Wall clock time and date at job start Tue Mar 31 2020 05:44:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.37968 * 119.82537 * 2 1 4 4 C 1.39244 * 120.23916 * 179.97438 * 3 2 1 5 5 C 1.38922 * 118.87433 * 359.65267 * 4 3 2 6 6 C 1.37689 * 120.79106 * 0.54095 * 5 4 3 7 7 C 1.38251 * 119.81954 * 179.97438 * 2 1 3 8 8 C 1.50699 * 120.11709 * 0.17592 * 7 2 1 9 9 C 1.51642 * 107.02674 * 180.56311 * 5 4 3 10 10 H 1.09007 * 110.97392 * 133.86554 * 9 5 4 11 11 C 1.50693 * 110.94496 * 257.54186 * 9 5 4 12 12 O 1.21281 * 120.00095 * 353.97741 * 11 9 5 13 13 N 1.34780 * 120.00182 * 173.97402 * 11 9 5 14 14 C 1.46500 * 119.99910 * 180.02562 * 13 11 9 15 15 H 1.09002 * 109.47129 * 324.99754 * 14 13 11 16 16 C 1.52997 * 109.47473 * 85.00011 * 14 13 11 17 17 C 1.50708 * 109.47008 * 205.00179 * 14 13 11 18 18 H 1.08000 * 119.99723 * 359.97438 * 17 14 13 19 19 C 1.37873 * 119.99930 * 179.97438 * 17 14 13 20 20 N 1.31509 * 120.00195 * 0.02562 * 19 17 14 21 21 Si 1.86803 * 119.99968 * 179.97438 * 19 17 14 22 22 H 1.48500 * 109.46959 * 89.99935 * 21 19 17 23 23 H 1.48491 * 109.47193 * 210.00326 * 21 19 17 24 24 H 1.48498 * 109.47096 * 330.00479 * 21 19 17 25 25 C 1.54708 * 101.90845 * 15.70082 * 9 5 4 26 26 O 1.36136 * 129.88430 * 179.59271 * 4 3 2 27 27 H 1.08999 * 109.47083 * 89.99993 * 1 2 3 28 28 H 1.09003 * 109.47483 * 210.00284 * 1 2 3 29 29 H 1.09001 * 109.47140 * 329.99902 * 1 2 3 30 30 H 1.08005 * 119.88325 * 359.97438 * 3 2 1 31 31 H 1.07996 * 120.01521 * 179.61824 * 6 5 4 32 32 H 1.08997 * 109.46761 * 90.00311 * 8 7 2 33 33 H 1.09000 * 109.46800 * 209.99992 * 8 7 2 34 34 H 1.08996 * 109.47079 * 329.99838 * 8 7 2 35 35 H 0.96994 * 120.00115 * 0.02562 * 13 11 9 36 36 H 1.09002 * 109.47153 * 59.99757 * 16 14 13 37 37 H 1.09001 * 109.46832 * 299.99948 * 16 14 13 38 38 H 1.09004 * 109.47261 * 179.97438 * 16 14 13 39 39 H 0.97006 * 120.00358 * 179.97438 * 20 19 17 40 40 H 1.08998 * 110.74790 * 92.96167 * 25 9 5 41 41 H 1.09004 * 110.74620 * 216.30603 * 25 9 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1932 1.1969 0.0000 4 6 3.5856 1.2070 0.0005 5 6 4.2652 -0.0046 0.0084 6 6 3.5785 -1.1980 0.0045 7 6 2.1945 -1.1995 0.0005 8 6 1.4395 -2.5037 -0.0029 9 6 5.7470 0.3175 0.0213 10 1 6.2714 -0.2878 0.7608 11 6 6.3502 0.1332 -1.3473 12 8 5.6828 -0.3325 -2.2465 13 7 7.6314 0.4860 -1.5721 14 6 8.2176 0.3073 -2.9028 15 1 7.8092 -0.5930 -3.3619 16 6 7.8846 1.5201 -3.7739 17 6 9.7136 0.1735 -2.7788 18 1 10.1809 0.2176 -1.8061 19 6 10.4856 -0.0052 -3.9071 20 7 9.9166 -0.0584 -5.0915 21 14 12.3400 -0.1704 -3.7535 22 1 12.6971 -1.6019 -3.5848 23 1 12.9874 0.3602 -4.9800 24 1 12.8094 0.5992 -2.5734 25 6 5.7457 1.8099 0.4288 26 8 4.4510 2.2579 -0.0068 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3634 -0.8900 0.5139 29 1 -0.3633 0.8900 0.5138 30 1 1.6484 2.1295 -0.0004 31 1 4.1195 -2.1327 0.0045 32 1 1.2604 -2.8170 -1.0314 33 1 2.0265 -3.2645 0.5117 34 1 0.4860 -2.3729 0.5086 35 1 8.1653 0.8581 -0.8529 36 1 8.2930 2.4204 -3.3148 37 1 6.8025 1.6169 -3.8636 38 1 8.3211 1.3874 -4.7639 39 1 10.4598 -0.1838 -5.8854 40 1 5.8477 1.9154 1.5088 41 1 6.5364 2.3524 -0.0896 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000184341205.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:51 Heat of formation + Delta-G solvation = -52.886020 kcal Electronic energy + Delta-G solvation = -22908.378024 eV Core-core repulsion = 19560.240232 eV Total energy + Delta-G solvation = -3348.137792 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 1.85 seconds Orbital eigenvalues (eV) -41.32047 -38.66128 -37.95263 -34.84321 -33.16873 -32.49643 -31.93798 -30.99446 -28.69852 -26.93956 -26.31007 -25.27105 -23.62114 -22.28474 -21.10551 -20.32367 -19.39941 -17.63426 -16.93707 -16.35363 -16.00853 -15.59011 -15.10197 -14.94037 -14.39460 -14.19986 -13.98449 -13.85495 -13.61144 -12.99299 -12.83738 -12.71204 -12.38990 -12.33719 -12.06378 -11.99229 -11.82497 -11.47647 -11.33928 -11.09732 -10.98222 -10.80772 -10.72878 -10.56601 -10.31212 -10.25106 -9.13275 -9.06852 -8.63387 -8.56825 -7.95513 -7.86175 -6.14043 -4.23895 1.33549 1.47463 3.14334 3.23026 3.29612 3.31298 3.43664 3.62455 4.12357 4.35296 4.37376 4.61492 4.83125 4.88990 5.03880 5.08657 5.18260 5.20631 5.25975 5.42688 5.43769 5.56326 5.62495 5.63783 5.70216 5.76295 5.80357 5.95628 6.18868 6.33668 6.51173 6.63036 6.73258 6.81477 6.96288 7.13848 7.26587 7.42589 7.53395 7.66914 7.89348 8.13044 8.61335 8.75347 9.07491 9.43699 10.91879 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.029454 B = 0.003595 C = 0.003458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 950.421148 B = 7787.298068 C = 8094.746146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.055 4.055 3 C -0.140 4.140 4 C 0.110 3.890 5 C -0.141 4.141 6 C -0.047 4.047 7 C -0.120 4.120 8 C -0.108 4.108 9 C -0.106 4.106 10 H 0.118 0.882 11 C 0.511 3.489 12 O -0.538 6.538 13 N -0.708 5.708 14 C 0.265 3.735 15 H 0.048 0.952 16 C -0.147 4.147 17 C -0.535 4.535 18 H 0.061 0.939 19 C 0.066 3.934 20 N -0.883 5.883 21 Si 0.902 3.098 22 H -0.280 1.280 23 H -0.285 1.285 24 H -0.273 1.273 25 C 0.063 3.937 26 O -0.301 6.301 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.065 0.935 30 H 0.125 0.875 31 H 0.123 0.877 32 H 0.068 0.932 33 H 0.063 0.937 34 H 0.067 0.933 35 H 0.388 0.612 36 H 0.026 0.974 37 H 0.014 0.986 38 H 0.090 0.910 39 H 0.265 0.735 40 H 0.085 0.915 41 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.993 0.407 13.702 19.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.055 4.055 3 C -0.159 4.159 4 C 0.065 3.935 5 C -0.142 4.142 6 C -0.065 4.065 7 C -0.120 4.120 8 C -0.165 4.165 9 C -0.128 4.128 10 H 0.136 0.864 11 C 0.295 3.705 12 O -0.415 6.415 13 N -0.356 5.356 14 C 0.164 3.836 15 H 0.066 0.934 16 C -0.206 4.206 17 C -0.573 4.573 18 H 0.079 0.921 19 C -0.137 4.137 20 N -0.520 5.520 21 Si 0.730 3.270 22 H -0.206 1.206 23 H -0.211 1.211 24 H -0.198 1.198 25 C -0.013 4.013 26 O -0.215 6.215 27 H 0.091 0.909 28 H 0.090 0.910 29 H 0.084 0.916 30 H 0.143 0.857 31 H 0.141 0.859 32 H 0.087 0.913 33 H 0.082 0.918 34 H 0.086 0.914 35 H 0.220 0.780 36 H 0.046 0.954 37 H 0.033 0.967 38 H 0.109 0.891 39 H 0.075 0.925 40 H 0.103 0.897 41 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -14.428 0.285 12.750 19.256 hybrid contribution 1.665 0.043 0.308 1.693 sum -12.763 0.327 13.058 18.262 Atomic orbital electron populations 1.20840 0.90888 1.02753 1.02543 1.19355 0.95763 0.91617 0.98796 1.19960 0.89685 0.98390 1.07830 1.19494 0.91373 0.86143 0.96534 1.20151 0.93199 0.93968 1.06879 1.20103 0.92974 0.96598 0.96856 1.19540 0.93043 0.94960 1.04476 1.20748 0.99623 0.93813 1.02305 1.21664 0.94380 0.98132 0.98607 0.86409 1.19913 0.82874 0.79248 0.88501 1.90680 1.60890 1.44888 1.45047 1.46516 1.10807 1.62755 1.15553 1.18755 0.92312 0.95415 0.77125 0.93397 1.22076 0.97040 0.97819 1.03629 1.21207 0.90791 1.51751 0.93576 0.92050 1.24894 0.99065 0.94687 0.95066 1.69905 1.35655 1.48491 0.97948 0.86438 0.84590 0.78354 0.77653 1.20556 1.21053 1.19830 1.23840 0.84602 0.92312 1.00507 1.86818 1.19802 1.32338 1.82518 0.90942 0.90991 0.91615 0.85669 0.85885 0.91288 0.91802 0.91416 0.78016 0.95449 0.96655 0.89116 0.92536 0.89655 0.87036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.00 9.59 36.01 0.35 -0.65 16 2 C -0.06 -0.69 5.87 -104.72 -0.61 -1.31 16 3 C -0.14 -1.96 9.71 -39.31 -0.38 -2.34 16 4 C 0.11 1.77 7.04 -38.95 -0.27 1.50 16 5 C -0.14 -2.28 4.94 -104.10 -0.51 -2.79 16 6 C -0.05 -0.70 9.70 -39.72 -0.39 -1.09 16 7 C -0.12 -1.56 5.89 -104.56 -0.62 -2.18 16 8 C -0.11 -1.05 9.61 36.00 0.35 -0.71 16 9 C -0.11 -1.63 3.52 -91.56 -0.32 -1.95 16 10 H 0.12 1.45 8.14 -51.93 -0.42 1.03 16 11 C 0.51 10.45 7.12 -10.99 -0.08 10.37 16 12 O -0.54 -13.44 15.81 5.56 0.09 -13.35 16 13 N -0.71 -14.65 4.80 -54.93 -0.26 -14.92 16 14 C 0.27 6.80 2.56 -69.08 -0.18 6.62 16 15 H 0.05 1.42 7.58 -51.93 -0.39 1.03 16 16 C -0.15 -3.73 9.26 37.16 0.34 -3.39 16 17 C -0.53 -14.11 8.73 -34.44 -0.30 -14.41 16 18 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16 19 C 0.07 1.78 5.30 -17.82 -0.09 1.69 16 20 N -0.88 -24.97 11.32 55.43 0.63 -24.34 16 21 Si 0.90 20.55 29.54 -169.99 -5.02 15.52 16 22 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 23 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 24 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 25 C 0.06 0.83 7.53 38.06 0.29 1.12 16 26 O -0.30 -4.88 11.10 -20.17 -0.22 -5.10 16 27 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.07 0.52 5.94 -51.93 -0.31 0.21 16 29 H 0.06 0.50 8.08 -51.93 -0.42 0.08 16 30 H 0.13 1.50 8.06 -52.48 -0.42 1.08 16 31 H 0.12 1.71 8.06 -52.49 -0.42 1.28 16 32 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 33 H 0.06 0.56 8.09 -51.93 -0.42 0.14 16 34 H 0.07 0.52 5.94 -51.93 -0.31 0.22 16 35 H 0.39 6.72 8.36 -40.82 -0.34 6.38 16 36 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 37 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.09 2.49 6.07 -51.93 -0.32 2.18 16 39 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 40 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 41 H 0.11 1.42 7.54 -51.93 -0.39 1.03 16 LS Contribution 338.86 15.07 5.11 5.11 Total: -1.00 -32.81 338.86 -7.94 -40.76 By element: Atomic # 1 Polarization: 11.67 SS G_CDS: -5.82 Total: 5.85 kcal Atomic # 6 Polarization: -7.09 SS G_CDS: -2.44 Total: -9.52 kcal Atomic # 7 Polarization: -39.62 SS G_CDS: 0.36 Total: -39.26 kcal Atomic # 8 Polarization: -18.32 SS G_CDS: -0.14 Total: -18.46 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.52 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -32.81 -7.94 -40.76 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184341205.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.130 kcal (2) G-P(sol) polarization free energy of solvation -32.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.86 seconds