Wall clock time and date at job start Tue Mar 31 2020 07:09:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52997 * 112.90654 * 2 1 4 4 C 1.53779 * 113.61627 * 228.74482 * 2 1 3 5 5 H 1.08992 * 113.61553 * 105.38452 * 4 2 1 6 6 O 1.42896 * 113.61449 * 334.56550 * 4 2 1 7 7 C 1.53780 * 87.08146 * 220.01766 * 4 2 1 8 8 C 1.53781 * 87.08267 * 25.43536 * 7 4 2 9 9 H 1.08997 * 113.69508 * 89.12709 * 8 7 4 10 10 N 1.46504 * 113.61668 * 220.02112 * 8 7 4 11 11 C 1.34769 * 119.99848 * 252.49578 * 10 8 7 12 12 O 1.21547 * 120.00467 * 359.97438 * 11 10 8 13 13 C 1.47888 * 119.99912 * 179.97438 * 11 10 8 14 14 C 1.39919 * 120.02508 * 359.97438 * 13 11 10 15 15 C 1.38326 * 120.35857 * 179.97438 * 14 13 11 16 16 C 1.37756 * 120.41373 * 359.97438 * 15 14 13 17 17 C 1.40750 * 120.03920 * 359.97438 * 16 15 14 18 18 C 1.41439 * 120.17853 * 180.02562 * 17 16 15 19 19 H 1.07992 * 119.99795 * 334.94761 * 18 17 16 20 20 C 1.39930 * 119.99694 * 154.94612 * 18 17 16 21 21 N 1.30829 * 120.00422 * 342.58707 * 20 18 17 22 22 Si 1.86803 * 119.99910 * 162.58811 * 20 18 17 23 23 H 1.48498 * 109.46928 * 359.97438 * 22 20 18 24 24 H 1.48501 * 109.47205 * 119.99790 * 22 20 18 25 25 H 1.48498 * 109.47269 * 240.00052 * 22 20 18 26 26 C 1.38996 * 120.02390 * 179.97438 * 13 11 10 27 27 H 1.09000 * 109.46919 * 288.74816 * 1 2 3 28 28 H 1.08997 * 109.46832 * 48.75223 * 1 2 3 29 29 H 1.09000 * 109.46627 * 168.74991 * 1 2 3 30 30 H 1.09005 * 109.47409 * 191.25191 * 3 2 1 31 31 H 1.09003 * 109.47025 * 311.24599 * 3 2 1 32 32 H 1.08995 * 109.47485 * 71.24597 * 3 2 1 33 33 H 0.96701 * 114.00461 * 179.97438 * 6 4 2 34 34 H 1.08991 * 113.61870 * 270.88535 * 7 4 2 35 35 H 1.09000 * 113.61238 * 139.98010 * 7 4 2 36 36 H 0.96996 * 119.99747 * 72.48949 * 10 8 7 37 37 H 1.07995 * 119.82220 * 0.25715 * 14 13 11 38 38 H 1.08007 * 119.79734 * 180.02562 * 15 14 13 39 39 H 1.07998 * 119.98332 * 180.02562 * 16 15 14 40 40 H 0.97007 * 120.00278 * 180.02562 * 21 20 18 41 41 H 1.07995 * 120.20621 * 0.04018 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.1256 1.4093 0.0000 4 6 2.1461 -0.9291 -1.0593 5 1 2.5638 -0.3991 -1.9151 6 8 1.2921 -2.0100 -1.4388 7 6 3.1924 -1.3135 0.0001 8 6 2.1461 -0.9290 1.0595 9 1 1.4940 -1.7527 1.3502 10 7 2.7092 -0.2162 2.2089 11 6 2.8173 -0.8375 3.4000 12 8 2.4473 -1.9889 3.5208 13 6 3.3862 -0.1181 4.5602 14 6 3.8128 1.2072 4.4217 15 6 4.3455 1.8867 5.5024 16 6 4.4617 1.2672 6.7273 17 6 4.0369 -0.0652 6.8860 18 6 4.1544 -0.7040 8.1425 19 1 4.8979 -0.3697 8.8508 20 6 3.3072 -1.7692 8.4677 21 7 2.2060 -1.9604 7.7877 22 14 3.7486 -2.9182 9.8728 23 1 5.0356 -2.4896 10.4770 24 1 2.6792 -2.8749 10.9022 25 1 3.8822 -4.3039 9.3558 26 6 3.4975 -0.7582 5.7890 27 1 -0.3633 0.3303 0.9731 28 1 -0.3633 0.6775 -0.7727 29 1 -0.3632 -1.0079 -0.2005 30 1 3.1955 1.3517 -0.2005 31 1 1.6429 2.0077 -0.7727 32 1 1.9627 1.8726 0.9730 33 1 1.6738 -2.5978 -2.1051 34 1 4.0711 -0.6687 0.0002 35 1 3.4444 -2.3740 0.0002 36 1 3.0042 0.7027 2.1126 37 1 3.7215 1.7038 3.4670 38 1 4.6716 2.9097 5.3854 39 1 4.8782 1.8044 7.5665 40 1 1.6185 -2.6986 8.0134 41 1 3.1701 -1.7813 5.9003 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000190659367.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:09:21 Heat of formation + Delta-G solvation = -75.722379 kcal Electronic energy + Delta-G solvation = -22855.496116 eV Core-core repulsion = 19506.368066 eV Total energy + Delta-G solvation = -3349.128051 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.74166 -40.24836 -38.70369 -36.44751 -35.63158 -34.26803 -32.01559 -31.34014 -31.17066 -28.38189 -27.29455 -25.95203 -23.76809 -23.43432 -22.78032 -21.23399 -19.93880 -19.25738 -18.44547 -17.68156 -17.18173 -16.78291 -16.45288 -16.25750 -15.79680 -15.57888 -15.16698 -14.92647 -14.59142 -14.42938 -14.28137 -13.78165 -13.47703 -13.40393 -13.25962 -13.02456 -12.98619 -12.81552 -12.72595 -12.56095 -12.18934 -12.01916 -11.94868 -11.86310 -11.51313 -11.10180 -11.09429 -10.87144 -10.59062 -10.01357 -9.47237 -9.39343 -8.67782 -6.39917 0.36486 0.99254 1.35191 1.45471 1.51821 2.07777 2.18162 2.27947 2.77295 3.02849 3.38865 3.63334 3.68083 3.81411 3.99569 4.05702 4.22496 4.41029 4.49373 4.53503 4.57897 4.71239 4.76232 4.85964 4.91790 4.97146 4.99209 5.07709 5.10801 5.12209 5.18412 5.30065 5.36496 5.44566 5.50239 5.60580 5.85702 5.91508 6.04203 6.27673 6.51225 6.69189 6.86727 6.93008 6.93706 7.31871 8.29366 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.023683 B = 0.003884 C = 0.003524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1181.979596 B = 7208.256656 C = 7944.351447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.079 4.079 3 C -0.135 4.135 4 C 0.104 3.896 5 H 0.108 0.892 6 O -0.566 6.566 7 C -0.180 4.180 8 C 0.117 3.883 9 H 0.074 0.926 10 N -0.700 5.700 11 C 0.558 3.442 12 O -0.594 6.594 13 C -0.140 4.140 14 C -0.196 4.196 15 C -0.094 4.094 16 C -0.216 4.216 17 C 0.068 3.932 18 C -0.498 4.498 19 H 0.085 0.915 20 C 0.029 3.971 21 N -0.828 5.828 22 Si 0.983 3.017 23 H -0.249 1.249 24 H -0.263 1.263 25 H -0.272 1.272 26 C -0.132 4.132 27 H 0.040 0.960 28 H 0.076 0.924 29 H 0.053 0.947 30 H 0.078 0.922 31 H 0.087 0.913 32 H 0.062 0.938 33 H 0.398 0.602 34 H 0.109 0.891 35 H 0.064 0.936 36 H 0.413 0.587 37 H 0.137 0.863 38 H 0.142 0.858 39 H 0.110 0.890 40 H 0.286 0.714 41 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.134 6.212 -17.721 18.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.080 4.080 3 C -0.192 4.192 4 C 0.045 3.955 5 H 0.126 0.874 6 O -0.374 6.374 7 C -0.219 4.219 8 C 0.012 3.988 9 H 0.093 0.907 10 N -0.352 5.352 11 C 0.348 3.652 12 O -0.476 6.476 13 C -0.143 4.143 14 C -0.216 4.216 15 C -0.112 4.112 16 C -0.236 4.236 17 C 0.066 3.934 18 C -0.527 4.527 19 H 0.103 0.897 20 C -0.186 4.186 21 N -0.454 5.454 22 Si 0.803 3.197 23 H -0.172 1.172 24 H -0.188 1.188 25 H -0.197 1.197 26 C -0.153 4.153 27 H 0.059 0.941 28 H 0.095 0.905 29 H 0.072 0.928 30 H 0.097 0.903 31 H 0.105 0.895 32 H 0.081 0.919 33 H 0.249 0.751 34 H 0.127 0.873 35 H 0.082 0.918 36 H 0.253 0.747 37 H 0.154 0.846 38 H 0.159 0.841 39 H 0.128 0.872 40 H 0.096 0.904 41 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 0.258 5.558 -17.239 18.114 hybrid contribution 0.253 -0.981 0.686 1.224 sum 0.511 4.576 -16.553 17.181 Atomic orbital electron populations 1.21583 0.93760 1.02286 1.01331 1.22427 0.96475 0.95831 0.93250 1.21666 1.01890 0.92309 1.03348 1.22592 0.89424 0.88194 0.95329 0.87446 1.86430 1.44945 1.41948 1.64126 1.24149 0.98670 1.02490 0.96548 1.22669 0.96468 0.95820 0.83804 0.90734 1.45781 1.63694 1.17285 1.08470 1.18860 0.76889 0.85547 0.83934 1.90663 1.51618 1.19916 1.85367 1.19807 1.04979 0.96413 0.93115 1.20840 1.07760 0.93217 0.99788 1.20938 0.98444 0.99641 0.92161 1.21430 1.09588 0.94295 0.98260 1.17950 0.90547 0.91954 0.92997 1.19902 1.17029 1.14771 1.01027 0.89677 1.26873 0.92941 0.98452 1.00320 1.69906 1.09157 1.27581 1.38757 0.85147 0.79945 0.77378 0.77196 1.17238 1.18809 1.19673 1.21437 1.02773 0.99555 0.91524 0.94052 0.90493 0.92833 0.90288 0.89461 0.91891 0.75103 0.87309 0.91763 0.74748 0.84576 0.84071 0.87207 0.90387 0.88661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.96 9.04 71.98 0.65 -2.31 16 2 C -0.08 -1.62 1.35 -51.65 -0.07 -1.69 16 3 C -0.14 -1.97 8.05 71.98 0.58 -1.39 16 4 C 0.10 1.79 4.69 31.12 0.15 1.94 16 5 H 0.11 1.16 8.10 -2.39 -0.02 1.14 16 6 O -0.57 -10.63 12.12 -148.98 -1.81 -12.43 16 7 C -0.18 -3.98 7.36 31.12 0.23 -3.75 16 8 C 0.12 3.45 3.63 45.52 0.17 3.62 16 9 H 0.07 2.84 7.42 -2.39 -0.02 2.82 16 10 N -0.70 -23.12 5.18 -442.86 -2.29 -25.41 16 11 C 0.56 25.65 7.77 86.80 0.67 26.33 16 12 O -0.59 -32.71 15.93 -3.86 -0.06 -32.77 16 13 C -0.14 -6.78 5.87 -20.13 -0.12 -6.90 16 14 C -0.20 -7.73 9.55 22.70 0.22 -7.51 16 15 C -0.09 -3.70 10.01 22.18 0.22 -3.47 16 16 C -0.22 -10.12 9.78 22.77 0.22 -9.90 16 17 C 0.07 3.74 5.57 -21.32 -0.12 3.62 16 18 C -0.50 -27.55 9.05 23.47 0.21 -27.34 16 19 H 0.09 4.43 7.90 -2.91 -0.02 4.41 16 20 C 0.03 1.53 5.14 85.25 0.44 1.97 16 21 N -0.83 -47.49 10.97 21.82 0.24 -47.26 16 22 Si 0.98 40.43 29.59 68.60 2.03 42.46 16 23 H -0.25 -9.69 7.11 99.48 0.71 -8.98 16 24 H -0.26 -10.28 7.11 99.48 0.71 -9.57 16 25 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 26 C -0.13 -7.54 8.23 23.01 0.19 -7.35 16 27 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 28 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 29 H 0.05 1.37 6.96 -2.39 -0.02 1.35 16 30 H 0.08 0.92 7.34 -2.38 -0.02 0.90 16 31 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.06 1.02 7.10 -2.39 -0.02 1.00 16 33 H 0.40 3.75 9.12 -74.06 -0.68 3.08 16 34 H 0.11 2.03 7.65 -2.39 -0.02 2.01 16 35 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 36 H 0.41 10.88 4.68 -92.71 -0.43 10.45 16 37 H 0.14 3.99 6.38 -2.91 -0.02 3.97 16 38 H 0.14 4.24 8.06 -2.91 -0.02 4.22 16 39 H 0.11 4.73 8.06 -2.91 -0.02 4.70 16 40 H 0.29 15.10 8.30 -92.70 -0.77 14.33 16 41 H 0.10 6.09 5.77 -2.91 -0.02 6.07 16 Total: -1.00 -74.93 335.62 1.70 -73.23 By element: Atomic # 1 Polarization: 36.38 SS G_CDS: -0.05 Total: 36.34 kcal Atomic # 6 Polarization: -37.80 SS G_CDS: 3.64 Total: -34.15 kcal Atomic # 7 Polarization: -70.61 SS G_CDS: -2.05 Total: -72.66 kcal Atomic # 8 Polarization: -43.33 SS G_CDS: -1.87 Total: -45.20 kcal Atomic # 14 Polarization: 40.43 SS G_CDS: 2.03 Total: 42.46 kcal Total: -74.93 1.70 -73.23 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190659367.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.497 kcal (2) G-P(sol) polarization free energy of solvation -74.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds