Wall clock time and date at job start Tue Mar 31 2020 05:44:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.37971 * 119.82212 * 2 1 4 4 C 1.39245 * 120.23517 * 179.97438 * 3 2 1 5 5 C 1.38926 * 118.88072 * 359.65961 * 4 3 2 6 6 C 1.37692 * 120.78131 * 0.57702 * 5 4 3 7 7 C 1.38239 * 119.82738 * 180.02562 * 2 1 3 8 8 C 1.50706 * 120.11357 * 0.20786 * 7 2 1 9 9 C 1.51649 * 107.03768 * 180.95734 * 5 4 3 10 10 H 1.08993 * 110.93494 * 256.93488 * 9 5 4 11 11 C 1.50695 * 110.93526 * 133.29254 * 9 5 4 12 12 O 1.21279 * 120.00199 * 0.02562 * 11 9 5 13 13 N 1.34773 * 120.00010 * 179.97438 * 11 9 5 14 14 C 1.46505 * 119.99977 * 0.02562 * 13 11 9 15 15 C 1.46498 * 120.00101 * 180.02562 * 13 11 9 16 16 C 1.50699 * 109.47383 * 90.00588 * 15 13 11 17 17 H 1.07997 * 119.99883 * 359.97438 * 16 15 13 18 18 C 1.37877 * 120.00498 * 180.02562 * 16 15 13 19 19 N 1.31516 * 119.99598 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 120.00380 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.46876 * 59.99602 * 20 18 16 22 22 H 1.48500 * 109.47282 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.46979 * 299.99695 * 20 18 16 24 24 C 1.54713 * 101.94437 * 15.13204 * 9 5 4 25 25 O 1.36134 * 129.90189 * 179.07275 * 4 3 2 26 26 H 1.08994 * 109.47383 * 89.99738 * 1 2 3 27 27 H 1.09001 * 109.46805 * 209.99717 * 1 2 3 28 28 H 1.09000 * 109.46921 * 329.99262 * 1 2 3 29 29 H 1.07999 * 119.88292 * 0.02562 * 3 2 1 30 30 H 1.08001 * 120.01120 * 179.58684 * 6 5 4 31 31 H 1.08998 * 109.47125 * 89.99866 * 8 7 2 32 32 H 1.09002 * 109.47221 * 209.99908 * 8 7 2 33 33 H 1.09002 * 109.47229 * 330.00239 * 8 7 2 34 34 H 1.08999 * 109.47273 * 89.99313 * 14 13 11 35 35 H 1.09005 * 109.46931 * 209.99896 * 14 13 11 36 36 H 1.08996 * 109.46492 * 329.99443 * 14 13 11 37 37 H 1.09008 * 109.47509 * 210.00441 * 15 13 11 38 38 H 1.09002 * 109.47380 * 329.99978 * 15 13 11 39 39 H 0.97000 * 119.99957 * 180.02562 * 19 18 16 40 40 H 1.09003 * 110.74433 * 93.09541 * 24 9 5 41 41 H 1.08991 * 110.74721 * 216.25943 * 24 9 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1932 1.1970 0.0000 4 6 3.5856 1.2070 0.0005 5 6 4.2654 -0.0045 0.0083 6 6 3.5785 -1.1979 0.0034 7 6 2.1946 -1.1993 -0.0005 8 6 1.4398 -2.5036 -0.0058 9 6 5.7471 0.3174 0.0312 10 1 6.1913 0.1772 -0.9542 11 6 6.4628 -0.5134 1.0648 12 8 5.8429 -1.3084 1.7391 13 7 7.7918 -0.3739 1.2392 14 6 8.5408 0.5861 0.4244 15 6 8.4877 -1.1820 2.2437 16 6 8.9601 -2.4675 1.6149 17 1 8.7614 -2.6631 0.5716 18 6 9.6449 -3.3943 2.3718 19 7 9.8864 -3.1563 3.6425 20 14 10.2298 -4.9880 1.5926 21 1 11.1582 -4.6810 0.4750 22 1 10.9353 -5.8072 2.6107 23 1 9.0614 -5.7427 1.0724 24 6 5.7438 1.8124 0.4293 25 8 4.4513 2.2575 -0.0163 26 1 -0.3634 0.0000 -1.0276 27 1 -0.3633 -0.8900 0.5138 28 1 -0.3633 0.8899 0.5140 29 1 1.6484 2.1295 0.0004 30 1 4.1196 -2.1326 0.0028 31 1 1.2610 -2.8158 -1.0348 32 1 2.0265 -3.2651 0.5081 33 1 0.4858 -2.3735 0.5052 34 1 8.5574 1.5536 0.9261 35 1 9.5618 0.2292 0.2891 36 1 8.0602 0.6895 -0.5485 37 1 9.3452 -0.6278 2.6256 38 1 7.8064 -1.4076 3.0641 39 1 10.3685 -3.8081 4.1750 40 1 5.8396 1.9246 1.5093 41 1 6.5395 2.3508 -0.0854 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000184078228.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:31 Heat of formation + Delta-G solvation = -42.747072 kcal Electronic energy + Delta-G solvation = -23099.988856 eV Core-core repulsion = 19752.290722 eV Total energy + Delta-G solvation = -3347.698134 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 2.80 seconds Orbital eigenvalues (eV) -41.31189 -38.75620 -38.00663 -34.93135 -33.19165 -32.62902 -31.90531 -30.92410 -27.85975 -26.89024 -26.30976 -25.89667 -23.83448 -22.44228 -21.86005 -20.45646 -18.54082 -17.18965 -16.80372 -16.50018 -16.42148 -15.47514 -15.13881 -14.67229 -14.55490 -14.23407 -14.06218 -13.90742 -13.62997 -13.01273 -12.79996 -12.71765 -12.50137 -12.29993 -12.20867 -12.09792 -11.92027 -11.79675 -11.61225 -11.28896 -11.20804 -10.94388 -10.68035 -10.55703 -10.45975 -10.19256 -9.69304 -9.02064 -8.59345 -8.46815 -7.86268 -7.72781 -6.07918 -4.13131 1.36352 1.51884 3.20386 3.29209 3.30371 3.34073 3.37634 3.65064 3.98753 4.39992 4.42432 4.65084 4.88164 4.95593 4.96495 5.05183 5.19548 5.26583 5.28987 5.38727 5.42863 5.47369 5.57267 5.66532 5.70900 5.71713 5.82119 5.82926 5.86859 6.02974 6.13559 6.25728 6.37577 6.56537 6.69996 6.78518 6.98792 7.27655 7.38126 7.46223 7.87785 8.18502 8.31157 8.83926 8.99809 9.52049 11.00180 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.019538 B = 0.004413 C = 0.003787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1432.796965 B = 6343.063864 C = 7392.309395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.057 4.057 3 C -0.142 4.142 4 C 0.101 3.899 5 C -0.145 4.145 6 C -0.034 4.034 7 C -0.119 4.119 8 C -0.110 4.110 9 C -0.103 4.103 10 H 0.115 0.885 11 C 0.514 3.486 12 O -0.525 6.525 13 N -0.600 5.600 14 C 0.078 3.922 15 C 0.246 3.754 16 C -0.529 4.529 17 H 0.057 0.943 18 C 0.062 3.938 19 N -0.894 5.894 20 Si 0.899 3.101 21 H -0.277 1.277 22 H -0.286 1.286 23 H -0.276 1.276 24 C 0.066 3.934 25 O -0.304 6.304 26 H 0.070 0.930 27 H 0.072 0.928 28 H 0.065 0.935 29 H 0.125 0.875 30 H 0.129 0.871 31 H 0.066 0.934 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.046 0.954 35 H 0.077 0.923 36 H 0.057 0.943 37 H 0.033 0.967 38 H 0.044 0.956 39 H 0.264 0.736 40 H 0.081 0.919 41 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.320 9.336 -9.265 18.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.057 4.057 3 C -0.160 4.160 4 C 0.056 3.944 5 C -0.146 4.146 6 C -0.052 4.052 7 C -0.120 4.120 8 C -0.166 4.166 9 C -0.124 4.124 10 H 0.133 0.867 11 C 0.299 3.701 12 O -0.401 6.401 13 N -0.332 5.332 14 C -0.066 4.066 15 C 0.127 3.873 16 C -0.568 4.568 17 H 0.075 0.925 18 C -0.140 4.140 19 N -0.533 5.533 20 Si 0.726 3.274 21 H -0.202 1.202 22 H -0.211 1.211 23 H -0.202 1.202 24 C -0.009 4.009 25 O -0.218 6.218 26 H 0.089 0.911 27 H 0.091 0.909 28 H 0.084 0.916 29 H 0.143 0.857 30 H 0.147 0.853 31 H 0.085 0.915 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.065 0.935 35 H 0.096 0.904 36 H 0.076 0.924 37 H 0.051 0.949 38 H 0.062 0.938 39 H 0.074 0.926 40 H 0.099 0.901 41 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -13.556 9.059 -8.765 18.511 hybrid contribution 0.877 -0.942 -0.385 1.343 sum -12.679 8.117 -9.149 17.617 Atomic orbital electron populations 1.20833 0.90916 1.02920 1.02301 1.19370 0.95748 0.91643 0.98944 1.19927 0.89594 0.98300 1.08214 1.19473 0.91334 0.86000 0.97555 1.20210 0.93216 0.93907 1.07282 1.20250 0.92760 0.97207 0.95011 1.19599 0.93116 0.94967 1.04274 1.20763 0.99808 0.94090 1.01973 1.21594 0.93718 0.95872 1.01246 0.86726 1.19764 0.82542 0.83641 0.84160 1.90688 1.65844 1.36594 1.47012 1.48160 1.06572 1.39778 1.38719 1.21747 0.98422 0.92238 0.94203 1.19312 0.91921 0.89373 0.86691 1.21379 1.35828 1.02704 0.96850 0.92520 1.24932 0.95915 0.98398 0.94777 1.69921 1.40898 1.36076 1.06407 0.86553 0.78828 0.83158 0.78856 1.20228 1.21122 1.20172 1.23815 0.84093 0.91957 1.01023 1.86791 1.20030 1.32815 1.82207 0.91106 0.90921 0.91631 0.85729 0.85318 0.91527 0.91407 0.91391 0.93525 0.90398 0.92448 0.94871 0.93797 0.92605 0.90117 0.86912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.02 9.59 36.01 0.35 -0.67 16 2 C -0.06 -0.73 5.87 -104.72 -0.61 -1.34 16 3 C -0.14 -1.94 9.71 -39.31 -0.38 -2.32 16 4 C 0.10 1.59 7.03 -38.95 -0.27 1.31 16 5 C -0.14 -2.45 5.39 -104.10 -0.56 -3.01 16 6 C -0.03 -0.57 8.73 -39.73 -0.35 -0.92 16 7 C -0.12 -1.67 5.89 -104.56 -0.62 -2.29 16 8 C -0.11 -1.22 9.61 36.01 0.35 -0.87 16 9 C -0.10 -1.65 2.53 -91.56 -0.23 -1.88 16 10 H 0.12 1.61 7.25 -51.93 -0.38 1.23 16 11 C 0.51 10.67 6.95 -10.99 -0.08 10.59 16 12 O -0.53 -13.19 14.76 5.56 0.08 -13.11 16 13 N -0.60 -12.43 2.86 -182.95 -0.52 -12.95 16 14 C 0.08 1.17 9.18 59.85 0.55 1.72 16 15 C 0.25 6.36 5.16 -5.20 -0.03 6.33 16 16 C -0.53 -14.86 9.39 -34.44 -0.32 -15.18 16 17 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 18 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 19 N -0.89 -26.43 13.29 55.43 0.74 -25.70 16 20 Si 0.90 21.71 29.54 -169.99 -5.02 16.69 16 21 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 22 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 23 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 24 C 0.07 0.90 6.59 38.06 0.25 1.15 16 25 O -0.30 -4.54 11.11 -20.17 -0.22 -4.76 16 26 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 27 H 0.07 0.59 5.94 -51.93 -0.31 0.28 16 28 H 0.06 0.52 8.08 -51.93 -0.42 0.10 16 29 H 0.12 1.43 8.06 -52.49 -0.42 1.00 16 30 H 0.13 2.27 7.82 -52.49 -0.41 1.86 16 31 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.07 0.79 8.09 -51.93 -0.42 0.37 16 33 H 0.07 0.63 5.94 -51.93 -0.31 0.32 16 34 H 0.05 0.58 8.12 -51.93 -0.42 0.16 16 35 H 0.08 1.21 8.07 -51.93 -0.42 0.79 16 36 H 0.06 0.69 6.11 -51.93 -0.32 0.38 16 37 H 0.03 0.86 8.07 -51.92 -0.42 0.44 16 38 H 0.04 1.29 7.42 -51.93 -0.39 0.90 16 39 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 40 H 0.08 1.14 7.91 -51.93 -0.41 0.73 16 41 H 0.11 1.13 7.54 -51.93 -0.39 0.74 16 LS Contribution 336.78 15.07 5.08 5.08 Total: -1.00 -33.60 336.78 -7.75 -41.36 By element: Atomic # 1 Polarization: 4.93 SS G_CDS: -5.82 Total: -0.89 kcal Atomic # 6 Polarization: -3.66 SS G_CDS: -2.06 Total: -5.72 kcal Atomic # 7 Polarization: -38.86 SS G_CDS: 0.21 Total: -38.65 kcal Atomic # 8 Polarization: -17.73 SS G_CDS: -0.14 Total: -17.87 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -33.60 -7.75 -41.36 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184078228.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.390 kcal (2) G-P(sol) polarization free energy of solvation -33.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.80 seconds