Wall clock time and date at job start Tue Mar 31 2020 05:44:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.37971 * 119.82212 * 2 1 4 4 C 1.39245 * 120.23517 * 179.97438 * 3 2 1 5 5 C 1.38926 * 118.88072 * 359.65961 * 4 3 2 6 6 C 1.37692 * 120.78131 * 0.57702 * 5 4 3 7 7 C 1.38239 * 119.82738 * 180.02562 * 2 1 3 8 8 C 1.50706 * 120.11357 * 0.20786 * 7 2 1 9 9 C 1.51649 * 107.03768 * 180.95734 * 5 4 3 10 10 H 1.08993 * 110.93494 * 256.93488 * 9 5 4 11 11 C 1.50695 * 110.93526 * 133.29254 * 9 5 4 12 12 O 1.21279 * 120.00199 * 0.02562 * 11 9 5 13 13 N 1.34773 * 120.00010 * 179.97438 * 11 9 5 14 14 C 1.46505 * 119.99977 * 0.02562 * 13 11 9 15 15 C 1.46498 * 120.00101 * 180.02562 * 13 11 9 16 16 C 1.50699 * 109.47383 * 90.00588 * 15 13 11 17 17 H 1.07997 * 119.99883 * 359.97438 * 16 15 13 18 18 C 1.37877 * 120.00498 * 180.02562 * 16 15 13 19 19 N 1.31516 * 119.99598 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 120.00380 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.46876 * 59.99602 * 20 18 16 22 22 H 1.48500 * 109.47282 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.46979 * 299.99695 * 20 18 16 24 24 C 1.54713 * 101.94437 * 15.13204 * 9 5 4 25 25 O 1.36134 * 129.90189 * 179.07275 * 4 3 2 26 26 H 1.08994 * 109.47383 * 89.99738 * 1 2 3 27 27 H 1.09001 * 109.46805 * 209.99717 * 1 2 3 28 28 H 1.09000 * 109.46921 * 329.99262 * 1 2 3 29 29 H 1.07999 * 119.88292 * 0.02562 * 3 2 1 30 30 H 1.08001 * 120.01120 * 179.58684 * 6 5 4 31 31 H 1.08998 * 109.47125 * 89.99866 * 8 7 2 32 32 H 1.09002 * 109.47221 * 209.99908 * 8 7 2 33 33 H 1.09002 * 109.47229 * 330.00239 * 8 7 2 34 34 H 1.08999 * 109.47273 * 89.99313 * 14 13 11 35 35 H 1.09005 * 109.46931 * 209.99896 * 14 13 11 36 36 H 1.08996 * 109.46492 * 329.99443 * 14 13 11 37 37 H 1.09008 * 109.47509 * 210.00441 * 15 13 11 38 38 H 1.09002 * 109.47380 * 329.99978 * 15 13 11 39 39 H 0.97000 * 119.99957 * 180.02562 * 19 18 16 40 40 H 1.09003 * 110.74433 * 93.09541 * 24 9 5 41 41 H 1.08991 * 110.74721 * 216.25943 * 24 9 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1932 1.1970 0.0000 4 6 3.5856 1.2070 0.0005 5 6 4.2654 -0.0045 0.0083 6 6 3.5785 -1.1979 0.0034 7 6 2.1946 -1.1993 -0.0005 8 6 1.4398 -2.5036 -0.0058 9 6 5.7471 0.3174 0.0312 10 1 6.1913 0.1772 -0.9542 11 6 6.4628 -0.5134 1.0648 12 8 5.8429 -1.3084 1.7391 13 7 7.7918 -0.3739 1.2392 14 6 8.5408 0.5861 0.4244 15 6 8.4877 -1.1820 2.2437 16 6 8.9601 -2.4675 1.6149 17 1 8.7614 -2.6631 0.5716 18 6 9.6449 -3.3943 2.3718 19 7 9.8864 -3.1563 3.6425 20 14 10.2298 -4.9880 1.5926 21 1 11.1582 -4.6810 0.4750 22 1 10.9353 -5.8072 2.6107 23 1 9.0614 -5.7427 1.0724 24 6 5.7438 1.8124 0.4293 25 8 4.4513 2.2575 -0.0163 26 1 -0.3634 0.0000 -1.0276 27 1 -0.3633 -0.8900 0.5138 28 1 -0.3633 0.8899 0.5140 29 1 1.6484 2.1295 0.0004 30 1 4.1196 -2.1326 0.0028 31 1 1.2610 -2.8158 -1.0348 32 1 2.0265 -3.2651 0.5081 33 1 0.4858 -2.3735 0.5052 34 1 8.5574 1.5536 0.9261 35 1 9.5618 0.2292 0.2891 36 1 8.0602 0.6895 -0.5485 37 1 9.3452 -0.6278 2.6256 38 1 7.8064 -1.4076 3.0641 39 1 10.3685 -3.8081 4.1750 40 1 5.8396 1.9246 1.5093 41 1 6.5395 2.3508 -0.0854 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000184078228.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:26 Heat of formation + Delta-G solvation = -63.860872 kcal Electronic energy + Delta-G solvation = -23100.904419 eV Core-core repulsion = 19752.290722 eV Total energy + Delta-G solvation = -3348.613697 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 2.20 seconds Orbital eigenvalues (eV) -42.50281 -40.30394 -39.10860 -36.68292 -34.87180 -34.19197 -32.94807 -32.10857 -29.68574 -27.92991 -27.47474 -27.20161 -25.58110 -23.73181 -23.19439 -21.59561 -20.06330 -18.78146 -18.35837 -18.03662 -17.58197 -17.10871 -16.43345 -16.33227 -16.06632 -15.49868 -15.20649 -14.97218 -14.73009 -14.47411 -14.27383 -13.88067 -13.78977 -13.55231 -13.53575 -13.24712 -13.17336 -13.05919 -12.95102 -12.80727 -12.70571 -12.55273 -12.21168 -12.15036 -11.77697 -11.71373 -11.52990 -10.70993 -10.66849 -9.70662 -9.48519 -8.97054 -8.25263 -6.40343 0.25298 0.37938 1.34639 1.38726 1.46042 1.66386 2.13974 2.24243 2.38844 2.72988 3.04518 3.18862 3.48703 3.68991 3.84134 3.97087 3.98073 4.25305 4.27985 4.33664 4.39417 4.49918 4.55744 4.68002 4.73764 4.75383 4.80578 4.92518 4.94320 4.99111 5.03710 5.13417 5.18773 5.24050 5.32709 5.45101 5.51221 5.63817 5.72900 5.78817 6.02333 6.17941 6.63938 6.70708 7.23115 7.38701 8.81754 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.019538 B = 0.004413 C = 0.003787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1432.796965 B = 6343.063864 C = 7392.309395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.053 4.053 3 C -0.143 4.143 4 C 0.087 3.913 5 C -0.175 4.175 6 C -0.062 4.062 7 C -0.127 4.127 8 C -0.109 4.109 9 C -0.093 4.093 10 H 0.138 0.862 11 C 0.507 3.493 12 O -0.582 6.582 13 N -0.605 5.605 14 C 0.069 3.931 15 C 0.260 3.740 16 C -0.546 4.546 17 H 0.053 0.947 18 C 0.009 3.991 19 N -0.928 5.928 20 Si 0.967 3.033 21 H -0.259 1.259 22 H -0.277 1.277 23 H -0.279 1.279 24 C 0.072 3.928 25 O -0.304 6.304 26 H 0.090 0.910 27 H 0.082 0.918 28 H 0.080 0.920 29 H 0.150 0.850 30 H 0.102 0.898 31 H 0.083 0.917 32 H 0.052 0.948 33 H 0.091 0.909 34 H 0.079 0.921 35 H 0.071 0.929 36 H 0.093 0.907 37 H 0.028 0.972 38 H -0.004 1.004 39 H 0.268 0.732 40 H 0.070 0.930 41 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.420 10.556 -11.296 21.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.054 4.054 3 C -0.162 4.162 4 C 0.042 3.958 5 C -0.176 4.176 6 C -0.081 4.081 7 C -0.127 4.127 8 C -0.165 4.165 9 C -0.114 4.114 10 H 0.155 0.845 11 C 0.295 3.705 12 O -0.462 6.462 13 N -0.336 5.336 14 C -0.072 4.072 15 C 0.139 3.861 16 C -0.584 4.584 17 H 0.071 0.929 18 C -0.190 4.190 19 N -0.567 5.567 20 Si 0.791 3.209 21 H -0.183 1.183 22 H -0.202 1.202 23 H -0.205 1.205 24 C -0.003 4.003 25 O -0.218 6.218 26 H 0.108 0.892 27 H 0.101 0.899 28 H 0.099 0.901 29 H 0.168 0.832 30 H 0.120 0.880 31 H 0.102 0.898 32 H 0.071 0.929 33 H 0.109 0.891 34 H 0.097 0.903 35 H 0.089 0.911 36 H 0.112 0.888 37 H 0.046 0.954 38 H 0.014 0.986 39 H 0.077 0.923 40 H 0.088 0.912 41 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -14.637 10.325 -10.832 20.932 hybrid contribution 1.155 -1.302 0.279 1.762 sum -13.482 9.023 -10.553 19.353 Atomic orbital electron populations 1.20933 0.87732 1.04207 1.03868 1.19843 0.97934 0.90657 0.96926 1.20364 