Wall clock time and date at job start Tue Mar 31 2020 07:09:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 112.90861 * 2 1 4 4 C 1.54051 * 113.61413 * 228.63332 * 2 1 3 5 5 H 1.09003 * 113.69649 * 25.48907 * 4 2 1 6 6 O 1.42895 * 113.61541 * 156.37962 * 4 2 1 7 7 C 1.53777 * 87.07892 * 270.92917 * 4 2 1 8 8 C 1.53774 * 113.61277 * 131.25369 * 2 1 3 9 9 H 1.09009 * 113.61493 * 203.66607 * 8 2 1 10 10 N 1.46501 * 113.61704 * 334.48108 * 8 2 1 11 11 C 1.34780 * 120.00474 * 203.47192 * 10 8 2 12 12 O 1.21544 * 119.99485 * 359.97438 * 11 10 8 13 13 C 1.47879 * 119.99872 * 180.02562 * 11 10 8 14 14 C 1.39922 * 120.02891 * 359.97438 * 13 11 10 15 15 C 1.38330 * 120.35716 * 179.97438 * 14 13 11 16 16 C 1.37753 * 120.41330 * 0.02562 * 15 14 13 17 17 C 1.40749 * 120.04048 * 359.97438 * 16 15 14 18 18 C 1.41434 * 120.17384 * 180.02562 * 17 16 15 19 19 H 1.08003 * 119.99731 * 150.20139 * 18 17 16 20 20 C 1.39930 * 120.00476 * 330.19567 * 18 17 16 21 21 N 1.30828 * 120.00059 * 161.72575 * 20 18 17 22 22 Si 1.86803 * 120.00037 * 341.72497 * 20 18 17 23 23 H 1.48496 * 109.47026 * 95.40898 * 22 20 18 24 24 H 1.48496 * 109.47320 * 215.41124 * 22 20 18 25 25 H 1.48500 * 109.47121 * 335.41519 * 22 20 18 26 26 C 1.38999 * 120.02377 * 179.73041 * 13 11 10 27 27 H 1.08994 * 109.47142 * 288.75111 * 1 2 3 28 28 H 1.09013 * 109.46925 * 48.74690 * 1 2 3 29 29 H 1.09000 * 109.47256 * 168.74397 * 1 2 3 30 30 H 1.08999 * 109.47102 * 191.24950 * 3 2 1 31 31 H 1.08997 * 109.47060 * 311.25043 * 3 2 1 32 32 H 1.09000 * 109.46771 * 71.25110 * 3 2 1 33 33 H 0.96698 * 114.00411 * 176.99721 * 6 4 2 34 34 H 1.08994 * 113.61346 * 220.02266 * 7 4 2 35 35 H 1.09002 * 113.69084 * 89.12634 * 7 4 2 36 36 H 0.97002 * 119.99518 * 23.47543 * 10 8 2 37 37 H 1.07996 * 119.81656 * 359.97438 * 14 13 11 38 38 H 1.08005 * 119.79055 * 180.02562 * 15 14 13 39 39 H 1.08001 * 119.97404 * 180.02562 * 16 15 14 40 40 H 0.97005 * 119.99518 * 180.02562 * 21 20 18 41 41 H 1.08000 * 120.19873 * 359.97438 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1256 1.4094 0.0000 4 6 2.1471 -0.9328 -1.0593 5 1 1.4970 -1.1143 -1.9153 6 8 3.4755 -0.5682 -1.4390 7 6 2.0929 -2.0444 0.0019 8 6 2.1460 -0.9291 1.0593 9 1 3.1591 -0.6499 1.3490 10 7 1.2711 -1.1689 2.2097 11 6 1.7997 -1.5403 3.3926 12 8 3.0022 -1.6766 3.5047 13 6 0.9165 -1.7828 4.5535 14 6 -0.4680 -1.6265 4.4248 15 6 -1.3006 -1.8521 5.5062 16 6 -0.7768 -2.2327 6.7221 17 6 0.6134 -2.3950 6.8707 18 6 1.1542 -2.7862 8.1176 19 1 2.0686 -3.3598 8.1536 20 6 0.5047 -2.4300 9.3048 21 7 0.7761 -3.0662 10.4152 22 14 -0.7500 -1.0460 9.3040 23 1 -2.1138 -1.6144 9.1548 24 1 -0.6627 -0.2980 10.5838 25 1 -0.4709 -0.1256 8.1726 26 6 1.4606 -2.1713 5.7722 27 1 -0.3633 0.3303 0.9731 28 1 -0.3633 0.6777 -0.7727 29 1 -0.3634 -1.0079 -0.2006 30 1 3.1954 1.3517 -0.2005 31 1 1.6429 2.0078 -0.7726 32 1 1.9627 1.8726 0.9732 33 1 3.8853 -1.1761 -2.0695 34 1 2.9713 -2.6897 0.0035 35 1 1.1570 -2.6032 0.0034 36 1 0.3114 -1.0604 2.1200 37 1 -0.8888 -1.3280 3.4760 38 1 -2.3680 -1.7291 5.3965 39 1 -1.4334 -2.4074 7.5616 40 1 0.3255 -2.8195 11.2381 41 1 2.5282 -2.2974 5.8749 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000190659349.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:09:19 Heat of formation + Delta-G solvation = -52.795054 kcal Electronic energy + Delta-G solvation = -22717.492480 eV Core-core repulsion = 19369.358633 eV Total energy + Delta-G solvation = -3348.133847 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.72125 -38.89227 -37.20933 -35.57946 -33.75390 -32.99356 -30.85058 -30.32566 -29.92179 -27.65831 -25.47933 -24.66186 -22.86213 -22.40164 -20.70509 -19.97513 -18.94056 -17.89728 -17.31890 -16.34563 -15.97303 -15.59938 -15.39275 -14.71336 -14.43983 -14.25184 -13.98826 -13.59445 -13.58087 -12.92263 -12.77806 -12.69969 -12.66323 -12.48486 -12.28667 -12.02728 -11.89196 -11.60120 -11.21480 -11.05970 -11.00679 -10.78078 -10.54329 -10.27789 -10.01491 -9.96171 -9.72479 -9.41124 -9.12591 -8.74714 -7.87727 -7.76951 -7.01573 -4.56308 1.91080 2.50589 3.04531 3.16804 3.25198 3.53312 3.59778 3.71716 3.92364 4.23159 4.40715 4.46984 4.70460 4.81563 4.99082 5.16502 5.31590 5.34933 5.43149 5.43854 5.51666 5.69405 5.73027 5.80459 5.85118 5.86614 6.00868 6.05016 6.13251 6.30876 6.39682 6.65248 6.66471 6.77447 6.97581 7.20500 7.39812 7.39983 7.48747 7.74293 7.81183 8.02135 8.27265 8.52323 8.69010 8.74148 10.00578 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.032609 B = 0.003543 C = 0.003395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.464761 B = 7902.124759 C = 8245.767602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.085 4.085 3 C -0.133 4.133 4 C 0.089 3.911 5 H 0.071 0.929 6 O -0.547 6.547 7 C -0.186 4.186 8 C 0.141 3.859 9 H 0.116 0.884 10 N -0.724 5.724 11 C 0.563 3.437 12 O -0.547 6.547 13 C -0.109 4.109 14 C -0.217 4.217 15 C -0.083 4.083 16 C -0.223 4.223 17 C 0.082 3.918 18 C -0.442 4.442 19 H 0.094 0.906 20 C 0.083 3.917 21 N -0.803 5.803 22 Si 0.911 3.089 23 H -0.269 1.269 24 H -0.289 1.289 25 H -0.244 1.244 26 C -0.136 4.136 27 H 0.068 0.932 28 H 0.065 0.935 29 H 0.062 0.938 30 H 0.070 0.930 31 H 0.054 0.946 32 H 0.056 0.944 33 H 0.380 0.620 34 H 0.077 0.923 35 H 0.091 0.909 36 H 0.400 0.600 37 H 0.094 0.906 38 H 0.099 0.901 39 H 0.103 0.897 40 H 0.286 0.714 41 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.036 5.267 -19.624 20.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.086 4.086 3 C -0.190 4.190 4 C 0.029 3.971 5 H 0.088 0.912 6 O -0.352 6.352 7 C -0.225 4.225 8 C 0.036 3.964 9 H 0.134 0.866 10 N -0.377 5.377 11 C 0.354 3.646 12 O -0.425 6.425 13 C -0.112 4.112 14 C -0.237 4.237 15 C -0.101 4.101 16 C -0.242 4.242 17 C 0.079 3.921 18 C -0.470 4.470 19 H 0.112 0.888 20 C -0.136 4.136 21 N -0.427 5.427 22 Si 0.737 3.263 23 H -0.195 1.195 24 H -0.216 1.216 25 H -0.167 1.167 26 C -0.156 4.156 27 H 0.087 0.913 28 H 0.084 0.916 29 H 0.081 0.919 30 H 0.089 0.911 31 H 0.073 0.927 32 H 0.075 0.925 33 H 0.227 0.773 34 H 0.095 0.905 35 H 0.109 0.891 36 H 0.237 0.763 37 H 0.112 0.888 38 H 0.117 0.883 39 H 0.121 0.879 40 H 0.097 0.903 41 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -2.265 5.590 -18.821 19.764 hybrid contribution -1.010 -0.003 -0.205 1.030 sum -3.274 5.587 -19.026 20.098 Atomic orbital electron populations 1.21616 0.92420 1.02424 1.02822 1.22392 0.95754 0.95796 0.94620 1.21596 1.01827 0.94081 1.01479 1.22691 0.84302 0.95165 0.94927 0.91157 1.86448 1.28332 1.53882 1.66537 1.24133 1.03283 0.97862 0.97205 1.22436 0.95962 0.94416 0.83619 0.86588 1.45991 1.10553 1.71005 1.10153 1.18831 0.87952 0.75115 0.82745 1.90692 1.15570 1.51798 1.84457 1.19450 0.93038 1.05475 0.93206 1.20362 0.92148 1.13221 0.98009 1.20506 0.97646 0.98657 0.93290 1.21172 0.95197 1.10868 0.96968 1.17697 0.91079 0.89853 0.93441 1.19528 1.09605 1.29318 0.88592 0.88833 1.26168 0.95900 0.96572 0.94957 1.69695 1.37096 1.34860 1.01052 0.86308 0.79978 0.81723 0.78266 1.19547 1.21637 1.16688 1.21279 0.99064 1.03411 0.91837 0.91275 0.91622 0.91905 0.91128 0.92740 0.92499 0.77262 0.90467 0.89068 0.76287 0.88759 0.88297 0.87885 0.90303 0.86666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.14 8.07 37.16 0.30 -0.84 16 2 C -0.08 -0.87 1.35 -153.55 -0.21 -1.08 16 3 C -0.13 -1.40 9.05 37.16 0.34 -1.07 16 4 C 0.09 0.81 4.70 -25.78 -0.12 0.69 16 5 H 0.07 0.51 8.10 -51.93 -0.42 0.09 16 6 O -0.55 -5.09 12.14 -35.23 -0.43 -5.51 16 7 C -0.19 -2.01 7.36 -25.92 -0.19 -2.20 16 8 C 0.14 1.88 3.60 -67.12 -0.24 1.64 16 9 H 0.12 1.86 7.46 -51.92 -0.39 1.47 16 10 N -0.72 -10.94 5.19 -53.95 -0.28 -11.22 16 11 C 0.56 11.25 7.77 -12.31 -0.10 11.16 16 12 O -0.55 -12.62 15.95 5.33 0.08 -12.53 16 13 C -0.11 -2.34 5.87 -105.04 -0.62 -2.95 16 14 C -0.22 -4.19 9.55 -38.92 -0.37 -4.57 16 15 C -0.08 -1.68 10.01 -39.72 -0.40 -2.08 16 16 C -0.22 -5.19 7.17 -38.81 -0.28 -5.46 16 17 C 0.08 2.08 5.10 -106.87 -0.55 1.54 16 18 C -0.44 -11.94 9.57 -37.73 -0.36 -12.30 16 19 H 0.09 2.66 8.06 -52.48 -0.42 2.23 16 20 C 0.08 2.16 5.40 -17.35 -0.09 2.07 16 21 N -0.80 -21.21 13.93 55.55 0.77 -20.43 16 22 Si 0.91 20.37 24.52 -169.99 -4.17 16.21 16 23 H -0.27 -5.77 6.71 56.52 0.38 -5.39 16 24 H -0.29 -6.24 7.11 56.52 0.40 -5.84 16 25 H -0.24 -5.59 6.86 56.52 0.39 -5.20 16 26 C -0.14 -3.30 9.34 -38.44 -0.36 -3.66 16 27 H 0.07 0.61 7.07 -51.93 -0.37 0.24 16 28 H 0.06 0.47 8.14 -51.92 -0.42 0.04 16 29 H 0.06 0.47 7.34 -51.93 -0.38 0.09 16 30 H 0.07 0.82 6.97 -51.93 -0.36 0.46 16 31 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 32 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.38 1.89 9.12 45.56 0.42 2.31 16 34 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 35 H 0.09 0.91 7.66 -51.93 -0.40 0.52 16 36 H 0.40 5.17 4.63 -40.82 -0.19 4.98 16 37 H 0.09 1.46 6.38 -52.49 -0.33 1.12 16 38 H 0.10 1.69 8.06 -52.48 -0.42 1.27 16 39 H 0.10 2.38 4.72 -52.49 -0.25 2.13 16 40 H 0.29 6.81 8.30 -40.82 -0.34 6.48 16 41 H 0.12 2.87 7.64 -52.49 -0.40 2.47 16 LS Contribution 330.39 15.07 4.98 4.98 Total: -1.00 -30.36 330.39 -7.06 -37.42 By element: Atomic # 1 Polarization: 14.98 SS G_CDS: -4.78 Total: 10.20 kcal Atomic # 6 Polarization: -15.86 SS G_CDS: -3.24 Total: -19.11 kcal Atomic # 7 Polarization: -32.14 SS G_CDS: 0.49 Total: -31.65 kcal Atomic # 8 Polarization: -17.70 SS G_CDS: -0.34 Total: -18.04 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -4.17 Total: 16.21 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -30.36 -7.06 -37.42 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190659349.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.377 kcal (2) G-P(sol) polarization free energy of solvation -30.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds