Wall clock time and date at job start Tue Mar 31 2020 06:40:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.37677 * 119.94188 * 2 1 4 4 C 1.39993 * 119.88234 * 180.25142 * 3 2 1 5 5 C 1.46940 * 120.11736 * 179.74184 * 4 3 2 6 6 C 1.35137 * 119.99934 * 179.73202 * 5 4 3 7 7 C 1.41805 * 120.00075 * 180.02562 * 6 5 4 8 8 O 1.21778 * 119.99856 * 359.97438 * 7 6 5 9 9 N 1.34775 * 120.00173 * 179.71897 * 7 6 5 10 10 C 1.36746 * 120.00093 * 180.27531 * 9 7 6 11 11 H 1.08003 * 120.00303 * 0.02562 * 10 9 7 12 12 C 1.39094 * 119.99786 * 180.02562 * 10 9 7 13 13 N 1.31337 * 120.00266 * 359.97438 * 12 10 9 14 14 Si 1.86799 * 119.99722 * 180.02562 * 12 10 9 15 15 H 1.48498 * 109.47542 * 89.99746 * 14 12 10 16 16 H 1.48505 * 109.46943 * 209.99620 * 14 12 10 17 17 H 1.48502 * 109.47444 * 329.99400 * 14 12 10 18 18 C 1.40028 * 119.76550 * 359.47416 * 4 3 2 19 19 C 1.37634 * 119.88030 * 0.26761 * 18 4 3 20 20 C 1.39010 * 119.94216 * 179.72219 * 2 1 3 21 21 O 1.35739 * 119.87915 * 359.97438 * 20 2 1 22 22 C 1.42899 * 116.99875 * 185.49141 * 21 20 2 23 23 C 1.52994 * 109.47408 * 155.05407 * 22 21 20 24 24 C 1.53005 * 109.47020 * 275.05439 * 22 21 20 25 25 H 1.09006 * 109.47147 * 270.27977 * 1 2 3 26 26 H 1.09004 * 109.46936 * 30.27954 * 1 2 3 27 27 H 1.08996 * 109.47209 * 150.28115 * 1 2 3 28 28 H 1.07996 * 120.06255 * 359.97438 * 3 2 1 29 29 H 1.08001 * 120.00351 * 359.72475 * 5 4 3 30 30 H 1.08001 * 120.00243 * 359.97438 * 6 5 4 31 31 H 0.97004 * 119.99547 * 0.27955 * 9 7 6 32 32 H 0.97000 * 120.00640 * 179.97438 * 13 12 10 33 33 H 1.07992 * 120.05954 * 180.25056 * 18 4 3 34 34 H 1.08005 * 119.94254 * 180.02562 * 19 18 4 35 35 H 1.09004 * 109.47051 * 35.04956 * 22 21 20 36 36 H 1.09008 * 109.47070 * 60.00110 * 23 22 21 37 37 H 1.08999 * 109.47463 * 180.02562 * 23 22 21 38 38 H 1.09002 * 109.47321 * 299.99972 * 23 22 21 39 39 H 1.08999 * 109.47007 * 179.97438 * 24 22 21 40 40 H 1.08996 * 109.46996 * 299.99931 * 24 22 21 41 41 H 1.09000 * 109.47200 * 60.00393 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1941 1.1930 0.0000 4 6 3.5940 1.1916 -0.0053 5 6 4.3326 2.4618 -0.0111 6 6 5.6840 2.4577 -0.0107 7 6 6.3968 3.6835 -0.0157 8 8 5.7912 4.7400 -0.0208 9 7 7.7445 3.6794 -0.0097 10 6 8.4319 4.8616 -0.0088 11 1 7.8948 5.7986 -0.0126 12 6 9.8228 4.8573 -0.0031 13 7 10.4760 3.7179 0.0020 14 14 10.7617 6.4722 -0.0012 15 1 11.0048 6.9019 1.3993 16 1 12.0617 6.2897 -0.6956 17 1 9.9653 7.5087 -0.7059 18 6 4.2880 -0.0247 0.0005 19 6 3.5912 -1.2116 0.0059 20 6 2.2008 -1.2046 0.0058 21 8 1.5184 -2.3779 0.0121 22 6 2.2880 -3.5752 0.1397 23 6 1.4158 -4.6808 0.7379 24 6 2.7875 -4.0099 -1.2397 25 1 -0.3634 0.0050 1.0277 26 1 -0.3633 0.8875 -0.5182 27 1 -0.3633 -0.8925 -0.5094 28 1 1.6542 2.1283 -0.0004 29 1 3.7956 3.3988 -0.0157 30 1 6.2212 1.5207 -0.0058 31 1 8.2269 2.8378 -0.0060 32 1 11.4460 3.7148 0.0056 33 1 5.3679 -0.0313 0.0005 34 1 4.1255 -2.1503 0.0108 35 1 3.1406 -3.3912 0.7934 36 1 0.5633 -4.8648 0.0840 37 1 2.0030 -5.5939 0.8356 38 1 1.0599 -4.3712 1.7205 39 1 3.3749 -4.9229 -1.1423 40 1 1.9350 -4.1939 -1.8934 41 1 3.4090 -3.2223 -1.6658 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000187615829.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:44 Heat of formation + Delta-G solvation = -48.757227 kcal Electronic energy + Delta-G solvation = -21618.462525 eV Core-core repulsion = 18270.503770 eV Total energy + Delta-G solvation = -3347.958754 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 2.04 seconds Orbital eigenvalues (eV) -40.45455 -38.51321 -37.79324 -34.44949 -33.89601 -32.74455 -32.03580 -31.32913 -29.18963 -27.62038 -26.67554 -25.42435 -23.53736 -22.80894 -20.96509 -20.23600 -18.59263 -18.21761 -17.65996 -16.68750 -15.77381 -15.68253 -15.02163 -14.74455 -14.68450 -14.12070 -13.94834 -13.76048 -13.41132 -13.26416 -13.04626 -12.87198 -12.72224 -12.61767 -12.36965 -12.34671 -12.00483 -11.71619 -11.54302 -11.39554 -11.18342 -11.07877 -11.04307 -10.53582 -10.45726 -10.31219 -9.68686 -9.30483 -8.77264 -8.43076 -8.07303 -7.50195 -6.57429 -3.85523 0.93798 1.38702 2.42705 3.04265 3.16614 3.20899 3.27389 3.88208 4.10149 4.45366 4.46911 4.58092 4.70374 4.76888 4.81567 4.94832 5.15398 5.19433 5.30323 5.31794 5.35950 5.38871 5.39679 5.47306 5.59150 5.62705 5.66371 5.72539 5.76285 5.84544 5.91061 6.17964 6.32222 6.36999 6.42511 6.53439 6.81313 7.04560 7.10654 7.38470 7.41775 7.99485 8.53697 9.08120 9.45252 10.04603 10.59292 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.028426 B = 0.002680 C = 0.002478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.793277 B =10446.100170 C =11294.627242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.119 4.119 3 C -0.073 4.073 4 C -0.077 4.077 5 C -0.078 4.078 6 C -0.163 4.163 7 C 0.452 3.548 8 O -0.610 6.610 9 N -0.543 5.543 10 C -0.290 4.290 11 H 0.108 0.892 12 C 0.021 3.979 13 N -0.888 5.888 14 Si 0.934 3.066 15 H -0.276 1.276 16 H -0.282 1.282 17 H -0.267 1.267 18 C -0.080 4.080 19 C -0.204 4.204 20 C 0.122 3.878 21 O -0.309 6.309 22 C 0.075 3.925 23 C -0.148 4.148 24 C -0.181 4.181 25 H 0.065 0.935 26 H 0.064 0.936 27 H 0.067 0.933 28 H 0.132 0.868 29 H 0.131 0.869 30 H 0.111 0.889 31 H 0.394 0.606 32 H 0.276 0.724 33 H 0.130 0.870 34 H 0.128 0.872 35 H 0.074 0.926 36 H 0.065 0.935 37 H 0.075 0.925 38 H 0.064 0.936 39 H 0.070 0.930 40 H 0.066 0.934 41 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.106 -17.197 0.153 22.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.120 4.120 3 C -0.091 4.091 4 C -0.078 4.078 5 C -0.100 4.100 6 C -0.184 4.184 7 C 0.243 3.757 8 O -0.499 6.499 9 N -0.175 5.175 10 C -0.420 4.420 11 H 0.126 0.874 12 C -0.182 4.182 13 N -0.528 5.528 14 Si 0.761 3.239 15 H -0.201 1.201 16 H -0.207 1.207 17 H -0.191 1.191 18 C -0.098 4.098 19 C -0.223 4.223 20 C 0.077 3.923 21 O -0.223 6.223 22 C 0.019 3.981 23 C -0.205 4.205 24 C -0.238 4.238 25 H 0.084 0.916 26 H 0.083 0.917 27 H 0.086 0.914 28 H 0.149 0.851 29 H 0.148 0.852 30 H 0.129 0.871 31 H 0.227 0.773 32 H 0.086 0.914 33 H 0.148 0.852 34 H 0.146 0.854 35 H 0.092 0.908 36 H 0.085 0.915 37 H 0.094 0.906 38 H 0.083 0.917 39 H 0.089 0.911 40 H 0.085 0.915 41 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -15.425 -16.572 0.130 22.640 hybrid contribution 1.312 0.047 -0.006 1.313 sum -14.113 -16.525 0.124 21.732 Atomic orbital electron populations 1.20576 0.90670 1.02549 1.02071 1.19124 0.96316 0.90183 1.06382 1.21078 0.93058 0.96951 0.98021 1.19054 0.92991 0.93179 1.02549 1.22006 0.93996 0.95540 0.98477 1.22172 0.95340 0.98236 1.02660 1.16709 0.82828 0.89401 0.86749 1.90645 1.68089 1.33086 1.58058 1.41998 1.05070 1.09514 1.60967 1.19867 0.88899 0.87359 1.45857 0.87427 1.25418 0.96833 0.99042 0.96934 1.69582 1.09199 1.25740 1.48230 0.85780 0.78495 0.81033 0.78617 1.20145 1.20721 1.19138 1.21239 1.00120 0.91104 0.97305 1.21150 0.92833 0.99226 1.09081 1.18885 0.90263 0.85424 0.97735 1.86039 1.36140 1.12271 1.87863 1.22421 0.94720 0.83679 0.97250 1.21843 1.00398 0.96705 1.01525 1.22392 1.02170 1.02246 0.97023 0.91631 0.91731 0.91406 0.85059 0.85160 0.87104 0.77271 0.91435 0.85250 0.85404 0.90832 0.91546 0.90613 0.91687 0.91097 0.91508 0.91607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.03 9.78 36.00 0.35 -0.68 16 2 C -0.12 -1.51 5.89 -104.54 -0.62 -2.13 16 3 C -0.07 -0.99 9.43 -39.13 -0.37 -1.35 16 4 C -0.08 -1.18 5.87 -105.05 -0.62 -1.80 16 5 C -0.08 -1.40 9.41 -37.16 -0.35 -1.75 16 6 C -0.16 -3.23 9.19 -39.32 -0.36 -3.59 16 7 C 0.45 11.33 7.52 -14.90 -0.11 11.22 16 8 O -0.61 -17.39 15.68 5.12 0.08 -17.31 16 9 N -0.54 -14.14 5.26 -13.56 -0.07 -14.22 16 10 C -0.29 -8.11 9.67 -15.04 -0.15 -8.26 16 11 H 0.11 3.15 7.15 -52.48 -0.38 2.77 16 12 C 0.02 0.56 5.50 -17.45 -0.10 0.47 16 13 N -0.89 -23.78 13.05 55.50 0.72 -23.05 16 14 Si 0.93 20.69 29.55 -169.99 -5.02 15.67 16 15 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 16 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 17 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 18 C -0.08 -1.11 9.40 -39.13 -0.37 -1.47 16 19 C -0.20 -2.53 8.21 -39.50 -0.32 -2.85 16 20 C 0.12 1.54 6.58 -38.99 -0.26 1.28 16 21 O -0.31 -3.48 8.82 -18.92 -0.17 -3.65 16 22 C 0.08 0.64 2.84 -26.73 -0.08 0.56 16 23 C -0.15 -0.95 9.56 37.15 0.36 -0.59 16 24 C -0.18 -1.37 9.17 37.16 0.34 -1.03 16 25 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.06 0.58 8.08 -51.93 -0.42 0.16 16 27 H 0.07 0.68 7.52 -51.93 -0.39 0.28 16 28 H 0.13 1.56 8.06 -52.49 -0.42 1.14 16 29 H 0.13 2.45 7.45 -52.49 -0.39 2.06 16 30 H 0.11 1.88 6.07 -52.49 -0.32 1.56 16 31 H 0.39 9.70 7.85 -40.82 -0.32 9.38 16 32 H 0.28 6.92 8.31 -40.82 -0.34 6.58 16 33 H 0.13 1.68 6.16 -52.49 -0.32 1.36 16 34 H 0.13 1.30 5.40 -52.48 -0.28 1.02 16 35 H 0.07 0.60 6.30 -51.93 -0.33 0.28 16 36 H 0.07 0.42 8.14 -51.92 -0.42 0.00 16 37 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 38 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.06 0.57 6.90 -51.93 -0.36 0.21 16 LS Contribution 345.82 15.07 5.21 5.21 Total: -1.00 -31.64 345.82 -7.49 -39.13 By element: Atomic # 1 Polarization: 15.80 SS G_CDS: -5.60 Total: 10.20 kcal Atomic # 6 Polarization: -9.33 SS G_CDS: -2.64 Total: -11.97 kcal Atomic # 7 Polarization: -37.92 SS G_CDS: 0.65 Total: -37.27 kcal Atomic # 8 Polarization: -20.87 SS G_CDS: -0.09 Total: -20.96 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -31.64 -7.49 -39.13 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187615829.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.625 kcal (2) G-P(sol) polarization free energy of solvation -31.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.04 seconds