Wall clock time and date at job start Tue Mar 31 2020 05:55:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38230 * 120.00147 * 2 1 4 4 C 1.38231 * 120.00164 * 179.97438 * 3 2 1 5 5 C 1.38242 * 120.00067 * 359.95515 * 4 3 2 6 6 C 1.50698 * 119.99956 * 180.02562 * 5 4 3 7 7 C 1.53002 * 109.47347 * 90.00088 * 6 5 4 8 8 C 1.50691 * 109.47382 * 179.97438 * 7 6 5 9 9 O 1.21278 * 120.00028 * 0.02562 * 8 7 6 10 10 N 1.34781 * 120.00407 * 179.97438 * 8 7 6 11 11 C 1.47575 * 134.49576 * 180.02562 * 10 8 7 12 12 C 1.53952 * 86.11883 * 155.35932 * 11 10 8 13 13 O 1.42896 * 113.73968 * 269.15538 * 12 11 10 14 14 C 1.50696 * 113.74096 * 137.94737 * 12 11 10 15 15 H 1.07999 * 120.00319 * 0.02562 * 14 12 11 16 16 C 1.37885 * 119.99717 * 179.97438 * 14 12 11 17 17 N 1.31516 * 119.99913 * 180.02562 * 16 14 12 18 18 Si 1.86798 * 119.99766 * 0.02562 * 16 14 12 19 19 H 1.48500 * 109.47353 * 269.99586 * 18 16 14 20 20 H 1.48501 * 109.47293 * 30.00037 * 18 16 14 21 21 H 1.48504 * 109.46680 * 149.99835 * 18 16 14 22 22 C 1.47581 * 134.48697 * 359.97438 * 10 8 7 23 23 C 1.38234 * 119.99594 * 0.27501 * 5 4 3 24 24 C 1.38234 * 120.00034 * 359.51172 * 23 5 4 25 25 H 1.08999 * 109.47271 * 90.00287 * 1 2 3 26 26 H 1.08999 * 109.47332 * 210.00390 * 1 2 3 27 27 H 1.09004 * 109.47245 * 330.00195 * 1 2 3 28 28 H 1.08005 * 120.00104 * 359.97438 * 3 2 1 29 29 H 1.08004 * 120.00516 * 179.97438 * 4 3 2 30 30 H 1.08998 * 109.47344 * 329.99887 * 6 5 4 31 31 H 1.09001 * 109.47100 * 210.00075 * 6 5 4 32 32 H 1.09006 * 109.46821 * 59.99486 * 7 6 5 33 33 H 1.09001 * 109.47010 * 300.00042 * 7 6 5 34 34 H 1.08992 * 113.77450 * 41.05752 * 11 10 8 35 35 H 1.09008 * 113.87093 * 269.66964 * 11 10 8 36 36 H 0.96697 * 113.99744 * 178.07719 * 13 12 11 37 37 H 0.97001 * 119.99646 * 179.97438 * 17 16 14 38 38 H 1.09002 * 113.76822 * 90.34347 * 22 10 8 39 39 H 1.08998 * 113.77440 * 318.94601 * 22 10 8 40 40 H 1.08003 * 119.99893 * 179.72809 * 23 5 4 41 41 H 1.07998 * 119.99545 * 180.24907 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5805 1.1971 0.0005 5 6 4.2717 -0.0001 0.0020 6 6 5.7787 -0.0001 0.0032 7 6 6.2876 0.0010 1.4461 8 6 7.7945 0.0004 1.4472 9 8 8.4018 -0.0003 0.3974 10 7 8.4676 0.0018 2.6150 11 6 9.8961 0.0022 2.9854 12 6 9.4449 0.6441 4.3099 13 8 9.4314 2.0727 4.2816 14 6 10.1437 0.0869 5.5232 15 1 10.8847 -0.6906 5.4101 16 6 9.8378 0.5705 6.7777 17 7 10.4480 0.0846 7.8366 18 14 8.5566 1.9158 6.9732 19 1 9.2170 3.2436 6.8945 20 1 7.5477 1.7997 5.8898 21 1 7.8867 1.7735 8.2908 22 6 8.0719 0.0043 4.0367 23 6 3.5805 -1.1972 -0.0028 24 6 2.1982 -1.1972 0.0011 25 1 -0.3634 -0.0001 -1.0276 26 1 -0.3634 -0.8899 0.5139 27 1 -0.3634 0.8900 0.5138 28 1 1.6582 2.1325 -0.0004 29 1 4.1206 2.1324 0.0001 30 1 6.1424 0.8895 -0.5111 31 1 6.1424 -0.8904 -0.5097 32 1 5.9238 -0.8886 1.9603 33 1 5.9239 0.8914 1.9589 34 1 10.5102 0.6566 2.3669 35 1 10.3217 -0.9945 3.1028 36 1 9.1205 2.4794 5.1020 37 1 10.2331 0.4252 8.7190 38 1 7.9591 -0.9924 4.4631 39 1 7.2299 0.6605 4.2573 40 1 4.1205 -2.1325 -0.0061 41 1 1.6582 -2.1325 0.0014 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000193138533.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:24 Heat of formation + Delta-G solvation = -45.316893 kcal Electronic energy + Delta-G solvation = -22231.726266 eV Core-core repulsion = 18883.916696 eV Total energy + Delta-G solvation = -3347.809570 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.43553 -40.38363 -39.32061 -36.26383 -35.51504 -34.55177 -32.36282 -31.79748 -30.63028 -28.33209 -27.12927 -26.88766 -24.28787 -23.59781 -21.96722 -21.39422 -20.11395 -19.34116 -18.21511 -18.15235 -17.02303 -16.88604 -16.62648 -16.27214 -15.88139 -15.54819 -15.37491 -15.05811 -14.64607 -14.46492 -14.35801 -14.24667 -13.96601 -13.69855 -13.63298 -13.33578 -12.99924 -12.94542 -12.67443 -12.48083 -12.41499 -12.15929 -11.94724 -11.90554 -11.71817 -11.42611 -11.11136 -10.85696 -10.47520 -9.81317 -9.66792 -9.37043 -8.42882 -6.55317 0.40524 0.51564 1.25032 1.28186 1.40820 1.60076 1.88499 2.17694 2.76535 2.83689 3.20282 3.48272 3.84115 3.88297 3.98774 4.07442 4.13313 4.17722 4.19611 4.35260 4.42845 4.50099 4.53010 4.61486 4.66627 4.70170 4.81297 4.85011 4.86446 4.91878 4.95526 4.97505 5.13925 5.23077 5.29139 5.32616 5.53296 5.72523 5.74863 6.03499 6.14837 6.52441 6.65441 6.78704 7.09324 7.13702 8.72633 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.020707 B = 0.003456 C = 0.003168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1351.883982 B = 8098.794295 C = 8836.104318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.100 4.100 3 C -0.128 4.128 4 C -0.124 4.124 5 C -0.097 4.097 6 C -0.055 4.055 7 C -0.117 4.117 8 C 0.525 3.475 9 O -0.593 6.593 10 N -0.637 5.637 11 C 0.122 3.878 12 C 0.183 3.817 13 O -0.561 6.561 14 C -0.544 4.544 15 H 0.056 0.944 16 C 0.027 3.973 17 N -0.924 5.924 18 Si 0.919 3.081 19 H -0.258 1.258 20 H -0.228 1.228 21 H -0.281 1.281 22 C 0.078 3.922 23 C -0.122 4.122 24 C -0.127 4.127 25 H 0.077 0.923 26 H 0.074 0.926 27 H 0.073 0.927 28 H 0.137 0.863 29 H 0.127 0.873 30 H 0.068 0.932 31 H 0.072 0.928 32 H 0.109 0.891 33 H 0.102 0.898 34 H 0.067 0.933 35 H 0.101 0.899 36 H 0.356 0.644 37 H 0.274 0.726 38 H 0.106 0.894 39 H 0.088 0.912 40 H 0.130 0.870 41 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.817 0.378 -11.819 23.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.100 4.100 3 C -0.146 4.146 4 C -0.142 4.142 5 C -0.097 4.097 6 C -0.093 4.093 7 C -0.156 4.156 8 C 0.317 3.683 9 O -0.475 6.475 10 N -0.370 5.370 11 C -0.001 4.001 12 C 0.143 3.857 13 O -0.373 6.373 14 C -0.582 4.582 15 H 0.074 0.926 16 C -0.174 4.174 17 N -0.562 5.562 18 Si 0.743 3.257 19 H -0.184 1.184 20 H -0.152 1.152 21 H -0.208 1.208 22 C -0.045 4.045 23 C -0.139 4.139 24 C -0.145 4.145 25 H 0.096 0.904 26 H 0.093 0.907 27 H 0.092 0.908 28 H 0.155 0.845 29 H 0.145 0.855 30 H 0.087 0.913 31 H 0.091 0.909 32 H 0.127 0.873 33 H 0.120 0.880 34 H 0.086 0.914 35 H 0.119 0.881 36 H 0.208 0.792 37 H 0.083 0.917 38 H 0.124 0.876 39 H 0.106 0.894 40 H 0.148 0.852 41 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -20.374 0.273 -12.944 24.139 hybrid contribution 0.157 0.490 1.106 1.220 sum -20.217 0.762 -11.838 23.440 Atomic orbital electron populations 1.20828 0.89488 1.03573 1.03007 1.20288 0.97495 0.93060 0.99153 1.21286 0.93910 0.98574 1.00798 1.21257 0.94826 0.97815 1.00268 1.19861 0.94731 0.93974 1.01133 1.20200 0.90818 1.03549 0.94695 1.21570 0.88603 1.05764 0.99684 1.21032 0.91210 0.74814 0.81266 1.90629 1.71673 1.53487 1.31718 1.50147 1.09185 1.71587 1.06100 1.23249 0.83524 1.00513 0.92808 1.20607 0.92893 0.78503 0.93724 1.86474 1.89533 1.20823 1.40437 1.21354 1.24155 1.22340 0.90317 0.92594 1.25847 0.97748 0.98551 0.95294 1.70001 1.43002 1.43670 0.99516 0.86334 0.80383 0.79742 0.79206 1.18435 1.15153 1.20769 1.24437 1.00088 1.02528 0.77461 1.21261 0.94780 0.97786 1.00122 1.21300 0.93948 0.98541 1.00708 0.90404 0.90741 0.90833 0.84474 0.85536 0.91325 0.90944 0.87317 0.88000 0.91428 0.88128 0.79163 0.91694 0.87606 0.89356 0.85212 0.84326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.23 10.01 71.24 0.71 -0.51 16 2 C -0.10 -1.67 5.88 -19.87 -0.12 -1.78 16 3 C -0.13 -2.27 9.70 22.27 0.22 -2.05 16 4 C -0.12 -2.52 9.70 22.27 0.22 -2.31 16 5 C -0.10 -2.12 5.13 -19.87 -0.10 -2.22 16 6 C -0.05 -1.36 4.63 29.85 0.14 -1.22 16 7 C -0.12 -3.08 5.43 29.85 0.16 -2.92 16 8 C 0.52 18.99 8.06 87.65 0.71 19.70 16 9 O -0.59 -25.30 16.71 -3.02 -0.05 -25.35 16 10 N -0.64 -24.18 3.61 -840.32 -3.03 -27.21 16 11 C 0.12 5.03 8.23 86.48 0.71 5.74 16 12 C 0.18 8.09 1.06 -10.89 -0.01 8.07 16 13 O -0.56 -25.21 13.32 -148.98 -1.98 -27.19 16 14 C -0.54 -28.11 9.20 25.60 0.24 -27.87 16 15 H 0.06 3.19 8.06 -2.91 -0.02 3.17 16 16 C 0.03 1.39 5.47 84.66 0.46 1.85 16 17 N -0.92 -52.32 13.96 21.45 0.30 -52.02 16 18 Si 0.92 37.21 24.34 68.60 1.67 38.88 16 19 H -0.26 -10.13 7.06 99.48 0.70 -9.43 16 20 H -0.23 -8.06 5.28 99.48 0.53 -7.54 16 21 H -0.28 -11.30 7.11 99.48 0.71 -10.59 16 22 C 0.08 2.85 7.20 86.47 0.62 3.47 16 23 C -0.12 -2.40 9.70 22.27 0.22 -2.19 16 24 C -0.13 -2.20 9.70 22.27 0.22 -1.99 16 25 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 26 H 0.07 0.68 8.09 -2.39 -0.02 0.67 16 27 H 0.07 0.69 8.09 -2.39 -0.02 0.67 16 28 H 0.14 1.86 8.06 -2.91 -0.02 1.83 16 29 H 0.13 2.36 8.06 -2.91 -0.02 2.33 16 30 H 0.07 1.83 8.04 -2.39 -0.02 1.81 16 31 H 0.07 1.87 8.04 -2.39 -0.02 1.85 16 32 H 0.11 2.50 8.14 -2.38 -0.02 2.48 16 33 H 0.10 2.49 8.14 -2.39 -0.02 2.47 16 34 H 0.07 2.86 8.14 -2.39 -0.02 2.84 16 35 H 0.10 3.96 8.09 -2.38 -0.02 3.94 16 36 H 0.36 14.84 3.31 -74.06 -0.24 14.60 16 37 H 0.27 14.39 8.31 -92.71 -0.77 13.62 16 38 H 0.11 3.67 8.09 -2.39 -0.02 3.65 16 39 H 0.09 2.91 6.98 -2.39 -0.02 2.89 16 40 H 0.13 2.26 8.06 -2.91 -0.02 2.24 16 41 H 0.14 1.79 8.06 -2.91 -0.02 1.76 16 Total: -1.00 -65.05 340.39 1.88 -63.17 By element: Atomic # 1 Polarization: 35.38 SS G_CDS: 0.59 Total: 35.97 kcal Atomic # 6 Polarization: -10.63 SS G_CDS: 4.39 Total: -6.24 kcal Atomic # 7 Polarization: -76.50 SS G_CDS: -2.73 Total: -79.23 kcal Atomic # 8 Polarization: -50.51 SS G_CDS: -2.03 Total: -52.55 kcal Atomic # 14 Polarization: 37.21 SS G_CDS: 1.67 Total: 38.88 kcal Total: -65.05 1.88 -63.17 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193138533.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.849 kcal (2) G-P(sol) polarization free energy of solvation -65.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds