Wall clock time and date at job start Tue Mar 31 2020 07:09:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 112.85424 * 2 1 4 4 C 1.53785 * 113.61358 * 131.20062 * 2 1 3 5 5 H 1.09000 * 113.61691 * 25.33915 * 4 2 1 6 6 N 1.46504 * 113.61091 * 254.52651 * 4 2 1 7 7 C 1.34776 * 120.00249 * 156.52666 * 6 4 2 8 8 O 1.21551 * 119.99604 * 359.97438 * 7 6 4 9 9 C 1.47883 * 120.00216 * 179.97438 * 7 6 4 10 10 C 1.39918 * 120.02533 * 0.02562 * 9 7 6 11 11 C 1.38325 * 120.35886 * 179.97438 * 10 9 7 12 12 C 1.37759 * 120.41086 * 359.71925 * 11 10 9 13 13 C 1.40746 * 120.03970 * 0.55879 * 12 11 10 14 14 C 1.41434 * 120.18123 * 179.71206 * 13 12 11 15 15 H 1.08004 * 120.00336 * 154.45447 * 14 13 12 16 16 C 1.39941 * 119.99908 * 334.46756 * 14 13 12 17 17 N 1.30824 * 119.99558 * 334.64613 * 16 14 13 18 18 Si 1.86801 * 120.00213 * 154.65332 * 16 14 13 19 19 H 1.48495 * 109.47193 * 179.97438 * 18 16 14 20 20 H 1.48501 * 109.46845 * 299.99950 * 18 16 14 21 21 H 1.48500 * 109.46909 * 59.99612 * 18 16 14 22 22 C 1.38996 * 120.02386 * 180.02562 * 9 7 6 23 23 C 1.53771 * 87.17717 * 139.93526 * 4 2 1 24 24 C 1.53782 * 113.61231 * 228.69174 * 2 1 3 25 25 H 1.09004 * 113.61665 * 334.65424 * 24 2 1 26 26 O 1.42901 * 113.61521 * 105.47038 * 24 2 1 27 27 H 1.09002 * 109.46512 * 288.80459 * 1 2 3 28 28 H 1.08994 * 109.46646 * 48.80234 * 1 2 3 29 29 H 1.08996 * 109.46941 * 168.80691 * 1 2 3 30 30 H 1.08995 * 109.47106 * 191.20074 * 3 2 1 31 31 H 1.09000 * 109.46755 * 311.19639 * 3 2 1 32 32 H 1.08993 * 109.47221 * 71.19574 * 3 2 1 33 33 H 0.97001 * 119.99852 * 336.52691 * 6 4 2 34 34 H 1.07997 * 119.82235 * 359.96168 * 10 9 7 35 35 H 1.08002 * 119.79516 * 179.97438 * 11 10 9 36 36 H 1.08001 * 119.98077 * 180.29933 * 12 11 10 37 37 H 0.96998 * 120.00419 * 354.20992 * 17 16 14 38 38 H 1.08002 * 120.20567 * 0.02562 * 22 9 7 39 39 H 1.09004 * 113.61773 * 89.15440 * 23 4 2 40 40 H 1.08997 * 113.61950 * 220.05802 * 23 4 2 41 41 H 0.96699 * 113.99757 * 179.97438 * 26 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1243 1.4099 0.0000 4 6 2.1460 -0.9282 1.0602 5 1 1.4939 -1.7515 1.3518 6 7 2.7092 -0.2144 2.2090 7 6 2.8459 -0.8441 3.3927 8 8 2.5014 -2.0041 3.5073 9 6 3.4149 -0.1238 4.5521 10 6 3.8111 1.2117 4.4210 11 6 4.3437 1.8922 5.5011 12 6 4.4849 1.2652 6.7196 13 6 4.0974 -0.0796 6.8691 14 6 4.2467 -0.7280 8.1171 15 1 3.6125 -1.5648 8.3702 16 6 5.2161 -0.2853 9.0241 17 7 6.2767 0.3466 8.5912 18 14 4.9958 -0.5968 10.8527 19 1 6.1529 -0.0336 11.5937 20 1 3.7449 0.0541 11.3185 21 1 4.9146 -2.0588 11.0995 22 6 3.5566 -0.7730 5.7730 23 6 3.1927 -1.3161 0.0026 24 6 2.1460 -0.9301 -1.0585 25 1 1.4939 -1.7541 -1.3484 26 8 2.6953 -0.2361 -2.1804 27 1 -0.3632 0.3313 0.9729 28 1 -0.3632 0.6769 -0.7732 29 1 -0.3633 -1.0081 -0.1995 30 1 3.1943 1.3532 -0.1996 31 1 1.6416 2.0075 -0.7733 32 1 1.9602 1.8733 0.9727 33 1 2.9838 0.7115 2.1176 34 1 3.7007 1.7139 3.4713 35 1 4.6469 2.9228 5.3895 36 1 4.8971 1.8046 7.5595 37 1 6.4334 0.4348 7.6381 38 1 3.2525 -1.8039 5.8788 39 1 4.0725 -0.6726 0.0022 40 1 3.4431 -2.3769 0.0046 41 1 3.0845 -0.8159 -2.8493 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000190659335.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:09:16 Heat of formation + Delta-G solvation = -82.537192 kcal Electronic energy + Delta-G solvation = -22629.616605 eV Core-core repulsion = 19280.193042 eV Total energy + Delta-G solvation = -3349.423563 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.78559 -40.35435 -38.97619 -36.47797 -35.86202 -34.33894 -31.80274 -31.74910 -31.11002 -28.45495 -27.13063 -25.91271 -23.83104 -23.50236 -22.80048 -21.48338 -20.29066 -19.45605 -18.57740 -17.95087 -17.14273 -16.62951 -16.23271 -16.08861 -15.90965 -15.76777 -15.35834 -15.34724 -14.59666 -14.32119 -14.27066 -13.90356 -13.84767 -13.53459 -13.27211 -13.09447 -13.03963 -12.76492 -12.63332 -12.41423 -12.14202 -12.08022 -11.93903 -11.74977 -11.43077 -11.40220 -11.01377 -10.88425 -10.66366 -10.11437 -9.73183 -9.61809 -9.22111 -6.54173 0.18803 0.82270 1.50356 1.57639 1.80112 1.98250 2.12448 2.31948 2.66764 3.22197 3.28995 3.45978 3.60388 3.75792 3.80133 3.92903 4.20344 4.23382 4.36687 4.45224 4.45896 4.60427 4.70170 4.75165 4.86431 4.89256 4.91793 4.98746 5.00326 5.02953 5.08513 5.24419 5.33553 5.37223 5.50703 5.62143 5.64867 5.70555 5.78988 6.11607 6.20732 6.51535 6.67877 6.82084 6.92042 7.17118 7.99589 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.036211 B = 0.003216 C = 0.003131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 773.065122 B = 8704.267445 C = 8939.409106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.077 4.077 3 C -0.125 4.125 4 C 0.117 3.883 5 H 0.100 0.900 6 N -0.698 5.698 7 C 0.563 3.437 8 O -0.586 6.586 9 C -0.113 4.113 10 C -0.200 4.200 11 C -0.087 4.087 12 C -0.213 4.213 13 C 0.063 3.937 14 C -0.560 4.560 15 H 0.067 0.933 16 C 0.007 3.993 17 N -0.813 5.813 18 Si 1.117 2.883 19 H -0.267 1.267 20 H -0.262 1.262 21 H -0.262 1.262 22 C -0.187 4.187 23 C -0.181 4.181 24 C 0.103 3.897 25 H 0.104 0.896 26 O -0.563 6.563 27 H 0.052 0.948 28 H 0.072 0.928 29 H 0.066 0.934 30 H 0.060 0.940 31 H 0.073 0.927 32 H 0.058 0.942 33 H 0.412 0.588 34 H 0.138 0.862 35 H 0.135 0.865 36 H 0.098 0.902 37 H 0.284 0.716 38 H 0.086 0.914 39 H 0.089 0.911 40 H 0.072 0.928 41 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.506 2.459 -17.611 18.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.078 4.078 3 C -0.182 4.182 4 C 0.012 3.988 5 H 0.118 0.882 6 N -0.350 5.350 7 C 0.353 3.647 8 O -0.467 6.467 9 C -0.116 4.116 10 C -0.220 4.220 11 C -0.105 4.105 12 C -0.233 4.233 13 C 0.060 3.940 14 C -0.588 4.588 15 H 0.085 0.915 16 C -0.209 4.209 17 N -0.436 5.436 18 Si 0.934 3.066 19 H -0.191 1.191 20 H -0.187 1.187 21 H -0.187 1.187 22 C -0.207 4.207 23 C -0.220 4.220 24 C 0.043 3.957 25 H 0.121 0.879 26 O -0.371 6.371 27 H 0.071 0.929 28 H 0.091 0.909 29 H 0.085 0.915 30 H 0.080 0.920 31 H 0.091 0.909 32 H 0.077 0.923 33 H 0.251 0.749 34 H 0.156 0.844 35 H 0.153 0.847 36 H 0.116 0.884 37 H 0.096 0.904 38 H 0.104 0.896 39 H 0.107 0.893 40 H 0.091 0.909 41 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges -6.231 2.488 -15.790 17.157 hybrid contribution -0.178 -0.752 -1.577 1.756 sum -6.409 1.736 -17.367 18.593 Atomic orbital electron populations 1.21770 0.92481 1.02905 1.02287 1.22388 0.96581 0.96051 0.92755 1.21419 1.01242 0.93591 1.01962 1.22479 0.96537 0.96157 0.83650 0.88174 1.45743 1.63754 1.16499 1.09014 1.18649 0.76863 0.85654 0.83580 1.90654 1.52217 1.18720 1.85158 1.19688 1.03258 0.95599 0.93033 1.20819 1.08259 0.93261 0.99655 1.20960 0.97629 0.99616 0.92329 1.21363 1.09447 0.94431 0.98055 1.17915 0.91133 0.92347 0.92558 1.20780 1.19536 1.17093 1.01441 0.91488 1.28424 0.90436 0.90503 1.11543 1.70583 1.23208 1.29871 1.19937 0.83007 0.77802 0.78347 0.67478 1.19120 1.18684 1.18655 1.21144 1.08670 0.98301 0.92605 1.24167 0.98930 1.02340 0.96589 1.23171 0.93834 0.94185 0.84482 0.87877 1.86466 1.79190 1.38252 1.33188 0.92857 0.90883 0.91500 0.92046 0.90851 0.92302 0.74889 0.84421 0.84698 0.88392 0.90353 0.89576 0.89278 0.90885 0.75459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.29 9.19 71.98 0.66 -1.63 16 2 C -0.08 -1.44 1.35 -51.65 -0.07 -1.51 16 3 C -0.12 -2.25 7.45 71.98 0.54 -1.71 16 4 C 0.12 2.92 3.67 45.51 0.17 3.08 16 5 H 0.10 2.84 7.46 -2.39 -0.02 2.82 16 6 N -0.70 -20.93 5.19 -442.87 -2.30 -23.23 16 7 C 0.56 23.12 7.77 86.80 0.67 23.79 16 8 O -0.59 -27.98 15.95 -3.87 -0.06 -28.04 16 9 C -0.11 -5.09 5.87 -20.13 -0.12 -5.20 16 10 C -0.20 -7.79 9.55 22.70 0.22 -7.58 16 11 C -0.09 -3.62 10.01 22.18 0.22 -3.40 16 12 C -0.21 -10.66 7.94 22.77 0.18 -10.48 16 13 C 0.06 3.45 5.29 -21.32 -0.11 3.34 16 14 C -0.56 -31.25 8.98 23.47 0.21 -31.04 16 15 H 0.07 3.73 7.96 -2.91 -0.02 3.71 16 16 C 0.01 0.37 4.94 85.26 0.42 0.79 16 17 N -0.81 -43.71 12.31 21.83 0.27 -43.44 16 18 Si 1.12 43.57 30.00 68.60 2.06 45.63 16 19 H -0.27 -10.04 7.11 99.48 0.71 -9.33 16 20 H -0.26 -9.66 7.11 99.48 0.71 -8.95 16 21 H -0.26 -9.58 7.11 99.48 0.71 -8.87 16 22 C -0.19 -9.90 9.34 23.01 0.21 -9.68 16 23 C -0.18 -3.79 7.38 31.18 0.23 -3.56 16 24 C 0.10 1.65 4.62 31.18 0.14 1.79 16 25 H 0.10 1.29 7.96 -2.39 -0.02 1.27 16 26 O -0.56 -8.34 12.77 -148.98 -1.90 -10.25 16 27 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 28 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 29 H 0.07 1.00 7.94 -2.39 -0.02 0.98 16 30 H 0.06 1.15 7.20 -2.39 -0.02 1.13 16 31 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.06 1.05 7.07 -2.39 -0.02 1.03 16 33 H 0.41 10.52 4.63 -92.71 -0.43 10.09 16 34 H 0.14 4.06 6.38 -2.91 -0.02 4.04 16 35 H 0.14 4.56 8.06 -2.91 -0.02 4.53 16 36 H 0.10 5.07 6.48 -2.91 -0.02 5.05 16 37 H 0.28 15.80 6.68 -92.71 -0.62 15.18 16 38 H 0.09 4.82 7.64 -2.91 -0.02 4.79 16 39 H 0.09 1.95 7.67 -2.39 -0.02 1.93 16 40 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 41 H 0.40 2.55 9.12 -74.06 -0.68 1.87 16 Total: -1.00 -68.06 335.72 1.75 -66.32 By element: Atomic # 1 Polarization: 35.89 SS G_CDS: 0.10 Total: 35.99 kcal Atomic # 6 Polarization: -46.57 SS G_CDS: 3.58 Total: -42.99 kcal Atomic # 7 Polarization: -64.63 SS G_CDS: -2.03 Total: -66.67 kcal Atomic # 8 Polarization: -36.32 SS G_CDS: -1.96 Total: -38.29 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.06 Total: 45.63 kcal Total: -68.06 1.75 -66.32 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190659335.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.221 kcal (2) G-P(sol) polarization free energy of solvation -68.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds