Wall clock time and date at job start Tue Mar 31 2020 05:55:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38230 * 120.00147 * 2 1 4 4 C 1.38231 * 120.00164 * 179.97438 * 3 2 1 5 5 C 1.38242 * 120.00067 * 359.95515 * 4 3 2 6 6 C 1.50698 * 119.99956 * 180.02562 * 5 4 3 7 7 C 1.53002 * 109.47347 * 90.00088 * 6 5 4 8 8 C 1.50691 * 109.47382 * 179.97438 * 7 6 5 9 9 O 1.21278 * 120.00028 * 0.02562 * 8 7 6 10 10 N 1.34781 * 120.00407 * 179.97438 * 8 7 6 11 11 C 1.47575 * 134.49576 * 180.02562 * 10 8 7 12 12 C 1.53952 * 86.11883 * 155.35932 * 11 10 8 13 13 O 1.42896 * 113.73968 * 269.15538 * 12 11 10 14 14 C 1.50696 * 113.74096 * 137.94737 * 12 11 10 15 15 H 1.07999 * 120.00319 * 0.02562 * 14 12 11 16 16 C 1.37885 * 119.99717 * 179.97438 * 14 12 11 17 17 N 1.31516 * 119.99913 * 180.02562 * 16 14 12 18 18 Si 1.86798 * 119.99766 * 0.02562 * 16 14 12 19 19 H 1.48500 * 109.47353 * 269.99586 * 18 16 14 20 20 H 1.48501 * 109.47293 * 30.00037 * 18 16 14 21 21 H 1.48504 * 109.46680 * 149.99835 * 18 16 14 22 22 C 1.47581 * 134.48697 * 359.97438 * 10 8 7 23 23 C 1.38234 * 119.99594 * 0.27501 * 5 4 3 24 24 C 1.38234 * 120.00034 * 359.51172 * 23 5 4 25 25 H 1.08999 * 109.47271 * 90.00287 * 1 2 3 26 26 H 1.08999 * 109.47332 * 210.00390 * 1 2 3 27 27 H 1.09004 * 109.47245 * 330.00195 * 1 2 3 28 28 H 1.08005 * 120.00104 * 359.97438 * 3 2 1 29 29 H 1.08004 * 120.00516 * 179.97438 * 4 3 2 30 30 H 1.08998 * 109.47344 * 329.99887 * 6 5 4 31 31 H 1.09001 * 109.47100 * 210.00075 * 6 5 4 32 32 H 1.09006 * 109.46821 * 59.99486 * 7 6 5 33 33 H 1.09001 * 109.47010 * 300.00042 * 7 6 5 34 34 H 1.08992 * 113.77450 * 41.05752 * 11 10 8 35 35 H 1.09008 * 113.87093 * 269.66964 * 11 10 8 36 36 H 0.96697 * 113.99744 * 178.07719 * 13 12 11 37 37 H 0.97001 * 119.99646 * 179.97438 * 17 16 14 38 38 H 1.09002 * 113.76822 * 90.34347 * 22 10 8 39 39 H 1.08998 * 113.77440 * 318.94601 * 22 10 8 40 40 H 1.08003 * 119.99893 * 179.72809 * 23 5 4 41 41 H 1.07998 * 119.99545 * 180.24907 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5805 1.1971 0.0005 5 6 4.2717 -0.0001 0.0020 6 6 5.7787 -0.0001 0.0032 7 6 6.2876 0.0010 1.4461 8 6 7.7945 0.0004 1.4472 9 8 8.4018 -0.0003 0.3974 10 7 8.4676 0.0018 2.6150 11 6 9.8961 0.0022 2.9854 12 6 9.4449 0.6441 4.3099 13 8 9.4314 2.0727 4.2816 14 6 10.1437 0.0869 5.5232 15 1 10.8847 -0.6906 5.4101 16 6 9.8378 0.5705 6.7777 17 7 10.4480 0.0846 7.8366 18 14 8.5566 1.9158 6.9732 19 1 9.2170 3.2436 6.8945 20 1 7.5477 1.7997 5.8898 21 1 7.8867 1.7735 8.2908 22 6 8.0719 0.0043 4.0367 23 6 3.5805 -1.1972 -0.0028 24 6 2.1982 -1.1972 0.0011 25 1 -0.3634 -0.0001 -1.0276 26 1 -0.3634 -0.8899 0.5139 27 1 -0.3634 0.8900 0.5138 28 1 1.6582 2.1325 -0.0004 29 1 4.1206 2.1324 0.0001 30 1 6.1424 0.8895 -0.5111 31 1 6.1424 -0.8904 -0.5097 32 1 5.9238 -0.8886 1.9603 33 1 5.9239 0.8914 1.9589 34 1 10.5102 0.6566 2.3669 35 1 10.3217 -0.9945 3.1028 36 1 9.1205 2.4794 5.1020 37 1 10.2331 0.4252 8.7190 38 1 7.9591 -0.9924 4.4631 39 1 7.2299 0.6605 4.2573 40 1 4.1205 -2.1325 -0.0061 41 1 1.6582 -2.1325 0.0014 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000193138533.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:25 Heat of formation + Delta-G solvation = -26.328376 kcal Electronic energy + Delta-G solvation = -22230.902862 eV Core-core repulsion = 18883.916696 eV Total energy + Delta-G solvation = -3346.986166 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.93377 -39.47390 -37.75637 -34.65448 -34.43924 -32.57076 -31.38516 -31.05244 -29.09268 -27.14944 -25.63215 -25.26577 -23.22847 -22.84795 -20.74305 -20.10774 -18.54188 -17.48199 -16.78957 -16.38408 -15.91477 -15.87944 -15.30574 -15.08596 -15.02141 -14.01079 -13.91875 -13.71756 -13.55141 -13.42260 -12.90254 -12.87654 -12.80023 -12.48231 -12.39929 -12.16424 -12.05547 -11.62016 -11.28618 -11.25061 -11.10131 -10.95809 -10.83919 -10.62223 -10.15934 -9.74607 -9.33052 -9.05267 -9.03502 -8.73078 -8.57099 -8.03832 -6.44698 -4.50718 1.18538 1.27579 2.96930 2.98246 3.07877 3.12290 3.36631 3.64249 4.00270 4.54990 4.64691 4.65050 4.75636 4.88623 5.00101 5.02653 5.12285 5.22355 5.25246 5.32372 5.38329 5.53491 5.55455 5.58851 5.65624 5.80973 5.94203 6.00165 6.01688 6.06898 6.18718 6.24561 6.29435 6.33827 6.44016 6.45535 6.56722 6.59000 6.89081 7.17920 7.99871 8.29161 8.47926 8.59174 8.61891 9.12873 10.67577 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.020707 B = 0.003456 C = 0.003168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1351.883982 B = 8098.794295 C = 8836.104318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.096 4.096 3 C -0.120 4.120 4 C -0.112 4.112 5 C -0.082 4.082 6 C -0.064 4.064 7 C -0.128 4.128 8 C 0.529 3.471 9 O -0.561 6.561 10 N -0.635 5.635 11 C 0.126 3.874 12 C 0.195 3.805 13 O -0.553 6.553 14 C -0.536 4.536 15 H 0.092 0.908 16 C 0.080 3.920 17 N -0.876 5.876 18 Si 0.859 3.141 19 H -0.266 1.266 20 H -0.257 1.257 21 H -0.283 1.283 22 C 0.063 3.937 23 C -0.112 4.112 24 C -0.120 4.120 25 H 0.068 0.932 26 H 0.065 0.935 27 H 0.064 0.936 28 H 0.120 0.880 29 H 0.122 0.878 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.090 0.910 33 H 0.089 0.911 34 H 0.075 0.925 35 H 0.094 0.906 36 H 0.351 0.649 37 H 0.271 0.729 38 H 0.095 0.905 39 H 0.068 0.932 40 H 0.122 0.878 41 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.550 -0.299 -11.321 20.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.096 4.096 3 C -0.138 4.138 4 C -0.130 4.130 5 C -0.083 4.083 6 C -0.101 4.101 7 C -0.168 4.168 8 C 0.319 3.681 9 O -0.441 6.441 10 N -0.369 5.369 11 C 0.004 3.996 12 C 0.154 3.846 13 O -0.364 6.364 14 C -0.574 4.574 15 H 0.110 0.890 16 C -0.126 4.126 17 N -0.512 5.512 18 Si 0.688 3.312 19 H -0.193 1.193 20 H -0.183 1.183 21 H -0.210 1.210 22 C -0.060 4.060 23 C -0.130 4.130 24 C -0.138 4.138 25 H 0.086 0.914 26 H 0.084 0.916 27 H 0.083 0.917 28 H 0.138 0.862 29 H 0.140 0.860 30 H 0.098 0.902 31 H 0.098 0.902 32 H 0.108 0.892 33 H 0.108 0.892 34 H 0.093 0.907 35 H 0.112 0.888 36 H 0.203 0.797 37 H 0.081 0.919 38 H 0.113 0.887 39 H 0.086 0.914 40 H 0.140 0.860 41 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -17.094 -0.401 -12.427 21.137 hybrid contribution -0.933 0.753 1.000 1.561 sum -18.026 0.352 -11.426 21.346 Atomic orbital electron populations 1.20776 0.91392 1.02677 1.02137 1.19906 0.95966 0.93305 1.00424 1.21014 0.94166 0.97462 1.01109 1.21097 0.94106 0.97802 1.00030 1.19963 0.95733 0.93198 0.99358 1.20334 0.89672 1.04415 0.95729 1.21552 0.92398 1.04399 0.98410 1.20215 0.89489 0.76120 0.82295 1.90644 1.70572 1.52219 1.30715 1.50133 1.09907 1.71265 1.05548 1.23281 0.82400 1.00368 0.93538 1.20556 0.90792 0.78763 0.94518 1.86479 1.89213 1.20564 1.40137 1.21238 1.24524 1.22995 0.88645 0.89050 1.25015 0.95530 0.96107 0.95921 1.69857 1.40854 1.41638 0.98817 0.87327 0.82527 0.82959 0.78388 1.19275 1.18261 1.20983 1.24607 1.01639 1.01923 0.77848 1.21083 0.94091 0.97745 1.00123 1.21012 0.94167 0.97444 1.01146 0.91358 0.91645 0.91654 0.86223 0.85969 0.90222 0.90237 0.89180 0.89219 0.90663 0.88814 0.79682 0.91871 0.88704 0.91369 0.85973 0.86217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.79 10.01 36.01 0.36 -0.43 16 2 C -0.10 -0.93 5.88 -104.63 -0.62 -1.55 16 3 C -0.12 -1.20 9.70 -39.59 -0.38 -1.59 16 4 C -0.11 -1.25 9.70 -39.58 -0.38 -1.63 16 5 C -0.08 -0.97 5.13 -104.62 -0.54 -1.51 16 6 C -0.06 -0.83 4.63 -27.88 -0.13 -0.96 16 7 C -0.13 -1.83 5.43 -27.89 -0.15 -1.98 16 8 C 0.53 9.95 8.06 -10.99 -0.09 9.86 16 9 O -0.56 -12.10 16.71 5.56 0.09 -12.01 16 10 N -0.63 -12.55 3.61 -178.33 -0.64 -13.19 16 11 C 0.13 2.62 8.23 -2.97 -0.02 2.59 16 12 C 0.19 4.38 1.06 -90.86 -0.10 4.29 16 13 O -0.55 -12.91 13.32 -35.23 -0.47 -13.38 16 14 C -0.54 -13.69 9.20 -34.44 -0.32 -14.01 16 15 H 0.09 2.50 8.06 -52.49 -0.42 2.07 16 16 C 0.08 2.07 5.47 -17.82 -0.10 1.97 16 17 N -0.88 -24.31 13.96 55.43 0.77 -23.54 16 18 Si 0.86 18.65 24.34 -169.99 -4.14 14.51 16 19 H -0.27 -5.67 7.06 56.52 0.40 -5.27 16 20 H -0.26 -5.18 5.28 56.52 0.30 -4.88 16 21 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 22 C 0.06 1.23 7.20 -2.99 -0.02 1.21 16 23 C -0.11 -1.22 9.70 -39.58 -0.38 -1.61 16 24 C -0.12 -1.19 9.70 -39.58 -0.38 -1.57 16 25 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.06 0.41 8.09 -51.93 -0.42 -0.01 16 27 H 0.06 0.41 8.09 -51.93 -0.42 -0.01 16 28 H 0.12 0.97 8.06 -52.48 -0.42 0.55 16 29 H 0.12 1.23 8.06 -52.48 -0.42 0.81 16 30 H 0.08 1.08 8.04 -51.93 -0.42 0.67 16 31 H 0.08 1.05 8.04 -51.93 -0.42 0.64 16 32 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 33 H 0.09 1.24 8.14 -51.93 -0.42 0.81 16 34 H 0.07 1.58 8.14 -51.93 -0.42 1.16 16 35 H 0.09 1.82 8.09 -51.92 -0.42 1.40 16 36 H 0.35 7.79 3.31 45.56 0.15 7.94 16 37 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 38 H 0.09 1.76 8.09 -51.93 -0.42 1.34 16 39 H 0.07 1.27 6.98 -51.93 -0.36 0.90 16 40 H 0.12 1.17 8.06 -52.48 -0.42 0.75 16 41 H 0.12 0.95 8.06 -52.49 -0.42 0.52 16 LS Contribution 340.39 15.07 5.13 5.13 Total: -1.00 -30.06 340.39 -8.28 -38.34 By element: Atomic # 1 Polarization: 16.82 SS G_CDS: -5.77 Total: 11.05 kcal Atomic # 6 Polarization: -3.66 SS G_CDS: -3.25 Total: -6.91 kcal Atomic # 7 Polarization: -36.86 SS G_CDS: 0.13 Total: -36.73 kcal Atomic # 8 Polarization: -25.01 SS G_CDS: -0.38 Total: -25.39 kcal Atomic # 14 Polarization: 18.65 SS G_CDS: -4.14 Total: 14.51 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -30.06 -8.28 -38.34 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193138533.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.016 kcal (2) G-P(sol) polarization free energy of solvation -30.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds