Wall clock time and date at job start Tue Mar 31 2020 06:40:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.37677 * 119.94188 * 2 1 4 4 C 1.39993 * 119.88234 * 180.25142 * 3 2 1 5 5 C 1.46940 * 120.11736 * 179.74184 * 4 3 2 6 6 C 1.35137 * 119.99934 * 179.73202 * 5 4 3 7 7 C 1.41805 * 120.00075 * 180.02562 * 6 5 4 8 8 O 1.21778 * 119.99856 * 359.97438 * 7 6 5 9 9 N 1.34775 * 120.00173 * 179.71897 * 7 6 5 10 10 C 1.36746 * 120.00093 * 180.27531 * 9 7 6 11 11 H 1.08003 * 120.00303 * 0.02562 * 10 9 7 12 12 C 1.39094 * 119.99786 * 180.02562 * 10 9 7 13 13 N 1.31337 * 120.00266 * 359.97438 * 12 10 9 14 14 Si 1.86799 * 119.99722 * 180.02562 * 12 10 9 15 15 H 1.48498 * 109.47542 * 89.99746 * 14 12 10 16 16 H 1.48505 * 109.46943 * 209.99620 * 14 12 10 17 17 H 1.48502 * 109.47444 * 329.99400 * 14 12 10 18 18 C 1.40028 * 119.76550 * 359.47416 * 4 3 2 19 19 C 1.37634 * 119.88030 * 0.26761 * 18 4 3 20 20 C 1.39010 * 119.94216 * 179.72219 * 2 1 3 21 21 O 1.35739 * 119.87915 * 359.97438 * 20 2 1 22 22 C 1.42899 * 116.99875 * 185.49141 * 21 20 2 23 23 C 1.52994 * 109.47408 * 155.05407 * 22 21 20 24 24 C 1.53005 * 109.47020 * 275.05439 * 22 21 20 25 25 H 1.09006 * 109.47147 * 270.27977 * 1 2 3 26 26 H 1.09004 * 109.46936 * 30.27954 * 1 2 3 27 27 H 1.08996 * 109.47209 * 150.28115 * 1 2 3 28 28 H 1.07996 * 120.06255 * 359.97438 * 3 2 1 29 29 H 1.08001 * 120.00351 * 359.72475 * 5 4 3 30 30 H 1.08001 * 120.00243 * 359.97438 * 6 5 4 31 31 H 0.97004 * 119.99547 * 0.27955 * 9 7 6 32 32 H 0.97000 * 120.00640 * 179.97438 * 13 12 10 33 33 H 1.07992 * 120.05954 * 180.25056 * 18 4 3 34 34 H 1.08005 * 119.94254 * 180.02562 * 19 18 4 35 35 H 1.09004 * 109.47051 * 35.04956 * 22 21 20 36 36 H 1.09008 * 109.47070 * 60.00110 * 23 22 21 37 37 H 1.08999 * 109.47463 * 180.02562 * 23 22 21 38 38 H 1.09002 * 109.47321 * 299.99972 * 23 22 21 39 39 H 1.08999 * 109.47007 * 179.97438 * 24 22 21 40 40 H 1.08996 * 109.46996 * 299.99931 * 24 22 21 41 41 H 1.09000 * 109.47200 * 60.00393 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1941 1.1930 0.0000 4 6 3.5940 1.1916 -0.0053 5 6 4.3326 2.4618 -0.0111 6 6 5.6840 2.4577 -0.0107 7 6 6.3968 3.6835 -0.0157 8 8 5.7912 4.7400 -0.0208 9 7 7.7445 3.6794 -0.0097 10 6 8.4319 4.8616 -0.0088 11 1 7.8948 5.7986 -0.0126 12 6 9.8228 4.8573 -0.0031 13 7 10.4760 3.7179 0.0020 14 14 10.7617 6.4722 -0.0012 15 1 11.0048 6.9019 1.3993 16 1 12.0617 6.2897 -0.6956 17 1 9.9653 7.5087 -0.7059 18 6 4.2880 -0.0247 0.0005 19 6 3.5912 -1.2116 0.0059 20 6 2.2008 -1.2046 0.0058 21 8 1.5184 -2.3779 0.0121 22 6 2.2880 -3.5752 0.1397 23 6 1.4158 -4.6808 0.7379 24 6 2.7875 -4.0099 -1.2397 25 1 -0.3634 0.0050 1.0277 26 1 -0.3633 0.8875 -0.5182 27 1 -0.3633 -0.8925 -0.5094 28 1 1.6542 2.1283 -0.0004 29 1 3.7956 3.3988 -0.0157 30 1 6.2212 1.5207 -0.0058 31 1 8.2269 2.8378 -0.0060 32 1 11.4460 3.7148 0.0056 33 1 5.3679 -0.0313 0.0005 34 1 4.1255 -2.1503 0.0108 35 1 3.1406 -3.3912 0.7934 36 1 0.5633 -4.8648 0.0840 37 1 2.0030 -5.5939 0.8356 38 1 1.0599 -4.3712 1.7205 39 1 3.3749 -4.9229 -1.1423 40 1 1.9350 -4.1939 -1.8934 41 1 3.4090 -3.2223 -1.6658 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000187615829.