Wall clock time and date at job start Tue Mar 31 2020 05:44:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.37968 * 119.82537 * 2 1 4 4 C 1.39244 * 120.23916 * 179.97438 * 3 2 1 5 5 C 1.38922 * 118.87433 * 359.65267 * 4 3 2 6 6 C 1.37689 * 120.79106 * 0.54095 * 5 4 3 7 7 C 1.38251 * 119.81954 * 179.97438 * 2 1 3 8 8 C 1.50699 * 120.11709 * 0.17592 * 7 2 1 9 9 C 1.51642 * 107.02674 * 180.56311 * 5 4 3 10 10 H 1.09007 * 110.97392 * 133.86554 * 9 5 4 11 11 C 1.50693 * 110.94496 * 257.54186 * 9 5 4 12 12 O 1.21281 * 120.00095 * 353.97741 * 11 9 5 13 13 N 1.34780 * 120.00182 * 173.97402 * 11 9 5 14 14 C 1.46500 * 119.99910 * 180.02562 * 13 11 9 15 15 H 1.09002 * 109.47129 * 324.99754 * 14 13 11 16 16 C 1.52997 * 109.47473 * 85.00011 * 14 13 11 17 17 C 1.50708 * 109.47008 * 205.00179 * 14 13 11 18 18 H 1.08000 * 119.99723 * 359.97438 * 17 14 13 19 19 C 1.37873 * 119.99930 * 179.97438 * 17 14 13 20 20 N 1.31509 * 120.00195 * 0.02562 * 19 17 14 21 21 Si 1.86803 * 119.99968 * 179.97438 * 19 17 14 22 22 H 1.48500 * 109.46959 * 89.99935 * 21 19 17 23 23 H 1.48491 * 109.47193 * 210.00326 * 21 19 17 24 24 H 1.48498 * 109.47096 * 330.00479 * 21 19 17 25 25 C 1.54708 * 101.90845 * 15.70082 * 9 5 4 26 26 O 1.36136 * 129.88430 * 179.59271 * 4 3 2 27 27 H 1.08999 * 109.47083 * 89.99993 * 1 2 3 28 28 H 1.09003 * 109.47483 * 210.00284 * 1 2 3 29 29 H 1.09001 * 109.47140 * 329.99902 * 1 2 3 30 30 H 1.08005 * 119.88325 * 359.97438 * 3 2 1 31 31 H 1.07996 * 120.01521 * 179.61824 * 6 5 4 32 32 H 1.08997 * 109.46761 * 90.00311 * 8 7 2 33 33 H 1.09000 * 109.46800 * 209.99992 * 8 7 2 34 34 H 1.08996 * 109.47079 * 329.99838 * 8 7 2 35 35 H 0.96994 * 120.00115 * 0.02562 * 13 11 9 36 36 H 1.09002 * 109.47153 * 59.99757 * 16 14 13 37 37 H 1.09001 * 109.46832 * 299.99948 * 16 14 13 38 38 H 1.09004 * 109.47261 * 179.97438 * 16 14 13 39 39 H 0.97006 * 120.00358 * 179.97438 * 20 19 17 40 40 H 1.08998 * 110.74790 * 92.96167 * 25 9 5 41 41 H 1.09004 * 110.74620 * 216.30603 * 25 9 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1932 1.1969 0.0000 4 6 3.5856 1.2070 0.0005 5 6 4.2652 -0.0046 0.0084 6 6 3.5785 -1.1980 0.0045 7 6 2.1945 -1.1995 0.0005 8 6 1.4395 -2.5037 -0.0029 9 6 5.7470 0.3175 0.0213 10 1 6.2714 -0.2878 0.7608 11 6 6.3502 0.1332 -1.3473 12 8 5.6828 -0.3325 -2.2465 13 7 7.6314 0.4860 -1.5721 14 6 8.2176 0.3073 -2.9028 15 1 7.8092 -0.5930 -3.3619 16 6 7.8846 1.5201 -3.7739 17 6 9.7136 0.1735 -2.7788 18 1 10.1809 0.2176 -1.8061 19 6 10.4856 -0.0052 -3.9071 20 7 9.9166 -0.0584 -5.0915 21 14 12.3400 -0.1704 -3.7535 22 1 12.6971 -1.6019 -3.5848 23 1 12.9874 0.3602 -4.9800 24 1 12.8094 0.5992 -2.5734 25 6 5.7457 1.8099 0.4288 26 8 4.4510 2.2579 -0.0068 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3634 -0.8900 0.5139 29 1 -0.3633 0.8900 0.5138 30 1 1.6484 2.1295 -0.0004 31 1 4.1195 -2.1327 0.0045 32 1 1.2604 -2.8170 -1.0314 33 1 2.0265 -3.2645 0.5117 34 1 0.4860 -2.3729 0.5086 35 1 8.1653 0.8581 -0.8529 36 1 8.2930 2.4204 -3.3148 37 1 6.8025 1.6169 -3.8636 38 1 8.3211 1.3874 -4.7639 39 1 10.4598 -0.1838 -5.8854 40 1 5.8477 1.9154 1.5088 41 1 6.5364 2.3524 -0.0896 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000184341205.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:46 Heat of formation + Delta-G solvation = -73.981657 kcal Electronic energy + Delta-G solvation = -22909.292800 eV Core-core repulsion = 19560.240232 eV Total energy + Delta-G solvation = -3349.052568 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 5.49 seconds Orbital eigenvalues (eV) -42.48659 -40.21648 -39.06774 -36.77207 -34.50958 -34.19185 -32.93643 -32.21667 -30.49056 -27.88274 -27.37440 -27.23840 -24.97629 -23.36894 -22.73359 -21.48950 -21.11846 -19.20892 -18.03457 -17.90183 -17.29524 -17.21293 -16.77688 -16.14484 -15.78038 -15.56434 -15.17782 -14.97864 -14.68116 -14.65395 -14.42761 -13.81291 -13.66665 -13.55586 -13.22858 -13.05822 -13.01310 -12.92306 -12.85249 -12.75589 -12.58378 -12.29631 -12.15226 -12.13904 -11.86245 -11.61636 -11.14920 -10.78244 -10.60362 -9.82707 -9.70866 -8.94249 -8.19287 -6.37654 0.26150 0.39322 1.44623 1.45188 1.56099 1.65744 2.27228 2.28544 2.46431 2.81559 3.11252 3.19346 3.52162 3.82221 3.93700 3.98823 4.10990 4.29828 4.34690 4.35947 4.53088 4.55564 4.70386 4.73513 4.76342 4.80922 4.87025 4.96055 5.04449 5.05756 5.16058 5.24947 5.33808 5.39289 5.42719 5.56904 5.63469 5.65704 5.75093 5.86037 6.05624 6.20650 6.69907 6.88884 7.29448 7.48832 8.87210 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.029454 B = 0.003595 C = 0.003458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 950.421148 B = 7787.298068 C = 8094.746146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.055 4.055 3 C -0.151 4.151 4 C 0.085 3.915 5 C -0.167 4.167 6 C -0.067 4.067 7 C -0.126 4.126 8 C -0.107 4.107 9 C -0.096 4.096 10 H 0.151 0.849 11 C 0.507 3.493 12 O -0.591 6.591 13 N -0.700 5.700 14 C 0.272 3.728 15 H -0.004 1.004 16 C -0.133 4.133 17 C -0.546 4.546 18 H 0.078 0.922 19 C 0.013 3.987 20 N -0.919 5.919 21 Si 0.975 3.025 22 H -0.278 1.278 23 H -0.285 1.285 24 H -0.257 1.257 25 C 0.064 3.936 26 O -0.322 6.322 27 H 0.078 0.922 28 H 0.091 0.909 29 H 0.080 0.920 30 H 0.141 0.859 31 H 0.124 0.876 32 H 0.069 0.931 33 H 0.071 0.929 34 H 0.092 0.908 35 H 0.407 0.593 36 H 0.043 0.957 37 H 0.005 0.995 38 H 0.067 0.933 39 H 0.265 0.735 40 H 0.128 0.872 41 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.186 0.618 16.032 21.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.056 4.056 3 C -0.170 4.170 4 C 0.040 3.960 5 C -0.169 4.169 6 C -0.085 4.085 7 C -0.126 4.126 8 C -0.163 4.163 9 C -0.118 4.118 10 H 0.168 0.832 11 C 0.294 3.706 12 O -0.472 6.472 13 N -0.350 5.350 14 C 0.169 3.831 15 H 0.014 0.986 16 C -0.192 4.192 17 C -0.584 4.584 18 H 0.096 0.904 19 C -0.187 4.187 20 N -0.557 5.557 21 Si 0.799 3.201 22 H -0.203 1.203 23 H -0.211 1.211 24 H -0.181 1.181 25 C -0.011 4.011 26 O -0.237 6.237 27 H 0.097 0.903 28 H 0.110 0.890 29 H 0.099 0.901 30 H 0.159 0.841 31 H 0.142 0.858 32 H 0.087 0.913 33 H 0.090 0.910 34 H 0.111 0.889 35 H 0.243 0.757 36 H 0.062 0.938 37 H 0.024 0.976 38 H 0.086 0.914 39 H 0.075 0.925 40 H 0.146 0.854 41 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -14.615 0.514 15.135 21.046 hybrid contribution 1.619 -0.058 -0.440 1.679 sum -12.996 0.456 14.695 19.623 Atomic orbital electron populations 1.20931 0.87973 1.04511 1.03399 1.19843 0.97849 0.90864 0.97006 1.20355 0.89271 0.99806 1.07528 1.19821 0.92275 0.86088 0.97803 1.20355 0.93563 0.94561 1.08377 1.20374 0.94188 0.96428 0.97553 1.19988 0.92639 0.96752 1.03204 1.20821 1.00496 0.92249 1.02770 1.21643 0.94172 1.00512 0.95432 0.83152 1.20843 0.82112 0.77468 0.90210 1.90648 1.62029 1.47027 1.47461 1.46225 1.11404 1.62939 1.14412 1.18338 0.92443 0.93157 0.79197 0.98647 1.21897 0.96129 0.98515 1.02633 1.21543 0.91003 1.51532 0.94371 0.90442 1.25846 1.04097 0.94152 0.94624 1.70064 1.37527 1.49346 0.98804 0.85300 0.78391 0.78363 0.78015 1.20342 1.21082 1.18091 1.24093 0.83658 0.90321 1.02996 1.86766 1.20827 1.32917 1.83148 0.90328 0.89047 0.90135 0.84133 0.85809 0.91261 0.91039 0.88934 0.75740 0.93820 0.97632 0.91437 0.92541 0.85396 0.86803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.65 9.59 71.24 0.68 -0.97 16 2 C -0.06 -1.30 5.87 -19.93 -0.12 -1.42 16 3 C -0.15 -4.11 9.71 22.45 0.22 -3.89 16 4 C 0.08 2.72 7.04 22.68 0.16 2.88 16 5 C -0.17 -5.40 4.94 -19.53 -0.10 -5.49 16 6 C -0.07 -2.01 9.70 22.18 0.22 -1.79 16 7 C -0.13 -3.14 5.89 -19.82 -0.12 -3.25 16 8 C -0.11 -1.87 9.61 71.24 0.68 -1.18 16 9 C -0.10 -2.88 3.52 -11.41 -0.04 -2.92 16 10 H 0.15 3.41 8.14 -2.38 -0.02 3.39 16 11 C 0.51 21.10 7.12 87.65 0.62 21.72 16 12 O -0.59 -30.93 15.81 -3.03 -0.05 -30.97 16 13 N -0.70 -29.15 4.80 -446.09 -2.14 -31.29 16 14 C 0.27 14.34 2.56 44.25 0.11 14.45 16 15 H 0.00 -0.28 7.58 -2.39 -0.02 -0.29 16 16 C -0.13 -6.96 9.26 71.98 0.67 -6.29 16 17 C -0.55 -28.82 8.73 25.60 0.22 -28.59 16 18 H 0.08 3.75 7.74 -2.91 -0.02 3.72 16 19 C 0.01 0.69 5.30 84.65 0.45 1.14 16 20 N -0.92 -53.24 11.32 21.44 0.24 -53.00 16 21 Si 0.97 41.76 29.54 68.60 2.03 43.79 16 22 H -0.28 -11.74 7.11 99.48 0.71 -11.04 16 23 H -0.29 -12.14 7.11 99.48 0.71 -11.44 16 24 H -0.26 -10.27 7.11 99.48 0.71 -9.56 16 25 C 0.06 1.58 7.53 72.56 0.55 2.13 16 26 O -0.32 -10.27 11.10 -95.09 -1.06 -11.33 16 27 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 28 H 0.09 0.99 5.94 -2.39 -0.01 0.98 16 29 H 0.08 0.97 8.08 -2.39 -0.02 0.95 16 30 H 0.14 3.21 8.06 -2.91 -0.02 3.19 16 31 H 0.12 3.50 8.06 -2.91 -0.02 3.47 16 32 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.07 1.13 8.09 -2.39 -0.02 1.11 16 34 H 0.09 1.13 5.94 -2.39 -0.01 1.12 16 35 H 0.41 13.63 8.36 -92.71 -0.78 12.86 16 36 H 0.04 2.07 8.14 -2.39 -0.02 2.05 16 37 H 0.00 0.25 8.14 -2.39 -0.02 0.23 16 38 H 0.07 3.85 6.07 -2.38 -0.01 3.83 16 39 H 0.27 14.54 8.31 -92.70 -0.77 13.77 16 40 H 0.13 2.09 8.14 -2.39 -0.02 2.07 16 41 H 0.11 2.71 7.54 -2.39 -0.02 2.69 16 Total: -1.00 -74.39 338.86 3.51 -70.88 By element: Atomic # 1 Polarization: 25.14 SS G_CDS: 0.27 Total: 25.42 kcal Atomic # 6 Polarization: -17.70 SS G_CDS: 4.21 Total: -13.49 kcal Atomic # 7 Polarization: -82.39 SS G_CDS: -1.90 Total: -84.29 kcal Atomic # 8 Polarization: -41.20 SS G_CDS: -1.10 Total: -42.30 kcal Atomic # 14 Polarization: 41.76 SS G_CDS: 2.03 Total: 43.79 kcal Total: -74.39 3.51 -70.88 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184341205.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.105 kcal (2) G-P(sol) polarization free energy of solvation -74.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.877 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.50 seconds