0.89044 0.99776 1.06986 1.19713 0.92242 0.85574 0.98282 1.20415 0.93812 0.94607 1.08797 1.20282 0.94215 0.96350 0.97214 1.19961 0.92304 0.96967 1.03459 1.20824 1.00157 0.92297 1.03197 1.21563 0.93000 0.96611 1.00229 0.84458 1.20617 0.82309 0.83290 0.84299 1.90650 1.67075 1.39166 1.49347 1.48150 1.07043 1.40066 1.38318 1.22106 0.97697 0.92005 0.95435 1.18771 0.90692 0.89768 0.86844 1.21665 1.36009 1.03932 0.96798 0.92901 1.25849 0.95935 1.01977 0.95252 1.70041 1.41511 1.37400 1.07763 0.85482 0.78379 0.78561 0.78488 1.18342 1.20241 1.20463 1.23982 0.84870 0.90341 1.01117 1.86783 1.20289 1.32493 1.82265 0.89193 0.89907 0.90125 0.83181 0.88025 0.89809 0.92909 0.89061 0.90272 0.91050 0.88845 0.95420 0.98581 0.92341 0.91190 0.82517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.61 9.59 71.24 0.68 -0.93 16 2 C -0.05 -1.26 5.87 -19.93 -0.12 -1.38 16 3 C -0.14 -3.64 9.71 22.45 0.22 -3.42 16 4 C 0.09 2.63 7.03 22.68 0.16 2.79 16 5 C -0.18 -5.99 5.39 -19.53 -0.11 -6.09 16 6 C -0.06 -2.17 8.73 22.18 0.19 -1.98 16 7 C -0.13 -3.52 5.89 -19.83 -0.12 -3.64 16 8 C -0.11 -2.32 9.61 71.24 0.68 -1.64 16 9 C -0.09 -2.94 2.53 -11.40 -0.03 -2.97 16 10 H 0.14 3.62 7.25 -2.39 -0.02 3.60 16 11 C 0.51 21.76 6.95 87.66 0.61 22.37 16 12 O -0.58 -31.25 14.76 -3.03 -0.04 -31.30 16 13 N -0.60 -25.50 2.86 -851.13 -2.43 -27.93 16 14 C 0.07 1.95 9.18 127.77 1.17 3.12 16 15 C 0.26 14.11 5.16 85.63 0.44 14.55 16 16 C -0.55 -31.60 9.39 25.60 0.24 -31.36 16 17 H 0.05 3.02 7.81 -2.91 -0.02 3.00 16 18 C 0.01 0.53 5.46 84.65 0.46 0.99 16 19 N -0.93 -56.34 13.29 21.45 0.28 -56.06 16 20 Si 0.97 45.02 29.54 68.60 2.03 47.05 16 21 H -0.26 -11.27 7.11 99.48 0.71 -10.56 16 22 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 23 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 24 C 0.07 1.80 6.59 72.57 0.48 2.28 16 25 O -0.30 -8.47 11.11 -95.07 -1.06 -9.53 16 26 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 27 H 0.08 1.05 5.94 -2.39 -0.01 1.04 16 28 H 0.08 0.96 8.08 -2.39 -0.02 0.94 16 29 H 0.15 2.96 8.06 -2.91 -0.02 2.94 16 30 H 0.10 3.96 7.82 -2.91 -0.02 3.93 16 31 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 32 H 0.05 1.27 8.09 -2.39 -0.02 1.25 16 33 H 0.09 1.50 5.94 -2.39 -0.01 1.48 16 34 H 0.08 1.74 8.12 -2.39 -0.02 1.72 16 35 H 0.07 2.12 8.07 -2.38 -0.02 2.10 16 36 H 0.09 1.96 6.11 -2.39 -0.01 1.94 16 37 H 0.03 1.51 8.07 -2.38 -0.02 1.49 16 38 H 0.00 -0.25 7.42 -2.39 -0.02 -0.27 16 39 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 40 H 0.07 1.91 7.91 -2.39 -0.02 1.89 16 41 H 0.16 2.49 7.54 -2.39 -0.02 2.47 16 Total: -1.00 -78.01 336.78 4.79 -73.22 By element: Atomic # 1 Polarization: 10.83 SS G_CDS: 1.03 Total: 11.86 kcal Atomic # 6 Polarization: -12.29 SS G_CDS: 4.98 Total: -7.31 kcal Atomic # 7 Polarization: -81.85 SS G_CDS: -2.15 Total: -83.99 kcal Atomic # 8 Polarization: -39.72 SS G_CDS: -1.10 Total: -40.82 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 2.03 Total: 47.05 kcal Total: -78.01 4.79 -73.22 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184078228.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.360 kcal (2) G-P(sol) polarization free energy of solvation -78.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.21 seconds