Wall clock time and date at job start Tue Mar 31 2020 05:45:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.37979 * 119.81957 * 2 1 4 4 C 1.39246 * 120.23605 * 180.09657 * 3 2 1 5 5 C 1.38918 * 118.87430 * 0.12865 * 4 3 2 6 6 C 1.37693 * 120.79260 * 359.64991 * 5 4 3 7 7 C 1.38237 * 119.82476 * 179.72356 * 2 1 3 8 8 C 1.50700 * 120.12144 * 359.87037 * 7 2 1 9 9 C 1.51651 * 107.02998 * 179.45853 * 5 4 3 10 10 H 1.09000 * 110.93759 * 226.34293 * 9 5 4 11 11 C 1.50695 * 110.94116 * 102.65867 * 9 5 4 12 12 O 1.21280 * 120.00210 * 6.00762 * 11 9 5 13 13 N 1.34779 * 120.00083 * 186.01477 * 11 9 5 14 14 C 1.46502 * 119.99914 * 180.02562 * 13 11 9 15 15 H 1.08998 * 109.46895 * 34.99385 * 14 13 11 16 16 C 1.53003 * 109.46476 * 274.99497 * 14 13 11 17 17 C 1.50696 * 109.46991 * 155.00079 * 14 13 11 18 18 H 1.08002 * 119.99994 * 359.97438 * 17 14 13 19 19 C 1.37878 * 119.99867 * 180.02562 * 17 14 13 20 20 N 1.31509 * 119.99961 * 359.97438 * 19 17 14 21 21 Si 1.86801 * 119.99758 * 179.97438 * 19 17 14 22 22 H 1.48496 * 109.47265 * 359.97438 * 21 19 17 23 23 H 1.48502 * 109.47163 * 119.99760 * 21 19 17 24 24 H 1.48504 * 109.46745 * 239.99435 * 21 19 17 25 25 C 1.54704 * 101.91936 * 344.49991 * 9 5 4 26 26 O 1.36133 * 129.88737 * 180.56844 * 4 3 2 27 27 H 1.08999 * 109.47015 * 90.00482 * 1 2 3 28 28 H 1.09000 * 109.46646 * 209.99634 * 1 2 3 29 29 H 1.09000 * 109.47248 * 330.00352 * 1 2 3 30 30 H 1.07997 * 119.87905 * 0.06951 * 3 2 1 31 31 H 1.08000 * 120.01598 * 180.27792 * 6 5 4 32 32 H 1.09002 * 109.47128 * 89.99698 * 8 7 2 33 33 H 1.08996 * 109.47337 * 210.00055 * 8 7 2 34 34 H 1.09004 * 109.46558 * 330.00200 * 8 7 2 35 35 H 0.97002 * 119.99532 * 359.97438 * 13 11 9 36 36 H 1.08994 * 109.47651 * 300.00014 * 16 14 13 37 37 H 1.09000 * 109.47185 * 60.00509 * 16 14 13 38 38 H 1.09009 * 109.46808 * 180.02562 * 16 14 13 39 39 H 0.97007 * 119.99895 * 180.02562 * 20 19 17 40 40 H 1.09001 * 110.74841 * 266.99316 * 25 9 5 41 41 H 1.08998 * 110.90538 * 143.71983 * 25 9 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1932 1.1971 0.0000 4 6 3.5856 1.2072 -0.0020 5 6 4.2653 -0.0043 -0.0068 6 6 3.5786 -1.1978 -0.0022 7 6 2.1946 -1.1993 0.0058 8 6 1.4399 -2.5036 0.0150 9 6 5.7471 0.3177 -0.0217 10 1 6.2698 -0.2875 -0.7624 11 6 6.3522 0.1328 1.3460 12 8 5.6860 -0.3330 2.2460 13 7 7.6339 0.4852 1.5691 14 6 8.2223 0.3050 2.8986 15 1 7.8144 -0.5957 3.3573 16 6 7.8907 1.5170 3.7715 17 6 9.7180 0.1712 2.7720 18 1 10.1836 0.2156 1.7985 19 6 10.4918 -0.0089 3.8988 20 7 9.9247 -0.0634 5.0841 21 14 12.3458 -0.1754 3.7418 22 1 12.7318 -0.0810 2.3110 23 1 13.0070 0.9127 4.5062 24 1 12.7722 -1.4907 4.2834 25 6 5.7456 1.8103 -0.4285 26 8 4.4510 2.2580 0.0080 27 1 -0.3633 -0.0001 -1.0277 28 1 -0.3632 -0.8900 0.5138 29 1 -0.3634 0.8900 0.5138 30 1 1.6483 2.1295 0.0011 31 1 4.1197 -2.1325 -0.0014 32 1 1.2558 -2.8242 -1.0104 33 1 2.0292 -3.2608 0.5322 34 1 0.4886 -2.3692 0.5299 35 1 8.1668 0.8575 0.8492 36 1 8.2985 2.4177 3.3128 37 1 6.8089 1.6137 3.8631 38 1 8.3289 1.3831 4.7607 39 1 10.4692 -0.1898 5.8769 40 1 5.8469 1.9162 -1.5086 41 1 6.5366 2.3548 0.0872 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000184341266.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:12 Heat of formation + Delta-G solvation = -52.875717 kcal Electronic energy + Delta-G solvation = -22907.919272 eV Core-core repulsion = 19559.781927 eV Total energy + Delta-G solvation = -3348.137345 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 1.95 seconds Orbital eigenvalues (eV) -41.32012 -38.66073 -37.95313 -34.84306 -33.16851 -32.49607 -31.93759 -30.99386 -28.69841 -26.93968 -26.31062 -25.27227 -23.62215 -22.28542 -21.10610 -20.32372 -19.39840 -17.63473 -16.93427 -16.35475 -16.01160 -15.59034 -15.11286 -14.94321 -14.26989 -14.25692 -14.07224 -13.87630 -13.56171 -12.97387 -12.87832 -12.68944 -12.37491 -12.31318 -12.08646 -12.01379 -11.83030 -11.47801 -11.33466 -11.11036 -10.96337 -10.80633 -10.72693 -10.55678 -10.30831 -10.25697 -9.13098 -9.05688 -8.63525 -8.57485 -7.95380 -7.86504 -6.14275 -4.23974 1.33467 1.47264 3.14512 3.22087 3.29750 3.32224 3.43825 3.62005 4.12315 4.35280 4.37323 4.61483 4.83061 4.89192 5.04689 5.08716 5.18152 5.21918 5.26060 5.42406 5.43729 5.55788 5.61315 5.63312 5.69164 5.76548 5.79521 5.97133 6.18915 6.33801 6.51146 6.63089 6.73300 6.81534 6.96392 7.13879 7.26474 7.42658 7.53553 7.66983 7.89420 8.12994 8.61407 8.75492 9.07591 9.43661 10.91693 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.029453 B = 0.003595 C = 0.003457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 950.435173 B = 7787.461108 C = 8096.459764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.055 4.055 3 C -0.140 4.140 4 C 0.109 3.891 5 C -0.140 4.140 6 C -0.047 4.047 7 C -0.120 4.120 8 C -0.109 4.109 9 C -0.106 4.106 10 H 0.118 0.882 11 C 0.511 3.489 12 O -0.538 6.538 13 N -0.708 5.708 14 C 0.265 3.735 15 H 0.048 0.952 16 C -0.147 4.147 17 C -0.534 4.534 18 H 0.062 0.938 19 C 0.066 3.934 20 N -0.882 5.882 21 Si 0.902 3.098 22 H -0.273 1.273 23 H -0.283 1.283 24 H -0.283 1.283 25 C 0.063 3.937 26 O -0.301 6.301 27 H 0.070 0.930 28 H 0.072 0.928 29 H 0.066 0.934 30 H 0.125 0.875 31 H 0.123 0.877 32 H 0.066 0.934 33 H 0.065 0.935 34 H 0.068 0.932 35 H 0.388 0.612 36 H 0.026 0.974 37 H 0.014 0.986 38 H 0.090 0.910 39 H 0.264 0.736 40 H 0.085 0.915 41 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.011 0.413 -13.730 19.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.056 4.056 3 C -0.158 4.158 4 C 0.064 3.936 5 C -0.142 4.142 6 C -0.065 4.065 7 C -0.120 4.120 8 C -0.165 4.165 9 C -0.128 4.128 10 H 0.136 0.864 11 C 0.295 3.705 12 O -0.415 6.415 13 N -0.356 5.356 14 C 0.164 3.836 15 H 0.066 0.934 16 C -0.206 4.206 17 C -0.573 4.573 18 H 0.080 0.920 19 C -0.137 4.137 20 N -0.520 5.520 21 Si 0.730 3.270 22 H -0.197 1.197 23 H -0.209 1.209 24 H -0.209 1.209 25 C -0.013 4.013 26 O -0.215 6.215 27 H 0.089 0.911 28 H 0.091 0.909 29 H 0.085 0.915 30 H 0.143 0.857 31 H 0.141 0.859 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.087 0.913 35 H 0.220 0.780 36 H 0.045 0.955 37 H 0.033 0.967 38 H 0.109 0.891 39 H 0.074 0.926 40 H 0.103 0.897 41 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -14.445 0.285 -12.779 19.288 hybrid contribution 1.660 0.053 -0.332 1.694 sum -12.784 0.339 -13.111 18.315 Atomic orbital electron populations 1.20841 0.90883 1.03013 1.02281 1.19358 0.95766 0.91619 0.98816 1.19962 0.89684 0.98391 1.07803 1.19493 0.91376 0.86150 0.96565 1.20154 0.93202 0.93964 1.06838 1.20108 0.92981 0.96601 0.96853 1.19539 0.93041 0.94963 1.04449 1.20749 0.99903 0.93959 1.01896 1.21662 0.94372 0.98113 0.98622 0.86409 1.19911 0.82876 0.79250 0.88496 1.90681 1.60980 1.44881 1.44952 1.46519 1.10778 1.62748 1.15590 1.18760 0.92301 0.95415 0.77156 0.93392 1.22076 0.97055 0.97817 1.03619 1.21244 0.90787 1.51613 0.93610 0.91997 1.24898 0.99078 0.94695 0.95071 1.69917 1.35526 1.48584 0.97958 0.86387 0.84679 0.77783 0.78199 1.19728 1.20851 1.20871 1.23835 0.84615 0.92313 1.00505 1.86823 1.19789 1.32382 1.82468 0.91105 0.90919 0.91544 0.85670 0.85881 0.91565 0.91621 0.91308 0.78016 0.95451 0.96651 0.89119 0.92595 0.89692 0.87026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.00 9.60 36.01 0.35 -0.65 16 2 C -0.06 -0.69 5.87 -104.71 -0.61 -1.31 16 3 C -0.14 -1.95 9.71 -39.30 -0.38 -2.34 16 4 C 0.11 1.76 7.04 -38.95 -0.27 1.49 16 5 C -0.14 -2.27 4.94 -104.10 -0.51 -2.78 16 6 C -0.05 -0.71 9.70 -39.72 -0.39 -1.09 16 7 C -0.12 -1.56 5.89 -104.56 -0.62 -2.17 16 8 C -0.11 -1.05 9.61 36.01 0.35 -0.71 16 9 C -0.11 -1.63 3.52 -91.56 -0.32 -1.95 16 10 H 0.12 1.45 8.14 -51.93 -0.42 1.03 16 11 C 0.51 10.44 7.12 -10.99 -0.08 10.37 16 12 O -0.54 -13.44 15.81 5.56 0.09 -13.35 16 13 N -0.71 -14.65 4.80 -54.93 -0.26 -14.91 16 14 C 0.27 6.79 2.56 -69.08 -0.18 6.61 16 15 H 0.05 1.42 7.58 -51.93 -0.39 1.03 16 16 C -0.15 -3.73 9.26 37.16 0.34 -3.39 16 17 C -0.53 -14.09 8.73 -34.44 -0.30 -14.39 16 18 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 19 C 0.07 1.77 5.30 -17.82 -0.09 1.68 16 20 N -0.88 -24.95 11.32 55.43 0.63 -24.33 16 21 Si 0.90 20.54 29.54 -169.99 -5.02 15.52 16 22 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 23 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 24 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 25 C 0.06 0.83 7.52 38.05 0.29 1.12 16 26 O -0.30 -4.88 11.10 -20.16 -0.22 -5.10 16 27 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.07 0.57 5.93 -51.93 -0.31 0.26 16 29 H 0.07 0.54 8.08 -51.93 -0.42 0.12 16 30 H 0.13 1.50 8.06 -52.49 -0.42 1.08 16 31 H 0.12 1.70 8.06 -52.49 -0.42 1.28 16 32 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.06 0.64 8.09 -51.93 -0.42 0.22 16 34 H 0.07 0.58 5.94 -51.93 -0.31 0.27 16 35 H 0.39 6.72 8.37 -40.82 -0.34 6.38 16 36 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 37 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.09 2.49 6.07 -51.92 -0.32 2.17 16 39 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 40 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.11 1.42 7.55 -51.93 -0.39 1.03 16 LS Contribution 338.87 15.07 5.11 5.11 Total: -1.00 -32.83 338.87 -7.94 -40.77 By element: Atomic # 1 Polarization: 11.63 SS G_CDS: -5.82 Total: 5.81 kcal Atomic # 6 Polarization: -7.08 SS G_CDS: -2.44 Total: -9.52 kcal Atomic # 7 Polarization: -39.60 SS G_CDS: 0.36 Total: -39.24 kcal Atomic # 8 Polarization: -18.31 SS G_CDS: -0.14 Total: -18.45 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.52 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -32.83 -7.94 -40.77 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184341266.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.103 kcal (2) G-P(sol) polarization free energy of solvation -32.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.95 seconds