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:42 Heat of formation + Delta-G solvation = -67.309667 kcal Electronic energy + Delta-G solvation = -21619.267019 eV Core-core repulsion = 18270.503770 eV Total energy + Delta-G solvation = -3348.763248 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 1.48 seconds Orbital eigenvalues (eV) -41.40929 -40.33997 -38.91064 -36.20779 -35.21292 -33.69061 -33.34781 -33.12693 -30.43929 -28.19177 -27.75616 -27.14175 -24.81218 -23.92995 -21.98340 -21.50473 -20.37466 -19.51772 -19.07321 -18.23587 -17.05519 -16.52541 -16.46504 -16.19087 -15.80198 -15.58947 -15.43037 -15.14797 -14.70717 -14.47728 -14.10256 -13.93427 -13.62931 -13.50122 -13.37827 -13.13347 -13.10997 -12.98029 -12.86110 -12.73085 -12.50054 -12.40724 -12.12065 -12.03827 -11.83884 -11.59482 -11.46615 -10.65461 -10.49715 -10.10290 -9.80208 -8.70931 -8.56036 -5.97563 -0.34540 0.36398 1.05499 1.40348 1.44453 1.54171 2.22285 2.27531 2.46548 2.87624 3.30303 3.31116 3.71903 3.81048 3.87184 3.93757 4.00123 4.17379 4.24006 4.28193 4.31345 4.50864 4.62242 4.71208 4.75537 4.83409 4.86282 4.88544 4.91775 4.93009 5.13695 5.22866 5.23730 5.27306 5.33147 5.35010 5.42478 5.55034 5.74177 5.80282 5.98980 6.46335 6.53441 7.04689 7.47106 8.06242 8.61204 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.028426 B = 0.002680 C = 0.002478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.793277 B =10446.100170 C =11294.627242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.132 4.132 3 C -0.067 4.067 4 C -0.112 4.112 5 C -0.031 4.031 6 C -0.201 4.201 7 C 0.455 3.545 8 O -0.652 6.652 9 N -0.555 5.555 10 C -0.335 4.335 11 H 0.082 0.918 12 C -0.012 4.012 13 N -0.911 5.911 14 Si 0.999 3.001 15 H -0.268 1.268 16 H -0.267 1.267 17 H -0.272 1.272 18 C -0.076 4.076 19 C -0.208 4.208 20 C 0.132 3.868 21 O -0.314 6.314 22 C 0.065 3.935 23 C -0.145 4.145 24 C -0.179 4.179 25 H 0.074 0.926 26 H 0.076 0.924 27 H 0.069 0.931 28 H 0.145 0.855 29 H 0.118 0.882 30 H 0.139 0.861 31 H 0.398 0.602 32 H 0.282 0.718 33 H 0.137 0.863 34 H 0.151 0.849 35 H 0.078 0.922 36 H 0.066 0.934 37 H 0.096 0.904 38 H 0.061 0.939 39 H 0.091 0.909 40 H 0.065 0.935 41 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.179 -19.461 0.250 25.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.132 4.132 3 C -0.085 4.085 4 C -0.112 4.112 5 C -0.053 4.053 6 C -0.222 4.222 7 C 0.248 3.752 8 O -0.544 6.544 9 N -0.188 5.188 10 C -0.465 4.465 11 H 0.100 0.900 12 C -0.213 4.213 13 N -0.550 5.550 14 Si 0.821 3.179 15 H -0.193 1.193 16 H -0.191 1.191 17 H -0.196 1.196 18 C -0.094 4.094 19 C -0.226 4.226 20 C 0.086 3.914 21 O -0.228 6.228 22 C 0.010 3.990 23 C -0.202 4.202 24 C -0.236 4.236 25 H 0.093 0.907 26 H 0.095 0.905 27 H 0.088 0.912 28 H 0.162 0.838 29 H 0.136 0.864 30 H 0.157 0.843 31 H 0.232 0.768 32 H 0.092 0.908 33 H 0.154 0.846 34 H 0.168 0.832 35 H 0.096 0.904 36 H 0.085 0.915 37 H 0.115 0.885 38 H 0.080 0.920 39 H 0.110 0.890 40 H 0.084 0.916 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -16.506 -18.884 0.228 25.082 hybrid contribution 1.280 0.472 -0.035 1.364 sum -15.226 -18.413 0.193 23.894 Atomic orbital electron populations 1.20607 0.88825 1.03282 1.02870 1.19435 0.97779 0.89900 1.06128 1.21272 0.92447 0.98116 0.96640 1.18954 0.93704 0.92248 1.06299 1.22164 0.93444 0.96582 0.93077 1.21938 0.95759 0.97009 1.07445 1.17488 0.82673 0.90513 0.84509 1.90594 1.68905 1.35287 1.59646 1.41951 1.05370 1.09166 1.62294 1.19777 0.89898 0.87244 1.49538 0.89998 1.26204 0.96857 1.02519 0.95709 1.69634 1.09732 1.27195 1.48475 0.84850 0.77338 0.76791 0.78904 1.19313 1.19107 1.19624 1.21396 1.00660 0.91120 0.96240 1.21368 0.92962 0.99622 1.08635 1.19114 0.90498 0.86134 0.95647 1.86060 1.36899 1.12617 1.87251 1.22753 0.95197 0.83016 0.98071 1.21867 1.00452 0.96706 1.01130 1.22385 1.02180 1.02774 0.96262 0.90729 0.90515 0.91202 0.83750 0.86409 0.84304 0.76784 0.90803 0.84562 0.83156 0.90395 0.91478 0.88494 0.91956 0.89015 0.91622 0.92785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.75 9.78 71.23 0.70 -1.05 16 2 C -0.13 -3.03 5.89 -19.81 -0.12 -3.15 16 3 C -0.07 -1.69 9.43 22.56 0.21 -1.47 16 4 C -0.11 -3.26 5.87 -20.14 -0.12 -3.38 16 5 C -0.03 -1.11 9.41 23.84 0.22 -0.88 16 6 C -0.20 -8.07 9.19 22.44 0.21 -7.87 16 7 C 0.46 23.76 7.52 85.12 0.64 24.40 16 8 O -0.65 -38.93 15.68 -4.60 -0.07 -39.00 16 9 N -0.55 -30.15 5.26 -314.99 -1.66 -31.81 16 10 C -0.33 -19.59 9.67 84.13 0.81 -18.77 16 11 H 0.08 5.09 7.15 -2.91 -0.02 5.07 16 12 C -0.01 -0.64 5.50 84.97 0.47 -0.17 16 13 N -0.91 -49.35 13.05 21.69 0.28 -49.07 16 14 Si 1.00 42.96 29.55 68.60 2.03 44.98 16 15 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 16 H -0.27 -10.73 7.11 99.48 0.71 -10.02 16 17 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 18 C -0.08 -1.98 9.40 22.56 0.21 -1.77 16 19 C -0.21 -4.62 8.21 22.32 0.18 -4.43 16 20 C 0.13 3.00 6.58 22.65 0.15 3.15 16 21 O -0.31 -6.24 8.82 -90.63 -0.80 -7.04 16 22 C 0.07 0.91 2.84 30.59 0.09 1.00 16 23 C -0.14 -1.43 9.56 71.98 0.69 -0.74 16 24 C -0.18 -2.19 9.17 71.98 0.66 -1.53 16 25 H 0.07 1.19 8.14 -2.38 -0.02 1.17 16 26 H 0.08 1.16 8.08 -2.38 -0.02 1.14 16 27 H 0.07 1.21 7.52 -2.39 -0.02 1.19 16 28 H 0.14 3.17 8.06 -2.91 -0.02 3.15 16 29 H 0.12 4.50 7.45 -2.91 -0.02 4.47 16 30 H 0.14 4.69 6.07 -2.91 -0.02 4.67 16 31 H 0.40 20.36 7.85 -92.71 -0.73 19.64 16 32 H 0.28 14.14 8.31 -92.71 -0.77 13.37 16 33 H 0.14 3.31 6.16 -2.91 -0.02 3.29 16 34 H 0.15 2.61 5.40 -2.91 -0.02 2.60 16 35 H 0.08 1.04 6.30 -2.39 -0.02 1.02 16 36 H 0.07 0.66 8.14 -2.38 -0.02 0.64 16 37 H 0.10 0.56 8.14 -2.39 -0.02 0.54 16 38 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 39 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 40 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 41 H 0.05 0.80 6.90 -2.39 -0.02 0.78 16 Total: -1.00 -70.28 345.82 5.11 -65.17 By element: Atomic # 1 Polarization: 33.12 SS G_CDS: 0.32 Total: 33.44 kcal Atomic # 6 Polarization: -21.69 SS G_CDS: 5.01 Total: -16.68 kcal Atomic # 7 Polarization: -79.50 SS G_CDS: -1.38 Total: -80.87 kcal Atomic # 8 Polarization: -45.17 SS G_CDS: -0.87 Total: -46.05 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 2.03 Total: 44.98 kcal Total: -70.28 5.11 -65.17 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187615829.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.139 kcal (2) G-P(sol) polarization free energy of solvation -70.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.171 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.48 seconds