Wall clock time and date at job start Tue Mar 31 2020 06:01:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38243 * 119.99604 * 2 1 4 4 C 1.38235 * 119.99602 * 179.97438 * 3 2 1 5 5 C 1.38230 * 120.00326 * 359.97438 * 4 3 2 6 6 C 1.38234 * 119.99880 * 359.97438 * 5 4 3 7 7 C 1.50702 * 120.00272 * 179.97438 * 6 5 4 8 8 C 1.38232 * 120.00317 * 179.88287 * 2 1 3 9 9 C 1.50701 * 119.99886 * 0.06776 * 8 2 1 10 10 C 1.50699 * 109.47334 * 269.88783 * 9 8 2 11 11 O 1.21280 * 119.99738 * 359.97438 * 10 9 8 12 12 N 1.34779 * 120.00025 * 179.97438 * 10 9 8 13 13 C 1.47060 * 136.05680 * 359.62978 * 12 10 9 14 14 C 1.53235 * 88.08416 * 207.20206 * 13 12 10 15 15 O 1.42904 * 114.01770 * 87.71311 * 14 13 12 16 16 C 1.50697 * 114.32823 * 220.47106 * 14 13 12 17 17 H 1.08004 * 120.00153 * 93.75660 * 16 14 13 18 18 C 1.37877 * 120.00249 * 273.75817 * 16 14 13 19 19 N 1.31514 * 119.99567 * 359.97438 * 18 16 14 20 20 Si 1.86799 * 120.00129 * 179.97438 * 18 16 14 21 21 H 1.48498 * 109.47030 * 90.00110 * 20 18 16 22 22 H 1.48495 * 109.46954 * 209.99742 * 20 18 16 23 23 H 1.48495 * 109.47189 * 330.00290 * 20 18 16 24 24 C 1.47066 * 136.05354 * 179.97438 * 12 10 9 25 25 H 1.09001 * 109.47060 * 90.00349 * 1 2 3 26 26 H 1.08998 * 109.46941 * 210.00293 * 1 2 3 27 27 H 1.08998 * 109.47482 * 330.00442 * 1 2 3 28 28 H 1.08000 * 119.99728 * 0.24800 * 3 2 1 29 29 H 1.08000 * 119.99297 * 179.97438 * 4 3 2 30 30 H 1.08001 * 120.00350 * 179.97438 * 5 4 3 31 31 H 1.09001 * 109.47016 * 89.99632 * 7 6 5 32 32 H 1.08999 * 109.47577 * 209.99738 * 7 6 5 33 33 H 1.09003 * 109.46594 * 329.99406 * 7 6 5 34 34 H 1.09002 * 109.47167 * 29.88991 * 9 8 2 35 35 H 1.08996 * 109.46945 * 149.88447 * 9 8 2 36 36 H 1.08996 * 113.47078 * 321.93552 * 13 12 10 37 37 H 1.08996 * 113.46969 * 92.37439 * 13 12 10 38 38 H 0.96705 * 113.99610 * 86.39125 * 15 14 13 39 39 H 0.96999 * 119.99627 * 179.97438 * 19 18 16 40 40 H 1.08991 * 113.46896 * 267.62368 * 24 12 10 41 41 H 1.08994 * 113.46758 * 38.07086 * 24 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1982 1.1973 0.0000 4 6 3.5805 1.1973 0.0005 5 6 4.2718 0.0002 0.0016 6 6 3.5806 -1.1970 0.0027 7 6 4.3341 -2.5021 0.0033 8 6 2.1983 -1.1971 0.0024 9 6 1.4448 -2.5022 0.0036 10 6 1.1946 -2.9366 1.4247 11 8 1.5897 -2.2539 2.3460 12 7 0.5318 -4.0838 1.6720 13 6 -0.0887 -5.1437 0.8630 14 6 -1.0417 -5.4080 2.0335 15 8 -2.2226 -4.6034 2.0151 16 6 -1.3151 -6.8668 2.2942 17 1 -0.7231 -7.4061 3.0189 18 6 -2.3210 -7.5132 1.6077 19 7 -3.0422 -6.8565 0.7256 20 14 -2.6593 -9.3218 1.9304 21 1 -3.6593 -9.4514 3.0205 22 1 -3.1885 -9.9543 0.6955 23 1 -1.3993 -9.9971 2.3318 24 6 0.1056 -4.8235 2.8695 25 1 -0.3633 -0.0001 -1.0277 26 1 -0.3633 -0.8900 0.5139 27 1 -0.3634 0.8900 0.5137 28 1 1.6581 2.1325 0.0040 29 1 4.1204 2.1326 0.0001 30 1 5.3518 0.0002 0.0016 31 1 4.5162 -2.8160 1.0311 32 1 3.7449 -3.2621 -0.5098 33 1 5.2863 -2.3720 -0.5111 34 1 0.4921 -2.3722 -0.5097 35 1 2.0336 -3.2620 -0.5103 36 1 -0.5920 -4.7706 -0.0289 37 1 0.5812 -5.9772 0.6520 38 1 -2.9432 -4.9745 1.4876 39 1 -3.7497 -7.3113 0.2423 40 1 0.8277 -5.5709 3.1979 41 1 -0.2329 -4.1786 3.6804 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000193968829.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:18 Heat of formation + Delta-G solvation = -31.682217 kcal Electronic energy + Delta-G solvation = -23097.366889 eV Core-core repulsion = 19750.148563 eV Total energy + Delta-G solvation = -3347.218326 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.12441 -39.15448 -37.24209 -34.00222 -33.48815 -33.14013 -32.21335 -29.53530 -28.11876 -26.56158 -26.46186 -25.14214 -24.89444 -21.22324 -20.59296 -19.94208 -18.20385 -17.44316 -16.35849 -16.10865 -16.05528 -15.34915 -14.91807 -14.54198 -14.42333 -14.11366 -13.73339 -13.21380 -13.10012 -12.93487 -12.84029 -12.66544 -12.57182 -12.35594 -12.13093 -11.87856 -11.57801 -11.51661 -11.32242 -11.09659 -11.01752 -10.77295 -10.71411 -10.49978 -10.27763 -9.64785 -9.20740 -8.79891 -8.48386 -8.41407 -8.35178 -7.83703 -6.42750 -4.53037 1.47136 1.50451 3.13029 3.21008 3.22328 3.24494 3.53800 3.93021 4.16433 4.77939 4.80424 4.87969 5.01359 5.04947 5.16969 5.24385 5.38246 5.51768 5.56963 5.59680 5.71035 5.74229 5.77656 5.82243 5.93341 5.94192 6.02359 6.18700 6.26328 6.35292 6.40400 6.49931 6.58219 6.62193 6.66612 6.68590 6.81939 7.09171 7.15718 7.60661 7.78591 8.49498 8.54679 8.80408 9.18562 9.47028 10.63893 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.031355 B = 0.003737 C = 0.003567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.795704 B = 7491.746039 C = 7847.767468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.066 4.066 3 C -0.128 4.128 4 C -0.118 4.118 5 C -0.129 4.129 6 C -0.069 4.069 7 C -0.118 4.118 8 C -0.058 4.058 9 C -0.102 4.102 10 C 0.539 3.461 11 O -0.554 6.554 12 N -0.637 5.637 13 C 0.071 3.929 14 C 0.240 3.760 15 O -0.572 6.572 16 C -0.534 4.534 17 H 0.072 0.928 18 C 0.072 3.928 19 N -0.898 5.898 20 Si 0.909 3.091 21 H -0.277 1.277 22 H -0.283 1.283 23 H -0.271 1.271 24 C 0.107 3.893 25 H 0.070 0.930 26 H 0.070 0.930 27 H 0.066 0.934 28 H 0.119 0.881 29 H 0.118 0.882 30 H 0.118 0.882 31 H 0.072 0.928 32 H 0.067 0.933 33 H 0.064 0.936 34 H 0.100 0.900 35 H 0.099 0.901 36 H 0.064 0.936 37 H 0.081 0.919 38 H 0.394 0.606 39 H 0.274 0.726 40 H 0.084 0.916 41 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.014 8.526 -5.609 13.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.066 4.066 3 C -0.146 4.146 4 C -0.136 4.136 5 C -0.147 4.147 6 C -0.069 4.069 7 C -0.174 4.174 8 C -0.059 4.059 9 C -0.142 4.142 10 C 0.328 3.672 11 O -0.434 6.434 12 N -0.371 5.371 13 C -0.052 4.052 14 C 0.198 3.802 15 O -0.385 6.385 16 C -0.572 4.572 17 H 0.091 0.909 18 C -0.130 4.130 19 N -0.539 5.539 20 Si 0.736 3.264 21 H -0.202 1.202 22 H -0.209 1.209 23 H -0.195 1.195 24 C -0.015 4.015 25 H 0.089 0.911 26 H 0.089 0.911 27 H 0.085 0.915 28 H 0.137 0.863 29 H 0.136 0.864 30 H 0.136 0.864 31 H 0.091 0.909 32 H 0.086 0.914 33 H 0.083 0.917 34 H 0.118 0.882 35 H 0.117 0.883 36 H 0.082 0.918 37 H 0.099 0.901 38 H 0.250 0.750 39 H 0.084 0.916 40 H 0.102 0.898 41 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 9.529 9.434 -4.928 14.286 hybrid contribution -0.490 -1.282 -0.348 1.415 sum 9.039 8.153 -5.276 13.267 Atomic orbital electron populations 1.20851 0.91259 1.03365 1.02061 1.19726 0.95999 0.92505 0.98332 1.20918 0.94220 0.97163 1.02326 1.21016 0.94268 0.97681 1.00654 1.20884 0.99343 0.91961 1.02514 1.19676 0.92991 0.95417 0.98809 1.20863 0.99463 0.94472 1.02640 1.19050 0.92759 0.93400 1.00657 1.20662 1.01975 0.95753 0.95786 1.19798 0.76969 0.79914 0.90495 1.90658 1.52144 1.54051 1.46513 1.49733 1.54314 1.20079 1.12964 1.24157 0.95265 0.87003 0.98771 1.19495 0.82542 0.89068 0.89105 1.86049 1.25872 1.50891 1.75668 1.21439 1.18104 0.93695 1.23941 0.90947 1.25074 0.94878 0.99466 0.93602 1.69260 1.21667 1.37466 1.25501 0.86312 0.78849 0.83300 0.77962 1.20231 1.20901 1.19534 1.23309 0.95258 0.92843 0.90125 0.91132 0.91105 0.91518 0.86347 0.86423 0.86411 0.90929 0.91376 0.91705 0.88201 0.88279 0.91784 0.90121 0.74998 0.91574 0.89825 0.91671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.64 9.20 36.01 0.33 -1.31 16 2 C -0.07 -0.99 5.88 -104.62 -0.62 -1.60 16 3 C -0.13 -1.70 9.70 -39.58 -0.38 -2.09 16 4 C -0.12 -1.47 10.05 -39.59 -0.40 -1.86 16 5 C -0.13 -1.67 9.70 -39.59 -0.38 -2.06 16 6 C -0.07 -1.00 5.88 -104.62 -0.62 -1.62 16 7 C -0.12 -1.47 9.61 36.01 0.35 -1.12 16 8 C -0.06 -0.92 4.37 -104.62 -0.46 -1.38 16 9 C -0.10 -1.65 4.57 -29.03 -0.13 -1.78 16 10 C 0.54 10.91 7.67 -10.99 -0.08 10.83 16 11 O -0.55 -12.94 16.81 5.56 0.09 -12.84 16 12 N -0.64 -13.35 3.69 -185.37 -0.68 -14.03 16 13 C 0.07 1.49 7.82 -8.64 -0.07 1.42 16 14 C 0.24 5.67 1.57 -91.38 -0.14 5.52 16 15 O -0.57 -14.57 13.53 -35.23 -0.48 -15.05 16 16 C -0.53 -13.14 8.69 -34.44 -0.30 -13.43 16 17 H 0.07 1.73 7.81 -52.48 -0.41 1.32 16 18 C 0.07 1.76 5.40 -17.82 -0.10 1.66 16 19 N -0.90 -22.29 11.01 55.43 0.61 -21.68 16 20 Si 0.91 19.07 29.54 -169.99 -5.02 14.05 16 21 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 22 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 23 H -0.27 -5.62 7.11 56.52 0.40 -5.21 16 24 C 0.11 2.34 8.04 -8.49 -0.07 2.27 16 25 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 26 H 0.07 1.14 6.37 -51.93 -0.33 0.81 16 27 H 0.07 0.83 8.09 -51.93 -0.42 0.41 16 28 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 29 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 30 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16 31 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 32 H 0.07 0.81 5.95 -51.93 -0.31 0.50 16 33 H 0.06 0.65 8.09 -51.93 -0.42 0.23 16 34 H 0.10 1.52 6.70 -51.93 -0.35 1.17 16 35 H 0.10 1.40 5.95 -51.93 -0.31 1.09 16 36 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 37 H 0.08 1.59 8.10 -51.93 -0.42 1.17 16 38 H 0.39 10.10 6.33 45.56 0.29 10.39 16 39 H 0.27 6.46 8.31 -40.82 -0.34 6.12 16 40 H 0.08 1.67 8.10 -51.93 -0.42 1.25 16 41 H 0.06 1.47 8.14 -51.93 -0.42 1.05 16 LS Contribution 340.56 15.07 5.13 5.13 Total: -1.00 -28.79 340.56 -8.61 -37.39 By element: Atomic # 1 Polarization: 18.76 SS G_CDS: -5.19 Total: 13.57 kcal Atomic # 6 Polarization: -3.47 SS G_CDS: -3.07 Total: -6.54 kcal Atomic # 7 Polarization: -35.64 SS G_CDS: -0.07 Total: -35.71 kcal Atomic # 8 Polarization: -27.51 SS G_CDS: -0.38 Total: -27.89 kcal Atomic # 14 Polarization: 19.07 SS G_CDS: -5.02 Total: 14.05 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -28.79 -8.61 -37.39 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193968829.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.713 kcal (2) G-P(sol) polarization free energy of solvation -28.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds