Wall clock time and date at job start Tue Mar 31 2020 06:01:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38358 * 119.85702 * 2 1 4 4 C 1.37957 * 120.14783 * 180.02562 * 3 2 1 5 5 C 1.50708 * 120.07496 * 179.97438 * 4 3 2 6 6 C 1.39576 * 119.85132 * 0.02562 * 4 3 2 7 7 C 1.47849 * 120.14386 * 179.97438 * 6 4 3 8 8 O 1.21552 * 119.99651 * 89.99652 * 7 6 4 9 9 N 1.34772 * 119.99897 * 270.00152 * 7 6 4 10 10 C 1.47066 * 136.05397 * 179.97438 * 9 7 6 11 11 C 1.53503 * 87.98596 * 152.84244 * 10 9 7 12 12 O 1.42897 * 114.20466 * 272.48084 * 11 10 9 13 13 C 1.50701 * 114.20491 * 139.65156 * 11 10 9 14 14 H 1.07990 * 120.00399 * 0.02562 * 13 11 10 15 15 C 1.37879 * 119.99442 * 180.02562 * 13 11 10 16 16 N 1.31517 * 120.00173 * 359.97438 * 15 13 11 17 17 Si 1.86802 * 119.99605 * 180.02562 * 15 13 11 18 18 H 1.48494 * 109.47160 * 59.99885 * 17 15 13 19 19 H 1.48505 * 109.46723 * 179.97438 * 17 15 13 20 20 H 1.48501 * 109.47020 * 299.99125 * 17 15 13 21 21 C 1.47060 * 136.06000 * 359.94822 * 9 7 6 22 22 C 1.39574 * 119.71458 * 0.25351 * 6 4 3 23 23 C 1.50696 * 120.07815 * 179.72400 * 22 6 4 24 24 C 1.37959 * 119.84801 * 359.47313 * 22 6 4 25 25 H 1.09000 * 109.47190 * 89.99945 * 1 2 3 26 26 H 1.09002 * 109.47356 * 210.00761 * 1 2 3 27 27 H 1.09006 * 109.46795 * 330.00727 * 1 2 3 28 28 H 1.08002 * 119.92865 * 0.02562 * 3 2 1 29 29 H 1.08997 * 109.46936 * 270.01986 * 5 4 3 30 30 H 1.09005 * 109.46753 * 30.01679 * 5 4 3 31 31 H 1.08998 * 109.47039 * 150.01491 * 5 4 3 32 32 H 1.09000 * 113.46827 * 267.61848 * 10 9 7 33 33 H 1.09003 * 113.47151 * 38.06638 * 10 9 7 34 34 H 0.96701 * 113.99865 * 179.97438 * 12 11 10 35 35 H 0.97003 * 119.99434 * 180.02562 * 16 15 13 36 36 H 1.09007 * 113.46761 * 321.93701 * 21 9 7 37 37 H 1.09003 * 113.46830 * 92.37669 * 21 9 7 38 38 H 1.08998 * 109.46964 * 90.00089 * 23 22 6 39 39 H 1.08998 * 109.47537 * 210.00643 * 23 22 6 40 40 H 1.08997 * 109.46869 * 330.00764 * 23 22 6 41 41 H 1.08000 * 119.92847 * 180.27195 * 24 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1958 1.1999 0.0000 4 6 3.5753 1.2069 -0.0005 5 6 4.3239 2.5149 -0.0011 6 6 4.2762 -0.0001 -0.0016 7 6 5.7547 -0.0001 -0.0028 8 8 6.3632 -0.0006 1.0495 9 7 6.4276 0.0004 -1.1705 10 6 7.8406 0.0010 -1.5783 11 6 7.4105 -0.6990 -2.8749 12 8 7.3579 -2.1240 -2.7817 13 6 8.1212 -0.2053 -4.1087 14 1 8.8617 0.5766 -4.0288 15 6 7.8259 -0.7521 -5.3395 16 7 6.9245 -1.7047 -5.4367 17 14 8.7074 -0.1406 -6.8688 18 1 10.1683 -0.3610 -6.7195 19 1 8.2138 -0.8847 -8.0554 20 1 8.4410 1.3094 -7.0472 21 6 6.0722 0.0002 -2.5975 22 6 3.5753 -1.2071 -0.0075 23 6 4.3237 -2.5150 -0.0150 24 6 2.1958 -1.2000 -0.0012 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3634 -0.8899 0.5140 27 1 -0.3633 0.8901 0.5138 28 1 1.6523 2.1332 0.0004 29 1 4.5037 2.8302 -1.0289 30 1 3.7322 3.2724 0.5131 31 1 5.2771 2.3882 0.5121 32 1 8.2458 1.0002 -1.7383 33 1 8.4762 -0.6154 -0.9425 34 1 7.0863 -2.5619 -3.6000 35 1 6.7171 -2.0896 -6.3027 36 1 5.2038 -0.6170 -2.8284 37 1 6.0068 0.9991 -3.0287 38 1 4.5049 -2.8358 1.0108 39 1 3.7315 -3.2697 -0.5325 40 1 5.2763 -2.3856 -0.5287 41 1 1.6521 -2.1332 -0.0013 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000189547553.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:16 Heat of formation + Delta-G solvation = -36.559267 kcal Electronic energy + Delta-G solvation = -23508.334920 eV Core-core repulsion = 20160.905110 eV Total energy + Delta-G solvation = -3347.429811 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.21189 -38.90192 -37.15165 -34.00229 -33.46800 -33.37342 -32.20210 -29.02487 -27.86788 -27.01473 -26.60817 -25.15881 -25.03576 -21.55094 -20.66795 -19.91012 -18.41446 -17.54109 -16.56465 -16.06657 -15.75570 -15.14833 -14.47211 -14.27002 -14.17091 -14.04185 -13.81663 -13.21331 -13.02384 -13.00404 -12.89117 -12.69190 -12.50283 -12.44844 -12.24968 -11.93008 -11.60837 -11.55023 -11.23693 -11.14081 -11.04932 -11.01806 -10.85952 -10.50977 -10.27307 -9.67357 -9.20596 -8.78907 -8.46250 -8.43397 -8.36426 -7.86205 -6.41327 -4.51720 1.29613 1.48213 3.14214 3.15215 3.21221 3.23397 3.51058 3.81975 4.17113 4.77864 4.80647 4.82696 4.89430 5.01688 5.31448 5.32032 5.51787 5.52783 5.56623 5.62716 5.68344 5.73401 5.82278 5.89795 5.91009 5.95434 6.06153 6.18890 6.23230 6.39685 6.44742 6.47921 6.56361 6.59650 6.67484 6.70841 6.73528 7.07253 7.10670 7.61704 7.79194 8.46314 8.52017 8.74254 9.19603 9.47542 10.65350 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.019215 B = 0.004733 C = 0.004569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1456.811084 B = 5913.904247 C = 6127.388875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.073 4.073 3 C -0.132 4.132 4 C -0.046 4.046 5 C -0.120 4.120 6 C -0.114 4.114 7 C 0.587 3.413 8 O -0.559 6.559 9 N -0.626 5.626 10 C 0.105 3.895 11 C 0.242 3.758 12 O -0.571 6.571 13 C -0.534 4.534 14 H 0.072 0.928 15 C 0.073 3.927 16 N -0.898 5.898 17 Si 0.909 3.091 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.273 1.273 21 C 0.075 3.925 22 C -0.039 4.039 23 C -0.123 4.123 24 C -0.131 4.131 25 H 0.071 0.929 26 H 0.065 0.935 27 H 0.065 0.935 28 H 0.123 0.877 29 H 0.075 0.925 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.086 0.914 33 H 0.067 0.933 34 H 0.394 0.606 35 H 0.274 0.726 36 H 0.063 0.937 37 H 0.080 0.920 38 H 0.072 0.928 39 H 0.070 0.930 40 H 0.079 0.921 41 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.637 3.458 5.598 12.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.073 4.073 3 C -0.150 4.150 4 C -0.047 4.047 5 C -0.176 4.176 6 C -0.117 4.117 7 C 0.376 3.624 8 O -0.439 6.439 9 N -0.358 5.358 10 C -0.017 4.017 11 C 0.200 3.800 12 O -0.384 6.384 13 C -0.573 4.573 14 H 0.090 0.910 15 C -0.129 4.129 16 N -0.538 5.538 17 Si 0.736 3.264 18 H -0.198 1.198 19 H -0.210 1.210 20 H -0.199 1.199 21 C -0.048 4.048 22 C -0.039 4.039 23 C -0.180 4.180 24 C -0.149 4.149 25 H 0.089 0.911 26 H 0.084 0.916 27 H 0.084 0.916 28 H 0.141 0.859 29 H 0.094 0.906 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.104 0.896 33 H 0.085 0.915 34 H 0.250 0.750 35 H 0.085 0.915 36 H 0.082 0.918 37 H 0.098 0.902 38 H 0.090 0.910 39 H 0.089 0.911 40 H 0.098 0.902 41 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -10.328 3.440 6.802 12.836 hybrid contribution 0.056 0.246 -1.455 1.477 sum -10.272 3.686 5.346 12.153 Atomic orbital electron populations 1.20787 0.91174 1.02597 1.02344 1.19943 0.95933 0.93014 0.98399 1.20728 0.92916 0.97587 1.03784 1.19820 0.93592 0.94072 0.97190 1.20856 1.00312 0.93680 1.02775 1.19685 0.93076 0.93521 1.05392 1.17661 0.86266 0.76145 0.82323 1.90733 1.69653 1.52743 1.30802 1.49745 1.10463 1.69733 1.05876 1.23364 0.82689 1.00140 0.95462 1.19517 0.89476 0.80293 0.90718 1.86033 1.91266 1.18293 1.42795 1.21387 1.23629 1.21369 0.90867 0.90977 1.25069 0.94102 0.94222 0.99556 1.69258 1.31978 1.26269 1.26310 0.86374 0.80028 0.79008 0.81039 1.19809 1.20976 1.19875 1.24208 1.03025 1.01108 0.76461 1.19905 0.93548 0.94354 0.96124 1.20904 1.01084 0.93439 1.02565 1.20783 0.93011 0.97641 1.03428 0.91073 0.91572 0.91628 0.85867 0.90641 0.91234 0.91224 0.89632 0.91471 0.74965 0.91517 0.91841 0.90235 0.90955 0.91132 0.90176 0.85780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.04 10.00 36.00 0.36 -0.68 16 2 C -0.07 -0.94 5.89 -104.53 -0.62 -1.56 16 3 C -0.13 -1.80 9.34 -39.64 -0.37 -2.17 16 4 C -0.05 -0.74 5.91 -104.22 -0.62 -1.36 16 5 C -0.12 -1.71 9.62 36.01 0.35 -1.37 16 6 C -0.11 -2.13 5.45 -104.97 -0.57 -2.70 16 7 C 0.59 12.60 4.44 -12.33 -0.05 12.55 16 8 O -0.56 -13.54 17.88 5.32 0.10 -13.44 16 9 N -0.63 -13.50 3.69 -186.32 -0.69 -14.18 16 10 C 0.11 2.31 8.03 -8.51 -0.07 2.24 16 11 C 0.24 5.76 1.58 -91.24 -0.14 5.61 16 12 O -0.57 -14.52 13.54 -35.23 -0.48 -14.99 16 13 C -0.53 -13.21 8.69 -34.44 -0.30 -13.51 16 14 H 0.07 1.72 7.81 -52.49 -0.41 1.31 16 15 C 0.07 1.80 5.40 -17.82 -0.10 1.70 16 16 N -0.90 -22.52 11.01 55.43 0.61 -21.91 16 17 Si 0.91 19.19 29.54 -169.99 -5.02 14.17 16 18 H -0.27 -5.79 7.11 56.52 0.40 -5.38 16 19 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 20 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 21 C 0.08 1.64 7.82 -8.50 -0.07 1.57 16 22 C -0.04 -0.66 5.91 -104.23 -0.62 -1.27 16 23 C -0.12 -2.04 9.62 36.00 0.35 -1.69 16 24 C -0.13 -1.85 9.34 -39.64 -0.37 -2.22 16 25 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.07 0.54 8.08 -51.93 -0.42 0.12 16 27 H 0.06 0.52 8.08 -51.93 -0.42 0.10 16 28 H 0.12 1.34 8.06 -52.49 -0.42 0.92 16 29 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 30 H 0.07 0.80 8.09 -51.93 -0.42 0.38 16 31 H 0.07 1.13 7.08 -51.93 -0.37 0.77 16 32 H 0.09 1.70 8.10 -51.93 -0.42 1.28 16 33 H 0.07 1.50 8.14 -51.93 -0.42 1.08 16 34 H 0.39 10.15 6.33 45.56 0.29 10.44 16 35 H 0.27 6.57 8.31 -40.82 -0.34 6.23 16 36 H 0.06 1.43 8.14 -51.93 -0.42 1.01 16 37 H 0.08 1.66 8.10 -51.93 -0.42 1.24 16 38 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 39 H 0.07 0.99 8.09 -51.93 -0.42 0.57 16 40 H 0.08 1.58 7.08 -51.93 -0.37 1.21 16 41 H 0.12 1.45 8.06 -52.49 -0.42 1.03 16 LS Contribution 345.98 15.07 5.21 5.21 Total: -1.00 -28.56 345.98 -8.57 -37.13 By element: Atomic # 1 Polarization: 18.35 SS G_CDS: -5.47 Total: 12.88 kcal Atomic # 6 Polarization: -2.03 SS G_CDS: -2.84 Total: -4.87 kcal Atomic # 7 Polarization: -36.02 SS G_CDS: -0.08 Total: -36.10 kcal Atomic # 8 Polarization: -28.05 SS G_CDS: -0.38 Total: -28.44 kcal Atomic # 14 Polarization: 19.19 SS G_CDS: -5.02 Total: 14.17 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -28.56 -8.57 -37.13 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189547553.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.574 kcal (2) G-P(sol) polarization free energy of solvation -28.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds