Wall clock time and date at job start Tue Mar 31 2020 07:09:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 112.85424 * 2 1 4 4 C 1.53785 * 113.61358 * 131.20062 * 2 1 3 5 5 H 1.09000 * 113.61691 * 25.33915 * 4 2 1 6 6 N 1.46504 * 113.61091 * 254.52651 * 4 2 1 7 7 C 1.34776 * 120.00249 * 156.52666 * 6 4 2 8 8 O 1.21551 * 119.99604 * 359.97438 * 7 6 4 9 9 C 1.47883 * 120.00216 * 179.97438 * 7 6 4 10 10 C 1.39918 * 120.02533 * 0.02562 * 9 7 6 11 11 C 1.38325 * 120.35886 * 179.97438 * 10 9 7 12 12 C 1.37759 * 120.41086 * 359.71925 * 11 10 9 13 13 C 1.40746 * 120.03970 * 0.55879 * 12 11 10 14 14 C 1.41434 * 120.18123 * 179.71206 * 13 12 11 15 15 H 1.08004 * 120.00336 * 154.45447 * 14 13 12 16 16 C 1.39941 * 119.99908 * 334.46756 * 14 13 12 17 17 N 1.30824 * 119.99558 * 334.64613 * 16 14 13 18 18 Si 1.86801 * 120.00213 * 154.65332 * 16 14 13 19 19 H 1.48495 * 109.47193 * 179.97438 * 18 16 14 20 20 H 1.48501 * 109.46845 * 299.99950 * 18 16 14 21 21 H 1.48500 * 109.46909 * 59.99612 * 18 16 14 22 22 C 1.38996 * 120.02386 * 180.02562 * 9 7 6 23 23 C 1.53771 * 87.17717 * 139.93526 * 4 2 1 24 24 C 1.53782 * 113.61231 * 228.69174 * 2 1 3 25 25 H 1.09004 * 113.61665 * 334.65424 * 24 2 1 26 26 O 1.42901 * 113.61521 * 105.47038 * 24 2 1 27 27 H 1.09002 * 109.46512 * 288.80459 * 1 2 3 28 28 H 1.08994 * 109.46646 * 48.80234 * 1 2 3 29 29 H 1.08996 * 109.46941 * 168.80691 * 1 2 3 30 30 H 1.08995 * 109.47106 * 191.20074 * 3 2 1 31 31 H 1.09000 * 109.46755 * 311.19639 * 3 2 1 32 32 H 1.08993 * 109.47221 * 71.19574 * 3 2 1 33 33 H 0.97001 * 119.99852 * 336.52691 * 6 4 2 34 34 H 1.07997 * 119.82235 * 359.96168 * 10 9 7 35 35 H 1.08002 * 119.79516 * 179.97438 * 11 10 9 36 36 H 1.08001 * 119.98077 * 180.29933 * 12 11 10 37 37 H 0.96998 * 120.00419 * 354.20992 * 17 16 14 38 38 H 1.08002 * 120.20567 * 0.02562 * 22 9 7 39 39 H 1.09004 * 113.61773 * 89.15440 * 23 4 2 40 40 H 1.08997 * 113.61950 * 220.05802 * 23 4 2 41 41 H 0.96699 * 113.99757 * 179.97438 * 26 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1243 1.4099 0.0000 4 6 2.1460 -0.9282 1.0602 5 1 1.4939 -1.7515 1.3518 6 7 2.7092 -0.2144 2.2090 7 6 2.8459 -0.8441 3.3927 8 8 2.5014 -2.0041 3.5073 9 6 3.4149 -0.1238 4.5521 10 6 3.8111 1.2117 4.4210 11 6 4.3437 1.8922 5.5011 12 6 4.4849 1.2652 6.7196 13 6 4.0974 -0.0796 6.8691 14 6 4.2467 -0.7280 8.1171 15 1 3.6125 -1.5648 8.3702 16 6 5.2161 -0.2853 9.0241 17 7 6.2767 0.3466 8.5912 18 14 4.9958 -0.5968 10.8527 19 1 6.1529 -0.0336 11.5937 20 1 3.7449 0.0541 11.3185 21 1 4.9146 -2.0588 11.0995 22 6 3.5566 -0.7730 5.7730 23 6 3.1927 -1.3161 0.0026 24 6 2.1460 -0.9301 -1.0585 25 1 1.4939 -1.7541 -1.3484 26 8 2.6953 -0.2361 -2.1804 27 1 -0.3632 0.3313 0.9729 28 1 -0.3632 0.6769 -0.7732 29 1 -0.3633 -1.0081 -0.1995 30 1 3.1943 1.3532 -0.1996 31 1 1.6416 2.0075 -0.7733 32 1 1.9602 1.8733 0.9727 33 1 2.9838 0.7115 2.1176 34 1 3.7007 1.7139 3.4713 35 1 4.6469 2.9228 5.3895 36 1 4.8971 1.8046 7.5595 37 1 6.4334 0.4348 7.6381 38 1 3.2525 -1.8039 5.8788 39 1 4.0725 -0.6726 0.0022 40 1 3.4431 -2.3769 0.0046 41 1 3.0845 -0.8159 -2.8493 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000190659335.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:09:16 Heat of formation + Delta-G solvation = -62.687174 kcal Electronic energy + Delta-G solvation = -22628.755844 eV Core-core repulsion = 19280.193042 eV Total energy + Delta-G solvation = -3348.562802 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.68184 -38.83724 -37.20479 -35.61036 -34.00437 -32.96882 -30.71840 -29.91757 -29.47518 -27.65297 -25.24438 -24.60324 -22.81808 -22.11623 -20.97421 -19.83996 -18.89735 -18.04229 -17.77026 -16.33693 -15.81358 -15.24497 -14.97463 -14.73762 -14.36051 -14.20715 -14.01794 -13.67867 -13.44339 -12.99284 -12.95186 -12.60310 -12.39633 -12.37957 -12.22094 -11.95804 -11.78726 -11.31789 -11.17945 -10.96827 -10.86766 -10.66016 -10.58039 -10.43284 -10.22269 -9.91421 -9.56892 -9.26925 -9.05232 -8.75131 -7.85128 -7.75261 -7.26045 -4.53268 2.01223 2.68000 3.13715 3.19374 3.34182 3.45893 3.68799 3.98017 4.01417 4.19563 4.44414 4.53170 4.63441 4.70913 5.01956 5.20093 5.30917 5.39017 5.45693 5.51301 5.58231 5.69292 5.78302 5.81052 5.84562 5.95091 6.00219 6.10818 6.15434 6.27007 6.64995 6.72827 6.76543 6.87670 7.15032 7.41453 7.49722 7.56178 7.63385 7.73741 7.89210 8.07983 8.15140 8.61636 8.72570 8.78171 9.98227 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.036211 B = 0.003216 C = 0.003131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 773.065122 B = 8704.267445 C = 8939.409106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.081 4.081 3 C -0.124 4.124 4 C 0.134 3.866 5 H 0.114 0.886 6 N -0.720 5.720 7 C 0.565 3.435 8 O -0.551 6.551 9 C -0.107 4.107 10 C -0.225 4.225 11 C -0.089 4.089 12 C -0.203 4.203 13 C 0.086 3.914 14 C -0.518 4.518 15 H 0.079 0.921 16 C 0.039 3.961 17 N -0.795 5.795 18 Si 1.066 2.934 19 H -0.273 1.273 20 H -0.274 1.274 21 H -0.275 1.275 22 C -0.155 4.155 23 C -0.183 4.183 24 C 0.087 3.913 25 H 0.084 0.916 26 O -0.554 6.554 27 H 0.062 0.938 28 H 0.059 0.941 29 H 0.057 0.943 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.058 0.942 33 H 0.402 0.598 34 H 0.091 0.909 35 H 0.096 0.904 36 H 0.109 0.891 37 H 0.299 0.701 38 H 0.108 0.892 39 H 0.093 0.907 40 H 0.073 0.927 41 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.982 0.951 -15.399 16.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.082 4.082 3 C -0.181 4.181 4 C 0.028 3.972 5 H 0.132 0.868 6 N -0.373 5.373 7 C 0.355 3.645 8 O -0.430 6.430 9 C -0.110 4.110 10 C -0.245 4.245 11 C -0.107 4.107 12 C -0.222 4.222 13 C 0.083 3.917 14 C -0.546 4.546 15 H 0.097 0.903 16 C -0.183 4.183 17 N -0.418 5.418 18 Si 0.889 3.111 19 H -0.198 1.198 20 H -0.199 1.199 21 H -0.200 1.200 22 C -0.175 4.175 23 C -0.222 4.222 24 C 0.027 3.973 25 H 0.101 0.899 26 O -0.359 6.359 27 H 0.081 0.919 28 H 0.078 0.922 29 H 0.076 0.924 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.077 0.923 33 H 0.240 0.760 34 H 0.109 0.891 35 H 0.114 0.886 36 H 0.127 0.873 37 H 0.113 0.887 38 H 0.127 0.873 39 H 0.111 0.889 40 H 0.092 0.908 41 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -5.705 0.958 -13.499 14.686 hybrid contribution -0.295 -0.343 -1.994 2.045 sum -6.001 0.616 -15.493 16.626 Atomic orbital electron populations 1.21763 0.93371 1.01984 1.02381 1.22396 0.95882 0.96183 0.93778 1.21403 1.01377 0.93734 1.01635 1.22182 0.95383 0.95524 0.84095 0.86768 1.45897 1.65311 1.16256 1.09856 1.18890 0.76779 0.86102 0.82702 1.90671 1.50549 1.17289 1.84500 1.19376 1.03931 0.94560 0.93176 1.20320 1.11679 0.94418 0.98116 1.20531 0.98838 0.97867 0.93495 1.21311 1.09140 0.94949 0.96848 1.17644 0.90458 0.91316 0.92237 1.20607 1.18067 1.15992 0.99900 0.90322 1.27057 0.91639 0.91771 1.07838 1.70467 1.22412 1.27850 1.21037 0.83621 0.77334 0.77607 0.72501 1.19818 1.19907 1.20029 1.21193 1.06424 0.98794 0.91080 1.24182 0.99035 1.02422 0.96555 1.23325 0.94851 0.94350 0.84757 0.89862 1.86514 1.79057 1.37328 1.32986 0.91858 0.92170 0.92366 0.91725 0.91747 0.92284 0.76031 0.89081 0.88599 0.87299 0.88740 0.87344 0.88878 0.90805 0.77728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.34 9.19 37.16 0.34 -0.99 16 2 C -0.08 -0.88 1.35 -153.69 -0.21 -1.08 16 3 C -0.12 -1.32 7.45 37.16 0.28 -1.04 16 4 C 0.13 1.79 3.67 -67.12 -0.25 1.54 16 5 H 0.11 1.66 7.46 -51.93 -0.39 1.27 16 6 N -0.72 -11.42 5.19 -53.95 -0.28 -11.70 16 7 C 0.56 11.66 7.77 -12.31 -0.10 11.56 16 8 O -0.55 -12.86 15.95 5.32 0.08 -12.77 16 9 C -0.11 -2.43 5.87 -105.04 -0.62 -3.04 16 10 C -0.23 -4.67 9.55 -38.92 -0.37 -5.04 16 11 C -0.09 -1.94 10.01 -39.72 -0.40 -2.33 16 12 C -0.20 -5.01 7.94 -38.81 -0.31 -5.32 16 13 C 0.09 2.27 5.29 -106.87 -0.57 1.70 16 14 C -0.52 -13.70 8.98 -37.73 -0.34 -14.04 16 15 H 0.08 2.04 7.96 -52.48 -0.42 1.62 16 16 C 0.04 0.97 4.94 -17.34 -0.09 0.89 16 17 N -0.79 -20.74 12.31 55.55 0.68 -20.06 16 18 Si 1.07 21.29 30.00 -169.99 -5.10 16.19 16 19 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 20 H -0.27 -5.28 7.11 56.52 0.40 -4.87 16 21 H -0.27 -5.24 7.11 56.52 0.40 -4.84 16 22 C -0.15 -3.92 9.34 -38.44 -0.36 -4.28 16 23 C -0.18 -2.10 7.38 -25.83 -0.19 -2.29 16 24 C 0.09 0.83 4.62 -25.82 -0.12 0.71 16 25 H 0.08 0.67 7.96 -51.93 -0.41 0.26 16 26 O -0.55 -5.10 12.77 -35.23 -0.45 -5.55 16 27 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 28 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.06 0.51 7.94 -51.93 -0.41 0.10 16 30 H 0.06 0.71 7.20 -51.93 -0.37 0.34 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 32 H 0.06 0.62 7.07 -51.93 -0.37 0.26 16 33 H 0.40 5.75 4.63 -40.82 -0.19 5.56 16 34 H 0.09 1.56 6.38 -52.49 -0.33 1.23 16 35 H 0.10 1.81 8.06 -52.49 -0.42 1.39 16 36 H 0.11 2.76 6.48 -52.49 -0.34 2.42 16 37 H 0.30 7.99 6.68 -40.82 -0.27 7.72 16 38 H 0.11 2.81 7.64 -52.49 -0.40 2.41 16 39 H 0.09 1.13 7.67 -51.93 -0.40 0.73 16 40 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.38 1.90 9.12 45.56 0.42 2.31 16 LS Contribution 335.72 15.07 5.06 5.06 Total: -1.00 -29.95 335.72 -8.09 -38.04 By element: Atomic # 1 Polarization: 18.65 SS G_CDS: -4.80 Total: 13.85 kcal Atomic # 6 Polarization: -19.78 SS G_CDS: -3.28 Total: -23.06 kcal Atomic # 7 Polarization: -32.16 SS G_CDS: 0.40 Total: -31.75 kcal Atomic # 8 Polarization: -17.96 SS G_CDS: -0.37 Total: -18.32 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.10 Total: 16.19 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -29.95 -8.09 -38.04 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190659335.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.648 kcal (2) G-P(sol) polarization free energy of solvation -29.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds