16 12 C -0.10 -2.05 10.01 -39.72 -0.40 -2.45 16 13 C -0.21 -4.81 9.78 -38.81 -0.38 -5.19 16 14 C 0.10 2.64 5.54 -106.87 -0.59 2.05 16 15 C -0.46 -11.96 9.06 -37.73 -0.34 -12.30 16 16 H 0.08 1.96 7.87 -52.49 -0.41 1.55 16 17 C 0.07 1.81 5.25 -17.35 -0.09 1.72 16 18 N -0.80 -20.71 10.87 55.55 0.60 -20.11 16 19 Si 0.91 18.77 29.57 -169.99 -5.03 13.75 16 20 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 21 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 22 H -0.26 -5.40 7.11 56.52 0.40 -5.00 16 23 C -0.09 -2.35 8.21 -38.44 -0.32 -2.66 16 24 C 0.07 1.04 3.69 -3.71 -0.01 1.02 16 25 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.38 5.47 9.05 45.56 0.41 5.88 16 29 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 32 H 0.08 1.24 7.61 -51.93 -0.40 0.84 16 33 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.09 1.52 6.99 -51.93 -0.36 1.16 16 35 H 0.10 1.73 6.03 -52.49 -0.32 1.41 16 36 H 0.09 1.61 8.06 -52.49 -0.42 1.19 16 37 H 0.10 2.06 8.06 -52.49 -0.42 1.64 16 38 H 0.28 6.85 8.30 -40.82 -0.34 6.52 16 39 H 0.13 3.74 6.19 -52.49 -0.32 3.41 16 40 H 0.07 0.83 8.05 -51.93 -0.42 0.41 16 41 H 0.12 1.93 4.47 -51.93 -0.23 1.70 16 LS Contribution 329.44 15.07 4.96 4.96 Total: -1.00 -29.83 329.44 -8.44 -38.27 By element: Atomic # 1 Polarization: 17.38 SS G_CDS: -4.99 Total: 12.39 kcal Atomic # 6 Polarization: -11.78 SS G_CDS: -3.14 Total: -14.92 kcal Atomic # 7 Polarization: -31.47 SS G_CDS: 0.10 Total: -31.37 kcal Atomic # 8 Polarization: -22.74 SS G_CDS: -0.34 Total: -23.08 kcal Atomic # 14 Polarization: 18.77 SS G_CDS: -5.03 Total: 13.75 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -29.83 -8.44 -38.27 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179842693.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.240 kcal (2) G-P(sol) polarization free energy of solvation -29.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds