Wall clock time and date at job start Tue Mar 31 2020 06:01:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38358 * 119.85702 * 2 1 4 4 C 1.37957 * 120.14783 * 180.02562 * 3 2 1 5 5 C 1.50708 * 120.07496 * 179.97438 * 4 3 2 6 6 C 1.39576 * 119.85132 * 0.02562 * 4 3 2 7 7 C 1.47849 * 120.14386 * 179.97438 * 6 4 3 8 8 O 1.21552 * 119.99651 * 89.99652 * 7 6 4 9 9 N 1.34772 * 119.99897 * 270.00152 * 7 6 4 10 10 C 1.47066 * 136.05397 * 179.97438 * 9 7 6 11 11 C 1.53503 * 87.98596 * 152.84244 * 10 9 7 12 12 O 1.42897 * 114.20466 * 272.48084 * 11 10 9 13 13 C 1.50701 * 114.20491 * 139.65156 * 11 10 9 14 14 H 1.07990 * 120.00399 * 0.02562 * 13 11 10 15 15 C 1.37879 * 119.99442 * 180.02562 * 13 11 10 16 16 N 1.31517 * 120.00173 * 359.97438 * 15 13 11 17 17 Si 1.86802 * 119.99605 * 180.02562 * 15 13 11 18 18 H 1.48494 * 109.47160 * 59.99885 * 17 15 13 19 19 H 1.48505 * 109.46723 * 179.97438 * 17 15 13 20 20 H 1.48501 * 109.47020 * 299.99125 * 17 15 13 21 21 C 1.47060 * 136.06000 * 359.94822 * 9 7 6 22 22 C 1.39574 * 119.71458 * 0.25351 * 6 4 3 23 23 C 1.50696 * 120.07815 * 179.72400 * 22 6 4 24 24 C 1.37959 * 119.84801 * 359.47313 * 22 6 4 25 25 H 1.09000 * 109.47190 * 89.99945 * 1 2 3 26 26 H 1.09002 * 109.47356 * 210.00761 * 1 2 3 27 27 H 1.09006 * 109.46795 * 330.00727 * 1 2 3 28 28 H 1.08002 * 119.92865 * 0.02562 * 3 2 1 29 29 H 1.08997 * 109.46936 * 270.01986 * 5 4 3 30 30 H 1.09005 * 109.46753 * 30.01679 * 5 4 3 31 31 H 1.08998 * 109.47039 * 150.01491 * 5 4 3 32 32 H 1.09000 * 113.46827 * 267.61848 * 10 9 7 33 33 H 1.09003 * 113.47151 * 38.06638 * 10 9 7 34 34 H 0.96701 * 113.99865 * 179.97438 * 12 11 10 35 35 H 0.97003 * 119.99434 * 180.02562 * 16 15 13 36 36 H 1.09007 * 113.46761 * 321.93701 * 21 9 7 37 37 H 1.09003 * 113.46830 * 92.37669 * 21 9 7 38 38 H 1.08998 * 109.46964 * 90.00089 * 23 22 6 39 39 H 1.08998 * 109.47537 * 210.00643 * 23 22 6 40 40 H 1.08997 * 109.46869 * 330.00764 * 23 22 6 41 41 H 1.08000 * 119.92847 * 180.27195 * 24 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1958 1.1999 0.0000 4 6 3.5753 1.2069 -0.0005 5 6 4.3239 2.5149 -0.0011 6 6 4.2762 -0.0001 -0.0016 7 6 5.7547 -0.0001 -0.0028 8 8 6.3632 -0.0006 1.0495 9 7 6.4276 0.0004 -1.1705 10 6 7.8406 0.0010 -1.5783 11 6 7.4105 -0.6990 -2.8749 12 8 7.3579 -2.1240 -2.7817 13 6 8.1212 -0.2053 -4.1087 14 1 8.8617 0.5766 -4.0288 15 6 7.8259 -0.7521 -5.3395 16 7 6.9245 -1.7047 -5.4367 17 14 8.7074 -0.1406 -6.8688 18 1 10.1683 -0.3610 -6.7195 19 1 8.2138 -0.8847 -8.0554 20 1 8.4410 1.3094 -7.0472 21 6 6.0722 0.0002 -2.5975 22 6 3.5753 -1.2071 -0.0075 23 6 4.3237 -2.5150 -0.0150 24 6 2.1958 -1.2000 -0.0012 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3634 -0.8899 0.5140 27 1 -0.3633 0.8901 0.5138 28 1 1.6523 2.1332 0.0004 29 1 4.5037 2.8302 -1.0289 30 1 3.7322 3.2724 0.5131 31 1 5.2771 2.3882 0.5121 32 1 8.2458 1.0002 -1.7383 33 1 8.4762 -0.6154 -0.9425 34 1 7.0863 -2.5619 -3.6000 35 1 6.7171 -2.0896 -6.3027 36 1 5.2038 -0.6170 -2.8284 37 1 6.0068 0.9991 -3.0287 38 1 4.5049 -2.8358 1.0108 39 1 3.7315 -3.2697 -0.5325 40 1 5.2763 -2.3856 -0.5287 41 1 1.6521 -2.1332 -0.0013 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000189547553.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:16 Heat of formation + Delta-G solvation = -54.064407 kcal Electronic energy + Delta-G solvation = -23509.094000 eV Core-core repulsion = 20160.905110 eV Total energy + Delta-G solvation = -3348.188891 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.72266 -40.37641 -38.84745 -35.91001 -34.64661 -34.48970 -34.13683 -30.71224 -28.95512 -28.39767 -27.74142 -26.93634 -26.73617 -22.95746 -21.84151 -21.47244 -20.03232 -19.35052 -18.20492 -17.50185 -17.35098 -16.98055 -16.00632 -15.86046 -15.57221 -15.23460 -15.11036 -14.80653 -14.43259 -14.21839 -14.02560 -14.01684 -13.97774 -13.76040 -13.65261 -13.42027 -13.29434 -12.83535 -12.77073 -12.66587 -12.43166 -12.23321 -12.22271 -12.18600 -11.96904 -11.42477 -10.98702 -10.66614 -10.28447 -9.67163 -9.60217 -9.55283 -8.28302 -6.45914 0.10809 0.33905 1.47877 1.48516 1.50963 1.58105 1.92009 2.40261 2.61834 2.93314 3.40102 3.68852 3.73580 3.77356 3.87179 4.10229 4.28579 4.34144 4.39582 4.42334 4.53315 4.57596 4.58502 4.62730 4.64223 4.72770 4.74244 4.86705 4.89049 4.90109 4.91807 5.00932 5.19866 5.23484 5.27443 5.41492 5.49895 5.58348 5.71426 5.88611 5.98731 6.59896 6.75939 7.03520 7.28101 7.46938 8.77967 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.019215 B = 0.004733 C = 0.004569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1456.811084 B = 5913.904247 C = 6127.388875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.064 4.064 3 C -0.130 4.130 4 C -0.059 4.059 5 C -0.116 4.116 6 C -0.152 4.152 7 C 0.589 3.411 8 O -0.597 6.597 9 N -0.626 5.626 10 C 0.104 3.896 11 C 0.225 3.775 12 O -0.584 6.584 13 C -0.554 4.554 14 H 0.076 0.924 15 C 0.034 3.966 16 N -0.918 5.918 17 Si 0.971 3.029 18 H -0.274 1.274 19 H -0.282 1.282 20 H -0.266 1.266 21 C 0.093 3.907 22 C -0.060 4.060 23 C -0.118 4.118 24 C -0.133 4.133 25 H 0.083 0.917 26 H 0.079 0.921 27 H 0.083 0.917 28 H 0.158 0.842 29 H 0.079 0.921 30 H 0.101 0.899 31 H 0.040 0.960 32 H 0.106 0.894 33 H 0.054 0.946 34 H 0.389 0.611 35 H 0.277 0.723 36 H 0.051 0.949 37 H 0.091 0.909 38 H 0.075 0.925 39 H 0.093 0.907 40 H 0.039 0.961 41 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.140 4.676 5.008 14.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.064 4.064 3 C -0.147 4.147 4 C -0.059 4.059 5 C -0.173 4.173 6 C -0.155 4.155 7 C 0.381 3.619 8 O -0.480 6.480 9 N -0.358 5.358 10 C -0.018 4.018 11 C 0.184 3.816 12 O -0.397 6.397 13 C -0.592 4.592 14 H 0.094 0.906 15 C -0.167 4.167 16 N -0.558 5.558 17 Si 0.796 3.204 18 H -0.199 1.199 19 H -0.208 1.208 20 H -0.191 1.191 21 C -0.030 4.030 22 C -0.060 4.060 23 C -0.175 4.175 24 C -0.150 4.150 25 H 0.102 0.898 26 H 0.098 0.902 27 H 0.102 0.898 28 H 0.175 0.825 29 H 0.097 0.903 30 H 0.120 0.880 31 H 0.060 0.940 32 H 0.124 0.876 33 H 0.073 0.927 34 H 0.245 0.755 35 H 0.087 0.913 36 H 0.070 0.930 37 H 0.109 0.891 38 H 0.094 0.906 39 H 0.112 0.888 40 H 0.058 0.942 41 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -12.838 4.664 6.215 15.007 hybrid contribution 0.776 -0.161 -1.232 1.465 sum -12.062 4.502 4.983 13.805 Atomic orbital electron populations 1.20880 0.87941 1.04288 1.03562 1.20461 0.98171 0.92167 0.95636 1.21133 0.91820 