Wall clock time and date at job start Tue Mar 31 2020 07:00:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42901 * 109.51948 * 2 1 4 4 C 1.53038 * 109.50160 * 120.08012 * 2 1 3 5 5 C 1.53034 * 109.53942 * 181.32078 * 4 2 1 6 6 C 1.53194 * 109.31463 * 298.63248 * 5 4 2 7 7 N 1.46931 * 108.77060 * 54.63879 * 6 5 4 8 8 C 1.34773 * 120.63197 * 126.41712 * 7 6 5 9 9 O 1.21554 * 119.99810 * 354.19300 * 8 7 6 10 10 C 1.47883 * 120.00367 * 174.19352 * 8 7 6 11 11 C 1.39922 * 120.02443 * 324.57232 * 10 8 7 12 12 C 1.38329 * 120.35837 * 179.78562 * 11 10 8 13 13 C 1.37755 * 120.41162 * 0.46119 * 12 11 10 14 14 C 1.40744 * 120.03840 * 359.79268 * 13 12 11 15 15 C 1.41442 * 120.17995 * 179.97438 * 14 13 12 16 16 H 1.08001 * 119.99393 * 330.75038 * 15 14 13 17 17 C 1.39936 * 120.00330 * 150.74641 * 15 14 13 18 18 N 1.30823 * 119.99909 * 349.38769 * 17 15 14 19 19 Si 1.86798 * 119.99867 * 169.38114 * 17 15 14 20 20 H 1.48508 * 109.46942 * 60.00460 * 19 17 15 21 21 H 1.48507 * 109.46897 * 180.02562 * 19 17 15 22 22 H 1.48493 * 109.47372 * 300.00453 * 19 17 15 23 23 C 1.38998 * 120.02631 * 144.83773 * 10 8 7 24 24 C 1.46929 * 118.73609 * 306.38895 * 7 6 5 25 25 H 1.09004 * 109.46844 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47527 * 300.07342 * 1 2 3 27 27 H 1.08998 * 109.47272 * 60.08202 * 1 2 3 28 28 H 0.96698 * 114.00680 * 299.91865 * 3 2 1 29 29 H 1.09001 * 109.45881 * 301.34205 * 4 2 1 30 30 H 1.09001 * 109.45563 * 61.29703 * 4 2 1 31 31 H 1.09006 * 109.49955 * 178.68475 * 5 4 2 32 32 H 1.08999 * 109.50272 * 58.59125 * 5 4 2 33 33 H 1.08999 * 109.58715 * 294.85494 * 6 5 4 34 34 H 1.08995 * 109.70584 * 174.49212 * 6 5 4 35 35 H 1.07997 * 119.82007 * 359.97438 * 11 10 8 36 36 H 1.07994 * 119.79130 * 180.25637 * 12 11 10 37 37 H 1.07995 * 119.98052 * 179.76122 * 13 12 11 38 38 H 0.97004 * 120.00055 * 179.97438 * 18 17 15 39 39 H 1.07996 * 120.20321 * 0.02562 * 23 10 8 40 40 H 1.08996 * 109.58821 * 293.82131 * 24 7 6 41 41 H 1.09006 * 109.70063 * 173.46685 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0074 1.3469 0.0000 4 6 2.0408 -0.7230 1.2483 5 6 3.5708 -0.6948 1.2660 6 6 4.1054 -1.4265 0.0307 7 7 3.5046 -0.8289 -1.1696 8 6 4.2811 -0.3861 -2.1783 9 8 5.4906 -0.3817 -2.0574 10 6 3.6617 0.0943 -3.4323 11 6 2.5016 -0.5179 -3.9195 12 6 1.9140 -0.0713 -5.0894 13 6 2.4689 0.9748 -5.7933 14 6 3.6385 1.5996 -5.3215 15 6 4.2110 2.6736 -6.0421 16 1 4.0913 2.7292 -7.1140 17 6 4.9325 3.6640 -5.3663 18 7 4.9055 3.7160 -4.0593 19 14 5.9343 4.9116 -6.3302 20 1 5.0367 5.6753 -7.2338 21 1 6.6003 5.8462 -5.3876 22 1 6.9626 4.2050 -7.1354 23 6 4.2344 1.1507 -4.1307 24 6 2.0413 -0.7237 -1.2496 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5150 0.8893 27 1 -0.3634 0.5125 -0.8907 28 1 1.7236 1.8649 -0.7656 29 1 1.6582 -0.2245 2.1389 30 1 1.6968 -1.7572 1.2352 31 1 3.9335 -1.1895 2.1670 32 1 3.9159 0.3390 1.2541 33 1 3.8376 -2.4816 0.0867 34 1 5.1898 -1.3266 -0.0150 35 1 2.0610 -1.3417 -3.3776 36 1 1.0164 -0.5478 -5.4549 37 1 2.0064 1.3154 -6.7078 38 1 5.4059 4.4023 -3.5908 39 1 5.1324 1.6232 -3.7609 40 1 1.6053 -1.7215 -1.2981 41 1 1.7615 -0.1591 -2.1390 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000179842693.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:00:35 Heat of formation + Delta-G solvation = -87.295214 kcal Electronic energy + Delta-G solvation = -23805.471323 eV Core-core repulsion = 20455.841436 eV Total energy + Delta-G solvation = -3349.629887 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.56427 -39.57393 -38.74857 -36.35396 -35.62614 -33.88988 -32.62688 -31.55737 -31.28338 -27.89325 -27.16536 -26.81497 -24.18254 -22.96718 -22.57231 -21.27189 -20.35917 -19.31427 -17.96583 -17.64181 -17.05546 -16.71286 -16.42954 -16.12353 -15.94510 -15.43064 -15.25088 -14.98222 -14.58993 -14.38621 -14.21942 -13.85771 -13.67616 -13.50730 -13.11183 -13.01710 -12.93066 -12.82071 -12.54774 -12.43976 -12.22296 -12.02842 -11.93287 -11.88546 -11.59185 -11.34874 -11.09812 -11.01368 -10.65180 -9.64721 -9.33824 -9.30535 -8.61852 -6.40377 0.46511 1.00336 1.36004 1.47309 1.48590 1.88084 2.14237 2.19983 2.76671 3.33376 3.61579 3.65411 3.73470 3.93172 4.00148 4.07836 4.30453 4.43088 4.49294 4.53647 4.58304 4.74272 4.75831 4.81904 4.86489 4.91386 4.96565 5.07057 5.08902 5.18447 5.20400 5.30560 5.33066 5.40741 5.51110 5.64614 5.84447 5.94546 6.04648 6.27655 6.38572 6.61357 6.78714 6.89197 6.94225 7.22458 8.33754 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.019501 B = 0.005055 C = 0.004818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1435.449343 B = 5538.081363 C = 5810.377853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.107 3.893 3 O -0.577 6.577 4 C -0.101 4.101 5 C -0.125 4.125 6 C 0.105 3.895 7 N -0.595 5.595 8 C 0.560 3.440 9 O -0.599 6.599 10 C -0.131 4.131 11 C -0.196 4.196 12 C -0.094 4.094 13 C -0.211 4.211 14 C 0.071 3.929 15 C -0.499 4.499 16 H 0.083 0.917 17 C 0.028 3.972 18 N -0.834 5.834 19 Si 0.983 3.017 20 H -0.252 1.252 21 H -0.274 1.274 22 H -0.263 1.263 23 C -0.125 4.125 24 C 0.063 3.937 25 H 0.090 0.910 26 H 0.068 0.932 27 H 0.062 0.938 28 H 0.380 0.620 29 H 0.077 0.923 30 H 0.106 0.894 31 H 0.098 0.902 32 H 0.038 0.962 33 H 0.096 0.904 34 H 0.061 0.939 35 H 0.138 0.862 36 H 0.142 0.858 37 H 0.110 0.890 38 H 0.283 0.717 39 H 0.089 0.911 40 H 0.105 0.895 41 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.679 -8.493 8.732 16.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.066 3.934 3 O -0.384 6.384 4 C -0.138 4.138 5 C -0.163 4.163 6 C -0.016 4.016 7 N -0.326 5.326 8 C 0.352 3.648 9 O -0.482 6.482 10 C -0.135 4.135 11 C -0.215 4.215 12 C -0.112 4.112 13 C -0.231 4.231 14 C 0.069 3.931 15 C -0.529 4.529 16 H 0.101 0.899 17 C -0.186 4.186 18 N -0.461 5.461 19 Si 0.803 3.197 20 H -0.176 1.176 21 H -0.198 1.198 22 H -0.187 1.187 23 C -0.146 4.146 24 C -0.058 4.058 25 H 0.109 0.891 26 H 0.087 0.913 27 H 0.081 0.919 28 H 0.228 0.772 29 H 0.095 0.905 30 H 0.124 0.876 31 H 0.117 0.883 32 H 0.057 0.943 33 H 0.114 0.886 34 H 0.080 0.920 35 H 0.156 0.844 36 H 0.159 0.841 37 H 0.128 0.872 38 H 0.094 0.906 39 H 0.107 0.893 40 H 0.122 0.878 41 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -9.708 -8.567 9.585 16.109 hybrid contribution 0.772 1.227 -0.907 1.710 sum -8.936 -7.340 8.678 14.458 Atomic orbital electron populations 1.22353 0.92766 1.04343 1.03071 1.21829 0.94190 0.82156 0.95201 1.86512 1.78245 1.24052 1.49593 1.21586 0.94555 1.01312 0.96353 1.21777 0.96936 1.00112 0.97465 1.21756 0.98437 0.97649 0.83807 1.47827 1.07500 1.60032 1.17252 1.18946 0.85875 0.75570 0.84434 1.90637 1.16637 1.57821 1.83083 1.19686 0.98694 0.99638 0.95444 1.20972 0.97102 1.03804 0.99622 1.20928 0.99692 0.96134 0.94454 1.21447 0.97110 1.01808 1.02739 1.17908 0.91202 0.92157 0.91859 1.19830 1.30845 1.06484 0.95717 0.89929 1.26789 0.95677 1.00363 0.95727 1.69856 1.34524 1.31904 1.09810 0.85238 0.78601 0.77205 0.78614 1.17557 1.19837 1.18732 1.21313 0.99455 0.96265 0.97556 1.23233 0.78629 1.03262 1.00721 0.89071 0.91299 0.91941 0.77231 0.90480 0.87606 0.88325 0.94308 0.88602 0.92040 0.84434 0.84078 0.87217 0.90622 0.89265 0.87753 0.87990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.73 8.82 71.98 0.64 -2.09 16 2 C 0.11 2.46 1.01 -10.72 -0.01 2.45 16 3 O -0.58 -17.90 12.17 -148.98 -1.81 -19.72 16 4 C -0.10 -1.96 4.92 30.62 0.15 -1.81 16 5 C -0.12 -3.05 5.94 30.67 0.18 -2.86 16 6 C 0.11 3.03 6.44 86.36 0.56 3.59 16 7 N -0.60 -20.47 2.91 -822.26 -2.40 -22.87 16 8 C 0.56 25.95 7.38 86.80 0.64 26.59 16 9 O -0.60 -32.74 16.23 -3.89 -0.06 -32.81 16 10 C -0.13 -6.26 5.28 -20.13 -0.11 -6.36 16 11 C -0.20 -7.52 7.36 22.70 0.17 -7.35 16 12 C -0.09 -3.57 10.01 22.18 0.22 -3.34 16 13 C -0.21 -9.60 9.78 22.77 0.22 -9.38 16 14 C 0.07 3.82 5.54 -21.32 -0.12 3.70 16 15 C -0.50 -27.17 9.06 23.47 0.21 -26.96 16 16 H 0.08 4.24 7.87 -2.91 -0.02 4.22 16 17 C 0.03 1.47 5.25 85.25 0.45 1.91 16 18 N -0.83 -46.63 10.87 21.82 0.24 -46.39 16 19 Si 0.98 40.14 29.57 68.60 2.03 42.17 16 20 H -0.25 -9.62 7.11 99.48 0.71 -8.91 16 21 H -0.27 -10.84 7.11 99.48 0.71 -10.13 16 22 H -0.26 -10.58 7.11 99.48 0.71 -9.87 16 23 C -0.13 -6.99 8.21 23.01 0.19 -6.80 16 24 C 0.06 1.65 3.69 86.36 0.32 1.97 16 25 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 26 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 27 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 28 H 0.38 11.25 9.05 -74.06 -0.67 10.58 16 29 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 30 H 0.11 1.40 8.14 -2.39 -0.02 1.38 16 31 H 0.10 1.81 8.14 -2.38 -0.02 1.79 16 32 H 0.04 1.24 7.61 -2.39 -0.02 1.23 16 33 H 0.10 2.08 8.14 -2.39 -0.02 2.06 16 34 H 0.06 2.13 6.99 -2.39 -0.02 2.11 16 35 H 0.14 4.19 6.03 -2.91 -0.02 4.17 16 36 H 0.14 4.06 8.06 -2.91 -0.02 4.04 16 37 H 0.11 4.59 8.06 -2.91 -0.02 4.56 16 38 H 0.28 14.75 8.30 -92.71 -0.77 13.98 16 39 H 0.09 5.64 6.19 -2.91 -0.02 5.63 16 40 H 0.10 1.98 8.05 -2.39 -0.02 1.97 16 41 H 0.10 3.02 4.47 -2.38 -0.01 3.01 16 Total: -1.00 -72.11 329.44 2.08 -70.03 By element: Atomic # 1 Polarization: 35.95 SS G_CDS: 0.38 Total: 36.32 kcal Atomic # 6 Polarization: -30.45 SS G_CDS: 3.71 Total: -26.74 kcal Atomic # 7 Polarization: -67.10 SS G_CDS: -2.16 Total: -69.26 kcal Atomic # 8 Polarization: -50.65 SS G_CDS: -1.88 Total: -52.53 kcal Atomic # 14 Polarization: 40.14 SS G_CDS: 2.03 Total: 42.17 kcal Total: -72.11 2.08 -70.03 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179842693.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.266 kcal (2) G-P(sol) polarization free energy of solvation -72.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds