Wall clock time and date at job start Tue Mar 31 2020 07:09:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52997 * 112.90654 * 2 1 4 4 C 1.53779 * 113.61627 * 228.74482 * 2 1 3 5 5 H 1.08992 * 113.61553 * 105.38452 * 4 2 1 6 6 O 1.42896 * 113.61449 * 334.56550 * 4 2 1 7 7 C 1.53780 * 87.08146 * 220.01766 * 4 2 1 8 8 C 1.53781 * 87.08267 * 25.43536 * 7 4 2 9 9 H 1.08997 * 113.69508 * 89.12709 * 8 7 4 10 10 N 1.46504 * 113.61668 * 220.02112 * 8 7 4 11 11 C 1.34769 * 119.99848 * 252.49578 * 10 8 7 12 12 O 1.21547 * 120.00467 * 359.97438 * 11 10 8 13 13 C 1.47888 * 119.99912 * 179.97438 * 11 10 8 14 14 C 1.39919 * 120.02508 * 359.97438 * 13 11 10 15 15 C 1.38326 * 120.35857 * 179.97438 * 14 13 11 16 16 C 1.37756 * 120.41373 * 359.97438 * 15 14 13 17 17 C 1.40750 * 120.03920 * 359.97438 * 16 15 14 18 18 C 1.41439 * 120.17853 * 180.02562 * 17 16 15 19 19 H 1.07992 * 119.99795 * 334.94761 * 18 17 16 20 20 C 1.39930 * 119.99694 * 154.94612 * 18 17 16 21 21 N 1.30829 * 120.00422 * 342.58707 * 20 18 17 22 22 Si 1.86803 * 119.99910 * 162.58811 * 20 18 17 23 23 H 1.48498 * 109.46928 * 359.97438 * 22 20 18 24 24 H 1.48501 * 109.47205 * 119.99790 * 22 20 18 25 25 H 1.48498 * 109.47269 * 240.00052 * 22 20 18 26 26 C 1.38996 * 120.02390 * 179.97438 * 13 11 10 27 27 H 1.09000 * 109.46919 * 288.74816 * 1 2 3 28 28 H 1.08997 * 109.46832 * 48.75223 * 1 2 3 29 29 H 1.09000 * 109.46627 * 168.74991 * 1 2 3 30 30 H 1.09005 * 109.47409 * 191.25191 * 3 2 1 31 31 H 1.09003 * 109.47025 * 311.24599 * 3 2 1 32 32 H 1.08995 * 109.47485 * 71.24597 * 3 2 1 33 33 H 0.96701 * 114.00461 * 179.97438 * 6 4 2 34 34 H 1.08991 * 113.61870 * 270.88535 * 7 4 2 35 35 H 1.09000 * 113.61238 * 139.98010 * 7 4 2 36 36 H 0.96996 * 119.99747 * 72.48949 * 10 8 7 37 37 H 1.07995 * 119.82220 * 0.25715 * 14 13 11 38 38 H 1.08007 * 119.79734 * 180.02562 * 15 14 13 39 39 H 1.07998 * 119.98332 * 180.02562 * 16 15 14 40 40 H 0.97007 * 120.00278 * 180.02562 * 21 20 18 41 41 H 1.07995 * 120.20621 * 0.04018 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.1256 1.4093 0.0000 4 6 2.1461 -0.9291 -1.0593 5 1 2.5638 -0.3991 -1.9151 6 8 1.2921 -2.0100 -1.4388 7 6 3.1924 -1.3135 0.0001 8 6 2.1461 -0.9290 1.0595 9 1 1.4940 -1.7527 1.3502 10 7 2.7092 -0.2162 2.2089 11 6 2.8173 -0.8375 3.4000 12 8 2.4473 -1.9889 3.5208 13 6 3.3862 -0.1181 4.5602 14 6 3.8128 1.2072 4.4217 15 6 4.3455 1.8867 5.5024 16 6 4.4617 1.2672 6.7273 17 6 4.0369 -0.0652 6.8860 18 6 4.1544 -0.7040 8.1425 19 1 4.8979 -0.3697 8.8508 20 6 3.3072 -1.7692 8.4677 21 7 2.2060 -1.9604 7.7877 22 14 3.7486 -2.9182 9.8728 23 1 5.0356 -2.4896 10.4770 24 1 2.6792 -2.8749 10.9022 25 1 3.8822 -4.3039 9.3558 26 6 3.4975 -0.7582 5.7890 27 1 -0.3633 0.3303 0.9731 28 1 -0.3633 0.6775 -0.7727 29 1 -0.3632 -1.0079 -0.2005 30 1 3.1955 1.3517 -0.2005 31 1 1.6429 2.0077 -0.7727 32 1 1.9627 1.8726 0.9730 33 1 1.6738 -2.5978 -2.1051 34 1 4.0711 -0.6687 0.0002 35 1 3.4444 -2.3740 0.0002 36 1 3.0042 0.7027 2.1126 37 1 3.7215 1.7038 3.4670 38 1 4.6716 2.9097 5.3854 39 1 4.8782 1.8044 7.5665 40 1 1.6185 -2.6986 8.0134 41 1 3.1701 -1.7813 5.9003 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000190659367.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:09:21 Heat of formation + Delta-G solvation = -53.965669 kcal Electronic energy + Delta-G solvation = -22854.552675 eV Core-core repulsion = 19506.368066 eV Total energy + Delta-G solvation = -3348.184609 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.59382 -38.64741 -36.90534 -35.46748 -33.76977 -32.78573 -30.62650 -29.85802 -29.41543 -27.55628 -25.43479 -24.58200 -22.70751 -21.97790 -20.93454 -19.54586 -18.70860 -17.74094 -17.33188 -16.10507 -15.71735 -15.27944 -15.17698 -14.75080 -14.24824 -14.05308 -13.79374 -13.54563 -13.18763 -12.88156 -12.58430 -12.55496 -12.50610 -12.36552 -12.15742 -11.75971 -11.65368 -11.19275 -11.11364 -11.04391 -10.90747 -10.70203 -10.48652 -10.17064 -10.00188 -9.85245 -9.67862 -9.21897 -8.96131 -8.55488 -7.62338 -7.51485 -6.79284 -4.41151 2.21858 2.81159 3.08635 3.13441 3.15278 3.71207 3.81894 3.87284 3.92977 4.35418 4.50689 4.63184 4.83542 4.91521 5.10326 5.25447 5.50723 5.53240 5.54439 5.61506 5.69366 5.80509 5.83251 5.93764 5.95779 6.06277 6.19461 6.23706 6.27738 6.43549 6.72683 6.93185 7.00085 7.03697 7.21788 7.38685 7.48101 7.70529 7.77207 7.93288 8.12413 8.20832 8.51389 8.80999 8.83982 8.99272 10.15613 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.023683 B = 0.003884 C = 0.003524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1181.979596 B = 7208.256656 C = 7944.351447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.086 4.086 3 C -0.135 4.135 4 C 0.089 3.911 5 H 0.070 0.930 6 O -0.546 6.546 7 C -0.185 4.185 8 C 0.142 3.858 9 H 0.116 0.884 10 N -0.727 5.727 11 C 0.563 3.437 12 O -0.546 6.546 13 C -0.128 4.128 14 C -0.218 4.218 15 C -0.098 4.098 16 C -0.212 4.212 17 C 0.099 3.901 18 C -0.460 4.460 19 H 0.082 0.918 20 C 0.073 3.927 21 N -0.784 5.784 22 Si 0.909 3.091 23 H -0.260 1.260 24 H -0.274 1.274 25 H -0.271 1.271 26 C -0.092 4.092 27 H 0.056 0.944 28 H 0.053 0.947 29 H 0.069 0.931 30 H 0.061 0.939 31 H 0.064 0.936 32 H 0.069 0.931 33 H 0.379 0.621 34 H 0.090 0.910 35 H 0.076 0.924 36 H 0.398 0.602 37 H 0.088 0.912 38 H 0.093 0.907 39 H 0.096 0.904 40 H 0.284 0.716 41 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.060 3.537 -15.363 15.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.087 4.087 3 C -0.192 4.192 4 C 0.029 3.971 5 H 0.088 0.912 6 O -0.351 6.351 7 C -0.224 4.224 8 C 0.037 3.963 9 H 0.134 0.866 10 N -0.380 5.380 11 C 0.354 3.646 12 O -0.423 6.423 13 C -0.132 4.132 14 C -0.238 4.238 15 C -0.116 4.116 16 C -0.232 4.232 17 C 0.097 3.903 18 C -0.489 4.489 19 H 0.100 0.900 20 C -0.146 4.146 21 N -0.408 5.408 22 Si 0.734 3.266 23 H -0.183 1.183 24 H -0.199 1.199 25 H -0.196 1.196 26 C -0.112 4.112 27 H 0.075 0.925 28 H 0.072 0.928 29 H 0.088 0.912 30 H 0.080 0.920 31 H 0.083 0.917 32 H 0.088 0.912 33 H 0.226 0.774 34 H 0.109 0.891 35 H 0.094 0.906 36 H 0.235 0.765 37 H 0.106 0.894 38 H 0.111 0.889 39 H 0.114 0.886 40 H 0.095 0.905 41 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -0.951 2.835 -14.823 15.121 hybrid contribution 0.641 -0.272 0.141 0.710 sum -0.310 2.563 -14.682 14.907 Atomic orbital electron populations 1.21594 0.93159 1.02753 1.01455 1.22364 0.96887 0.94683 0.94766 1.21607 1.00722 0.94059 1.02813 1.22639 0.90907 0.88603 0.94953 0.91231 1.86459 1.44261 1.41249 1.63160 1.24131 0.98283 1.02746 0.97282 1.22394 0.94869 0.95360 0.83718 0.86621 1.45989 1.65378 1.16955 1.09640 1.18893 0.76974 0.86051 0.82656 1.90690 1.49364 1.17814 1.84481 1.19498 1.05182 0.94942 0.93531 1.20320 1.10972 0.94867 0.97688 1.20429 0.99962 0.97664 0.93532 1.21101 1.10470 0.95258 0.96369 1.17609 0.89482 0.90386 0.92866 1.19619 1.15966 1.12917 1.00430 0.90039 1.25964 0.93583 0.97292 0.97743 1.69799 1.07811 1.26646 1.36529 0.86240 0.79758 0.80120 0.80529 1.18336 1.19903 1.19558 1.21640 0.99610 1.00452 0.89484 0.92479 0.92842 0.91169 0.91980 0.91742 0.91233 0.77384 0.89149 0.90557 0.76456 0.89386 0.88922 0.88620 0.90479 0.84896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.57 9.04 37.16 0.34 -1.23 16 2 C -0.09 -0.99 1.35 -153.69 -0.21 -1.20 16 3 C -0.13 -1.29 8.05 37.16 0.30 -0.99 16 4 C 0.09 0.90 4.69 -25.92 -0.12 0.78 16 5 H 0.07 0.57 8.10 -51.93 -0.42 0.15 16 6 O -0.55 -5.63 12.12 -35.23 -0.43 -6.06 16 7 C -0.19 -2.24 7.36 -25.92 -0.19 -2.43 16 8 C 0.14 2.12 3.63 -67.11 -0.24 1.88 16 9 H 0.12 2.07 7.42 -51.93 -0.39 1.68 16 10 N -0.73 -12.33 5.18 -53.94 -0.28 -12.61 16 11 C 0.56 12.60 7.77 -12.31 -0.10 12.51 16 12 O -0.55 -14.05 15.93 5.32 0.08 -13.96 16 13 C -0.13 -3.07 5.87 -105.04 -0.62 -3.68 16 14 C -0.22 -4.60 9.55 -38.92 -0.37 -4.98 16 15 C -0.10 -2.08 10.01 -39.73 -0.40 -2.48 16 16 C -0.21 -5.05 9.78 -38.81 -0.38 -5.43 16 17 C 0.10 2.64 5.57 -106.87 -0.59 2.04 16 18 C -0.46 -12.18 9.05 -37.73 -0.34 -12.52 16 19 H 0.08 2.05 7.90 -52.49 -0.41 1.63 16 20 C 0.07 1.87 5.14 -17.35 -0.09 1.78 16 21 N -0.78 -21.00 10.97 55.55 0.61 -20.39 16 22 Si 0.91 18.91 29.59 -169.99 -5.03 13.88 16 23 H -0.26 -5.28 7.11 56.52 0.40 -4.88 16 24 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 25 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 26 C -0.09 -2.48 8.23 -38.44 -0.32 -2.79 16 27 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.07 0.90 6.96 -51.93 -0.36 0.54 16 30 H 0.06 0.53 7.34 -51.93 -0.38 0.15 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.07 0.71 7.10 -51.93 -0.37 0.34 16 33 H 0.38 2.21 9.12 45.56 0.42 2.62 16 34 H 0.09 1.01 7.65 -51.93 -0.40 0.61 16 35 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.40 5.86 4.68 -40.82 -0.19 5.67 16 37 H 0.09 1.53 6.38 -52.49 -0.33 1.19 16 38 H 0.09 1.67 8.06 -52.48 -0.42 1.24 16 39 H 0.10 2.12 8.06 -52.49 -0.42 1.69 16 40 H 0.28 6.98 8.30 -40.82 -0.34 6.65 16 41 H 0.13 3.89 5.77 -52.49 -0.30 3.59 16 LS Contribution 335.62 15.07 5.06 5.06 Total: -1.00 -31.13 335.62 -8.13 -39.25 By element: Atomic # 1 Polarization: 18.38 SS G_CDS: -4.81 Total: 13.57 kcal Atomic # 6 Polarization: -15.41 SS G_CDS: -3.33 Total: -18.74 kcal Atomic # 7 Polarization: -33.33 SS G_CDS: 0.33 Total: -33.00 kcal Atomic # 8 Polarization: -19.68 SS G_CDS: -0.34 Total: -20.02 kcal Atomic # 14 Polarization: 18.91 SS G_CDS: -5.03 Total: 13.88 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -31.13 -8.13 -39.25 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190659367.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.712 kcal (2) G-P(sol) polarization free energy of solvation -31.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds