Wall clock time and date at job start Tue Mar 31 2020 05:45:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.37979 * 119.81957 * 2 1 4 4 C 1.39246 * 120.23605 * 180.09657 * 3 2 1 5 5 C 1.38918 * 118.87430 * 0.12865 * 4 3 2 6 6 C 1.37693 * 120.79260 * 359.64991 * 5 4 3 7 7 C 1.38237 * 119.82476 * 179.72356 * 2 1 3 8 8 C 1.50700 * 120.12144 * 359.87037 * 7 2 1 9 9 C 1.51651 * 107.02998 * 179.45853 * 5 4 3 10 10 H 1.09000 * 110.93759 * 226.34293 * 9 5 4 11 11 C 1.50695 * 110.94116 * 102.65867 * 9 5 4 12 12 O 1.21280 * 120.00210 * 6.00762 * 11 9 5 13 13 N 1.34779 * 120.00083 * 186.01477 * 11 9 5 14 14 C 1.46502 * 119.99914 * 180.02562 * 13 11 9 15 15 H 1.08998 * 109.46895 * 34.99385 * 14 13 11 16 16 C 1.53003 * 109.46476 * 274.99497 * 14 13 11 17 17 C 1.50696 * 109.46991 * 155.00079 * 14 13 11 18 18 H 1.08002 * 119.99994 * 359.97438 * 17 14 13 19 19 C 1.37878 * 119.99867 * 180.02562 * 17 14 13 20 20 N 1.31509 * 119.99961 * 359.97438 * 19 17 14 21 21 Si 1.86801 * 119.99758 * 179.97438 * 19 17 14 22 22 H 1.48496 * 109.47265 * 359.97438 * 21 19 17 23 23 H 1.48502 * 109.47163 * 119.99760 * 21 19 17 24 24 H 1.48504 * 109.46745 * 239.99435 * 21 19 17 25 25 C 1.54704 * 101.91936 * 344.49991 * 9 5 4 26 26 O 1.36133 * 129.88737 * 180.56844 * 4 3 2 27 27 H 1.08999 * 109.47015 * 90.00482 * 1 2 3 28 28 H 1.09000 * 109.46646 * 209.99634 * 1 2 3 29 29 H 1.09000 * 109.47248 * 330.00352 * 1 2 3 30 30 H 1.07997 * 119.87905 * 0.06951 * 3 2 1 31 31 H 1.08000 * 120.01598 * 180.27792 * 6 5 4 32 32 H 1.09002 * 109.47128 * 89.99698 * 8 7 2 33 33 H 1.08996 * 109.47337 * 210.00055 * 8 7 2 34 34 H 1.09004 * 109.46558 * 330.00200 * 8 7 2 35 35 H 0.97002 * 119.99532 * 359.97438 * 13 11 9 36 36 H 1.08994 * 109.47651 * 300.00014 * 16 14 13 37 37 H 1.09000 * 109.47185 * 60.00509 * 16 14 13 38 38 H 1.09009 * 109.46808 * 180.02562 * 16 14 13 39 39 H 0.97007 * 119.99895 * 180.02562 * 20 19 17 40 40 H 1.09001 * 110.74841 * 266.99316 * 25 9 5 41 41 H 1.08998 * 110.90538 * 143.71983 * 25 9 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1932 1.1971 0.0000 4 6 3.5856 1.2072 -0.0020 5 6 4.2653 -0.0043 -0.0068 6 6 3.5786 -1.1978 -0.0022 7 6 2.1946 -1.1993 0.0058 8 6 1.4399 -2.5036 0.0150 9 6 5.7471 0.3177 -0.0217 10 1 6.2698 -0.2875 -0.7624 11 6 6.3522 0.1328 1.3460 12 8 5.6860 -0.3330 2.2460 13 7 7.6339 0.4852 1.5691 14 6 8.2223 0.3050 2.8986 15 1 7.8144 -0.5957 3.3573 16 6 7.8907 1.5170 3.7715 17 6 9.7180 0.1712 2.7720 18 1 10.1836 0.2156 1.7985 19 6 10.4918 -0.0089 3.8988 20 7 9.9247 -0.0634 5.0841 21 14 12.3458 -0.1754 3.7418 22 1 12.7318 -0.0810 2.3110 23 1 13.0070 0.9127 4.5062 24 1 12.7722 -1.4907 4.2834 25 6 5.7456 1.8103 -0.4285 26 8 4.4510 2.2580 0.0080 27 1 -0.3633 -0.0001 -1.0277 28 1 -0.3632 -0.8900 0.5138 29 1 -0.3634 0.8900 0.5138 30 1 1.6483 2.1295 0.0011 31 1 4.1197 -2.1325 -0.0014 32 1 1.2558 -2.8242 -1.0104 33 1 2.0292 -3.2608 0.5322 34 1 0.4886 -2.3692 0.5299 35 1 8.1668 0.8575 0.8492 36 1 8.2985 2.4177 3.3128 37 1 6.8089 1.6137 3.8631 38 1 8.3289 1.3831 4.7607 39 1 10.4692 -0.1898 5.8769 40 1 5.8469 1.9162 -1.5086 41 1 6.5366 2.3548 0.0872 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000184341266.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:07 Heat of formation + Delta-G solvation = -73.982043 kcal Electronic energy + Delta-G solvation = -22908.834511 eV Core-core repulsion = 19559.781927 eV Total energy + Delta-G solvation = -3349.052584 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 4.41 seconds Orbital eigenvalues (eV) -42.48505 -40.21572 -39.06752 -36.77168 -34.50854 -34.19114 -32.93551 -32.21511 -30.48985 -27.88108 -27.37575 -27.23829 -24.97660 -23.36934 -22.73388 -21.48781 -21.11684 -19.20893 -18.03323 -17.90447 -17.29367 -17.21409 -16.77859 -16.14967 -15.77862 -15.54135 -15.17950 -14.99541 -14.70559 -14.62959 -14.42885 -13.82152 -13.63928 -13.54014 -13.20073 -13.07320 -13.01294 -12.97705 -12.84630 -12.74525 -12.58687 -12.31332 -12.16141 -12.12974 -11.85098 -11.60841 -11.13036 -10.78364 -10.61194 -9.82524 -9.70655 -8.94123 -8.19489 -6.37680 0.26363 0.39325 1.43975 1.44733 1.57077 1.65900 2.27264 2.28872 2.46299 2.81440 3.11162 3.19411 3.52121 3.82252 3.93748 3.98833 4.10923 4.29764 4.34619 4.35677 4.53219 4.55312 4.70450 4.73381 4.78165 4.81076 4.87139 4.95376 5.04157 5.05672 5.16827 5.25014 5.34138 5.39438 5.42896 5.57137 5.63534 5.65724 5.75106 5.86086 6.05675 6.20671 6.70136 6.88962 7.29467 7.48904 8.87224 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.029453 B = 0.003595 C = 0.003457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 950.435173 B = 7787.461108 C = 8096.459764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.056 4.056 3 C -0.151 4.151 4 C 0.085 3.915 5 C -0.167 4.167 6 C -0.068 4.068 7 C -0.125 4.125 8 C -0.107 4.107 9 C -0.096 4.096 10 H 0.151 0.849 11 C 0.507 3.493 12 O -0.591 6.591 13 N -0.701 5.701 14 C 0.272 3.728 15 H -0.004 1.004 16 C -0.133 4.133 17 C -0.545 4.545 18 H 0.077 0.923 19 C 0.012 3.988 20 N -0.919 5.919 21 Si 0.975 3.025 22 H -0.257 1.257 23 H -0.279 1.279 24 H -0.284 1.284 25 C 0.064 3.936 26 O -0.322 6.322 27 H 0.091 0.909 28 H 0.085 0.915 29 H 0.073 0.927 30 H 0.141 0.859 31 H 0.124 0.876 32 H 0.086 0.914 33 H 0.061 0.939 34 H 0.085 0.915 35 H 0.407 0.593 36 H 0.043 0.957 37 H 0.005 0.995 38 H 0.067 0.933 39 H 0.265 0.735 40 H 0.128 0.872 41 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.240 0.617 -16.040 21.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.056 4.056 3 C -0.169 4.169 4 C 0.040 3.960 5 C -0.168 4.168 6 C -0.086 4.086 7 C -0.125 4.125 8 C -0.163 4.163 9 C -0.117 4.117 10 H 0.168 0.832 11 C 0.294 3.706 12 O -0.472 6.472 13 N -0.350 5.350 14 C 0.168 3.832 15 H 0.014 0.986 16 C -0.192 4.192 17 C -0.583 4.583 18 H 0.096 0.904 19 C -0.187 4.187 20 N -0.557 5.557 21 Si 0.800 3.200 22 H -0.181 1.181 23 H -0.205 1.205 24 H -0.210 1.210 25 C -0.011 4.011 26 O -0.236 6.236 27 H 0.109 0.891 28 H 0.104 0.896 29 H 0.092 0.908 30 H 0.159 0.841 31 H 0.142 0.858 32 H 0.104 0.896 33 H 0.080 0.920 34 H 0.104 0.896 35 H 0.243 0.757 36 H 0.062 0.938 37 H 0.024 0.976 38 H 0.086 0.914 39 H 0.075 0.925 40 H 0.146 0.854 41 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -14.669 0.508 -15.143 21.089 hybrid contribution 1.624 -0.046 0.406 1.675 sum -13.045 0.463 -14.737 19.686 Atomic orbital electron populations 1.20935 0.87962 1.04055 1.03853 1.19840 0.97849 0.90848 0.97033 1.20353 0.89267 0.99801 1.07518 1.19817 0.92274 0.86087 0.97848 1.20356 0.93564 0.94558 1.08349 1.20370 0.94194 0.96417 0.97585 1.19985 0.92632 0.96755 1.03178 1.20822 1.00064 0.92077 1.03360 1.21640 0.94159 1.00491 0.95455 0.83166 1.20839 0.82118 0.77470 0.90200 1.90648 1.62117 1.47018 1.47368 1.46228 1.11370 1.62932 1.14455 1.18342 0.92431 0.93159 0.79223 0.98630 1.21898 0.96142 0.98516 1.02625 1.21570 0.90992 1.51402 0.94373 0.90449 1.25848 1.04096 0.94169 0.94636 1.70072 1.37422 1.49417 0.98832 0.85249 0.78469 0.77430 0.78889 1.18056 1.20490 1.21049 1.24085 0.83678 0.90327 1.02994 1.86771 1.20814 1.32962 1.83102 0.89084 0.89649 0.90766 0.84148 0.85844 0.89560 0.92041 0.89621 0.75743 0.93822 0.97627 0.91442 0.92549 0.85440 0.86779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.65 9.60 71.24 0.68 -0.96 16 2 C -0.06 -1.30 5.87 -19.92 -0.12 -1.42 16 3 C -0.15 -4.10 9.71 22.45 0.22 -3.88 16 4 C 0.08 2.71 7.04 22.68 0.16 2.87 16 5 C -0.17 -5.39 4.94 -19.53 -0.10 -5.49 16 6 C -0.07 -2.02 9.70 22.18 0.22 -1.80 16 7 C -0.13 -3.13 5.89 -19.83 -0.12 -3.24 16 8 C -0.11 -1.86 9.61 71.24 0.68 -1.18 16 9 C -0.10 -2.88 3.52 -11.40 -0.04 -2.92 16 10 H 0.15 3.41 8.14 -2.39 -0.02 3.39 16 11 C 0.51 21.11 7.12 87.66 0.62 21.73 16 12 O -0.59 -30.92 15.81 -3.03 -0.05 -30.97 16 13 N -0.70 -29.15 4.80 -446.10 -2.14 -31.29 16 14 C 0.27 14.32 2.56 44.24 0.11 14.44 16 15 H 0.00 -0.26 7.58 -2.39 -0.02 -0.28 16 16 C -0.13 -6.96 9.26 71.98 0.67 -6.29 16 17 C -0.55 -28.75 8.73 25.60 0.22 -28.53 16 18 H 0.08 3.75 7.74 -2.91 -0.02 3.73 16 19 C 0.01 0.67 5.30 84.66 0.45 1.12 16 20 N -0.92 -53.22 11.32 21.45 0.24 -52.97 16 21 Si 0.98 41.79 29.54 68.60 2.03 43.81 16 22 H -0.26 -10.27 7.11 99.48 0.71 -9.56 16 23 H -0.28 -11.75 7.11 99.48 0.71 -11.04 16 24 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 25 C 0.06 1.58 7.52 72.56 0.55 2.13 16 26 O -0.32 -10.27 11.10 -95.06 -1.06 -11.33 16 27 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 28 H 0.08 1.05 5.93 -2.39 -0.01 1.04 16 29 H 0.07 1.00 8.08 -2.39 -0.02 0.98 16 30 H 0.14 3.21 8.06 -2.91 -0.02 3.19 16 31 H 0.12 3.50 8.06 -2.91 -0.02 3.47 16 32 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.06 1.12 8.09 -2.39 -0.02 1.11 16 34 H 0.09 1.20 5.94 -2.38 -0.01 1.18 16 35 H 0.41 13.64 8.37 -92.71 -0.78 12.86 16 36 H 0.04 2.07 8.14 -2.39 -0.02 2.05 16 37 H 0.00 0.25 8.14 -2.39 -0.02 0.23 16 38 H 0.07 3.85 6.07 -2.38 -0.01 3.83 16 39 H 0.27 14.49 8.31 -92.70 -0.77 13.71 16 40 H 0.13 2.09 8.14 -2.39 -0.02 2.07 16 41 H 0.11 2.72 7.55 -2.39 -0.02 2.70 16 Total: -1.00 -74.39 338.87 3.51 -70.88 By element: Atomic # 1 Polarization: 25.04 SS G_CDS: 0.27 Total: 25.31 kcal Atomic # 6 Polarization: -17.66 SS G_CDS: 4.21 Total: -13.44 kcal Atomic # 7 Polarization: -82.37 SS G_CDS: -1.90 Total: -84.27 kcal Atomic # 8 Polarization: -41.19 SS G_CDS: -1.10 Total: -42.30 kcal Atomic # 14 Polarization: 41.79 SS G_CDS: 2.03 Total: 43.81 kcal Total: -74.39 3.51 -70.88 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184341266.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.098 kcal (2) G-P(sol) polarization free energy of solvation -74.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.41 seconds