0.99461 1.02312 1.20106 0.94964 0.93579 0.97295 1.20862 0.99373 0.94007 1.03030 1.19660 0.91074 0.95528 1.09242 1.18213 0.87719 0.74621 0.81396 1.90684 1.70951 1.54448 1.31918 1.49768 1.10154 1.69796 1.06040 1.23405 0.83128 1.00794 0.94482 1.19754 0.90853 0.79544 0.91470 1.86026 1.91426 1.19615 1.42622 1.21622 1.24183 1.21905 0.91475 0.90557 1.25778 0.94596 0.94261 1.02045 1.69330 1.32687 1.26827 1.26973 0.85397 0.78656 0.78726 0.77614 1.19879 1.20760 1.19106 1.23968 1.01423 1.01080 0.76537 1.20067 0.95013 0.93585 0.97376 1.20837 0.99536 0.94575 1.02513 1.21105 0.91751 0.99606 1.02570 0.89849 0.90179 0.89794 0.82478 0.90289 0.88009 0.94049 0.87582 0.92733 0.75487 0.91301 0.93006 0.89097 0.90637 0.88835 0.94216 0.83159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.51 10.00 71.23 0.71 -0.80 16 2 C -0.06 -1.44 5.89 -19.81 -0.12 -1.56 16 3 C -0.13 -3.12 9.34 22.23 0.21 -2.91 16 4 C -0.06 -1.83 5.91 -19.61 -0.12 -1.95 16 5 C -0.12 -3.22 9.62 71.24 0.69 -2.54 16 6 C -0.15 -5.76 5.45 -20.09 -0.11 -5.87 16 7 C 0.59 26.37 4.44 86.79 0.39 26.75 16 8 O -0.60 -30.38 17.88 -3.88 -0.07 -30.45 16 9 N -0.63 -28.00 3.69 -862.16 -3.18 -31.18 16 10 C 0.10 4.71 8.03 83.18 0.67 5.38 16 11 C 0.23 11.00 1.58 -11.19 -0.02 10.98 16 12 O -0.58 -30.91 13.54 -148.98 -2.02 -32.93 16 13 C -0.55 -27.55 8.69 25.60 0.22 -27.33 16 14 H 0.08 3.64 7.81 -2.92 -0.02 3.61 16 15 C 0.03 1.65 5.40 84.65 0.46 2.11 16 16 N -0.92 -46.28 11.01 21.45 0.24 -46.05 16 17 Si 0.97 38.89 29.54 68.60 2.03 40.91 16 18 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 19 H -0.28 -11.13 7.11 99.48 0.71 -10.42 16 20 H -0.27 -10.30 7.11 99.48 0.71 -9.59 16 21 C 0.09 4.15 7.82 83.19 0.65 4.80 16 22 C -0.06 -2.03 5.91 -19.61 -0.12 -2.15 16 23 C -0.12 -4.02 9.62 71.23 0.69 -3.33 16 24 C -0.13 -3.47 9.34 22.23 0.21 -3.26 16 25 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 26 H 0.08 0.92 8.08 -2.39 -0.02 0.90 16 27 H 0.08 0.89 8.08 -2.38 -0.02 0.87 16 28 H 0.16 2.67 8.06 -2.91 -0.02 2.64 16 29 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 30 H 0.10 2.08 8.09 -2.38 -0.02 2.06 16 31 H 0.04 1.37 7.08 -2.39 -0.02 1.35 16 32 H 0.11 4.28 8.10 -2.39 -0.02 4.27 16 33 H 0.05 2.56 8.14 -2.39 -0.02 2.54 16 34 H 0.39 20.83 6.33 -74.06 -0.47 20.36 16 35 H 0.28 13.23 8.31 -92.71 -0.77 12.46 16 36 H 0.05 2.41 8.14 -2.38 -0.02 2.39 16 37 H 0.09 3.81 8.10 -2.39 -0.02 3.79 16 38 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 39 H 0.09 2.62 8.09 -2.39 -0.02 2.61 16 40 H 0.04 1.65 7.08 -2.39 -0.02 1.63 16 41 H 0.15 3.04 8.06 -2.91 -0.02 3.01 16 Total: -1.00 -63.59 345.98 1.97 -61.63 By element: Atomic # 1 Polarization: 39.19 SS G_CDS: 0.57 Total: 39.75 kcal Atomic # 6 Polarization: -6.08 SS G_CDS: 4.41 Total: -1.68 kcal Atomic # 7 Polarization: -74.29 SS G_CDS: -2.94 Total: -77.23 kcal Atomic # 8 Polarization: -61.29 SS G_CDS: -2.09 Total: -63.38 kcal Atomic # 14 Polarization: 38.89 SS G_CDS: 2.03 Total: 40.91 kcal Total: -63.59 1.97 -61.63 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189547553.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.561 kcal (2) G-P(sol) polarization free energy of solvation -63.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds