Wall clock time and date at job start Tue Mar 31 2020 06:01:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38243 * 119.99604 * 2 1 4 4 C 1.38235 * 119.99602 * 179.97438 * 3 2 1 5 5 C 1.38230 * 120.00326 * 359.97438 * 4 3 2 6 6 C 1.38234 * 119.99880 * 359.97438 * 5 4 3 7 7 C 1.50702 * 120.00272 * 179.97438 * 6 5 4 8 8 C 1.38232 * 120.00317 * 179.88287 * 2 1 3 9 9 C 1.50701 * 119.99886 * 0.06776 * 8 2 1 10 10 C 1.50699 * 109.47334 * 269.88783 * 9 8 2 11 11 O 1.21280 * 119.99738 * 359.97438 * 10 9 8 12 12 N 1.34779 * 120.00025 * 179.97438 * 10 9 8 13 13 C 1.47060 * 136.05680 * 359.62978 * 12 10 9 14 14 C 1.53235 * 88.08416 * 207.20206 * 13 12 10 15 15 O 1.42904 * 114.01770 * 87.71311 * 14 13 12 16 16 C 1.50697 * 114.32823 * 220.47106 * 14 13 12 17 17 H 1.08004 * 120.00153 * 93.75660 * 16 14 13 18 18 C 1.37877 * 120.00249 * 273.75817 * 16 14 13 19 19 N 1.31514 * 119.99567 * 359.97438 * 18 16 14 20 20 Si 1.86799 * 120.00129 * 179.97438 * 18 16 14 21 21 H 1.48498 * 109.47030 * 90.00110 * 20 18 16 22 22 H 1.48495 * 109.46954 * 209.99742 * 20 18 16 23 23 H 1.48495 * 109.47189 * 330.00290 * 20 18 16 24 24 C 1.47066 * 136.05354 * 179.97438 * 12 10 9 25 25 H 1.09001 * 109.47060 * 90.00349 * 1 2 3 26 26 H 1.08998 * 109.46941 * 210.00293 * 1 2 3 27 27 H 1.08998 * 109.47482 * 330.00442 * 1 2 3 28 28 H 1.08000 * 119.99728 * 0.24800 * 3 2 1 29 29 H 1.08000 * 119.99297 * 179.97438 * 4 3 2 30 30 H 1.08001 * 120.00350 * 179.97438 * 5 4 3 31 31 H 1.09001 * 109.47016 * 89.99632 * 7 6 5 32 32 H 1.08999 * 109.47577 * 209.99738 * 7 6 5 33 33 H 1.09003 * 109.46594 * 329.99406 * 7 6 5 34 34 H 1.09002 * 109.47167 * 29.88991 * 9 8 2 35 35 H 1.08996 * 109.46945 * 149.88447 * 9 8 2 36 36 H 1.08996 * 113.47078 * 321.93552 * 13 12 10 37 37 H 1.08996 * 113.46969 * 92.37439 * 13 12 10 38 38 H 0.96705 * 113.99610 * 86.39125 * 15 14 13 39 39 H 0.96999 * 119.99627 * 179.97438 * 19 18 16 40 40 H 1.08991 * 113.46896 * 267.62368 * 24 12 10 41 41 H 1.08994 * 113.46758 * 38.07086 * 24 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1982 1.1973 0.0000 4 6 3.5805 1.1973 0.0005 5 6 4.2718 0.0002 0.0016 6 6 3.5806 -1.1970 0.0027 7 6 4.3341 -2.5021 0.0033 8 6 2.1983 -1.1971 0.0024 9 6 1.4448 -2.5022 0.0036 10 6 1.1946 -2.9366 1.4247 11 8 1.5897 -2.2539 2.3460 12 7 0.5318 -4.0838 1.6720 13 6 -0.0887 -5.1437 0.8630 14 6 -1.0417 -5.4080 2.0335 15 8 -2.2226 -4.6034 2.0151 16 6 -1.3151 -6.8668 2.2942 17 1 -0.7231 -7.4061 3.0189 18 6 -2.3210 -7.5132 1.6077 19 7 -3.0422 -6.8565 0.7256 20 14 -2.6593 -9.3218 1.9304 21 1 -3.6593 -9.4514 3.0205 22 1 -3.1885 -9.9543 0.6955 23 1 -1.3993 -9.9971 2.3318 24 6 0.1056 -4.8235 2.8695 25 1 -0.3633 -0.0001 -1.0277 26 1 -0.3633 -0.8900 0.5139 27 1 -0.3634 0.8900 0.5137 28 1 1.6581 2.1325 0.0040 29 1 4.1204 2.1326 0.0001 30 1 5.3518 0.0002 0.0016 31 1 4.5162 -2.8160 1.0311 32 1 3.7449 -3.2621 -0.5098 33 1 5.2863 -2.3720 -0.5111 34 1 0.4921 -2.3722 -0.5097 35 1 2.0336 -3.2620 -0.5103 36 1 -0.5920 -4.7706 -0.0289 37 1 0.5812 -5.9772 0.6520 38 1 -2.9432 -4.9745 1.4876 39 1 -3.7497 -7.3113 0.2423 40 1 0.8277 -5.5709 3.1979 41 1 -0.2329 -4.1786 3.6804 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000193968829.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:18 Heat of formation + Delta-G solvation = -48.813507 kcal Electronic energy + Delta-G solvation = -23098.109758 eV Core-core repulsion = 19750.148563 eV Total energy + Delta-G solvation = -3347.961195 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.53915 -40.54887 -38.88456 -35.87539 -34.50594 -34.29086 -34.12171 -31.03403 -29.48957 -27.81291 -27.54775 -26.87629 -26.49033 -22.55484 -21.61763 -21.46889 -19.89623 -19.24474 -17.96080 -17.35484 -17.29821 -17.00024 -16.45457 -16.10850 -15.91712 -15.42866 -15.04087 -14.76478 -14.51068 -14.11928 -14.03871 -13.83781 -13.80731 -13.76263 -13.57755 -13.40791 -13.23406 -12.79043 -12.76949 -12.53377 -12.44473 -12.21544 -12.15181 -11.80476 -11.74655 -11.40621 -10.95437 -10.64551 -10.24540 -9.59197 -9.49639 -9.42800 -8.27273 -6.44335 0.41058 0.48049 1.47637 1.51225 1.59976 1.63874 1.99351 2.41313 2.82066 2.95248 3.58028 3.66094 3.83799 3.86192 4.00130 4.10358 4.15169 4.17320 4.38249 4.41967 4.47110 4.53922 4.61616 4.69495 4.75159 4.76985 4.78161 4.81516 4.91775 4.93611 4.94327 4.99534 5.23944 5.26959 5.33205 5.58724 5.63854 5.73195 5.75711 5.91232 6.15922 6.61526 6.88865 7.16430 7.29981 7.49455 8.78907 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.031355 B = 0.003737 C = 0.003567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.795704 B = 7491.746039 C = 7847.767468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.087 4.087 3 C -0.137 4.137 4 C -0.117 4.117 5 C -0.135 4.135 6 C -0.085 4.085 7 C -0.116 4.116 8 C -0.087 4.087 9 C -0.091 4.091 10 C 0.536 3.464 11 O -0.589 6.589 12 N -0.639 5.639 13 C 0.087 3.913 14 C 0.219 3.781 15 O -0.587 6.587 16 C -0.553 4.553 17 H 0.074 0.926 18 C 0.034 3.966 19 N -0.917 5.917 20 Si 0.970 3.030 21 H -0.280 1.280 22 H -0.280 1.280 23 H -0.265 1.265 24 C 0.106 3.894 25 H 0.088 0.912 26 H 0.040 0.960 27 H 0.076 0.924 28 H 0.140 0.860 29 H 0.149 0.851 30 H 0.144 0.856 31 H 0.057 0.943 32 H 0.069 0.931 33 H 0.090 0.910 34 H 0.105 0.895 35 H 0.118 0.882 36 H 0.064 0.936 37 H 0.096 0.904 38 H 0.389 0.611 39 H 0.277 0.723 40 H 0.102 0.898 41 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.331 8.710 -6.612 15.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.087 4.087 3 C -0.154 4.154 4 C -0.135 4.135 5 C -0.153 4.153 6 C -0.085 4.085 7 C -0.172 4.172 8 C -0.087 4.087 9 C -0.130 4.130 10 C 0.328 3.672 11 O -0.470 6.470 12 N -0.373 5.373 13 C -0.036 4.036 14 C 0.178 3.822 15 O -0.400 6.400 16 C -0.591 4.591 17 H 0.092 0.908 18 C -0.167 4.167 19 N -0.557 5.557 20 Si 0.795 3.205 21 H -0.206 1.206 22 H -0.205 1.205 23 H -0.189 1.189 24 C -0.017 4.017 25 H 0.107 0.893 26 H 0.059 0.941 27 H 0.095 0.905 28 H 0.158 0.842 29 H 0.167 0.833 30 H 0.161 0.839 31 H 0.076 0.924 32 H 0.088 0.912 33 H 0.109 0.891 34 H 0.123 0.877 35 H 0.136 0.864 36 H 0.083 0.917 37 H 0.114 0.886 38 H 0.245 0.755 39 H 0.087 0.913 40 H 0.120 0.880 41 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 10.854 9.621 -5.940 15.673 hybrid contribution -0.890 -1.254 0.000 1.537 sum 9.964 8.367 -5.940 14.303 Atomic orbital electron populations 1.20823 0.91071 1.02323 1.02938 1.19992 0.96506 0.93181 0.99030 1.21243 0.94994 0.97381 1.01830 1.21443 0.94139 0.98909 0.98960 1.21267 1.00781 0.91605 1.01661 1.20005 0.92802 0.96903 0.98833 1.20875 1.00616 0.93712 1.02045 1.19183 0.93609 0.93250 1.02685 1.20614 1.02751 0.96872 0.92776 1.20555 0.75803 0.78898 0.91955 1.90626 1.53526 1.54812 1.48066 1.49798 1.54558 1.20480 1.12440 1.23958 0.94672 0.87297 0.97691 1.19769 0.82445 0.88890 0.91124 1.86036 1.26596 1.51540 1.75831 1.21658 1.18806 0.94226 1.24413 0.90782 1.25752 0.94582 1.03029 0.93325 1.69320 1.21852 1.38721 1.25851 0.85360 0.78587 0.78923 0.77602 1.20559 1.20536 1.18939 1.23323 0.95319 0.93104 0.89966 0.89311 0.94074 0.90496 0.84207 0.83316 0.83864 0.92387 0.91218 0.89109 0.87720 0.86371 0.91734 0.88606 0.75466 0.91319 0.87999 0.93294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.15 9.20 71.24 0.66 -2.49 16 2 C -0.09 -2.55 5.88 -19.86 -0.12 -2.67 16 3 C -0.14 -3.37 9.70 22.27 0.22 -3.15 16 4 C -0.12 -2.58 10.05 22.27 0.22 -2.36 16 5 C -0.14 -3.19 9.70 22.27 0.22 -2.97 16 6 C -0.09 -2.36 5.88 -19.87 -0.12 -2.48 16 7 C -0.12 -2.73 9.61 71.24 0.68 -2.04 16 8 C -0.09 -2.70 4.37 -19.87 -0.09 -2.78 16 9 C -0.09 -2.91 4.57 29.10 0.13 -2.78 16 10 C 0.54 21.92 7.67 87.66 0.67 22.59 16 11 O -0.59 -28.00 16.81 -3.03 -0.05 -28.05 16 12 N -0.64 -26.92 3.69 -859.26 -3.17 -30.09 16 13 C 0.09 3.60 7.82 83.09 0.65 4.25 16 14 C 0.22 10.44 1.57 -11.29 -0.02 10.42 16 15 O -0.59 -30.60 13.53 -148.98 -2.02 -32.62 16 16 C -0.55 -27.12 8.69 25.60 0.22 -26.90 16 17 H 0.07 3.52 7.81 -2.91 -0.02 3.49 16 18 C 0.03 1.62 5.40 84.65 0.46 2.08 16 19 N -0.92 -45.35 11.01 21.45 0.24 -45.11 16 20 Si 0.97 38.52 29.54 68.60 2.03 40.55 16 21 H -0.28 -11.19 7.11 99.48 0.71 -10.48 16 22 H -0.28 -10.89 7.11 99.48 0.71 -10.18 16 23 H -0.27 -10.21 7.11 99.48 0.71 -9.50 16 24 C 0.11 4.67 8.04 83.19 0.67 5.34 16 25 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 26 H 0.04 1.35 6.37 -2.39 -0.02 1.33 16 27 H 0.08 1.87 8.09 -2.39 -0.02 1.85 16 28 H 0.14 2.72 8.06 -2.91 -0.02 2.69 16 29 H 0.15 2.29 8.06 -2.91 -0.02 2.26 16 30 H 0.14 2.53 8.06 -2.91 -0.02 2.51 16 31 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 32 H 0.07 1.57 5.95 -2.39 -0.01 1.55 16 33 H 0.09 1.60 8.09 -2.39 -0.02 1.58 16 34 H 0.10 3.20 6.70 -2.39 -0.02 3.18 16 35 H 0.12 3.24 5.95 -2.39 -0.01 3.22 16 36 H 0.06 2.65 8.14 -2.39 -0.02 2.63 16 37 H 0.10 3.67 8.10 -2.39 -0.02 3.65 16 38 H 0.39 20.46 6.33 -74.05 -0.47 19.99 16 39 H 0.28 12.95 8.31 -92.71 -0.77 12.18 16 40 H 0.10 4.06 8.10 -2.39 -0.02 4.05 16 41 H 0.05 2.28 8.14 -2.39 -0.02 2.26 16 Total: -1.00 -61.55 340.56 2.06 -59.49 By element: Atomic # 1 Polarization: 41.20 SS G_CDS: 0.57 Total: 41.77 kcal Atomic # 6 Polarization: -10.41 SS G_CDS: 4.46 Total: -5.95 kcal Atomic # 7 Polarization: -72.26 SS G_CDS: -2.94 Total: -75.20 kcal Atomic # 8 Polarization: -58.59 SS G_CDS: -2.07 Total: -60.66 kcal Atomic # 14 Polarization: 38.52 SS G_CDS: 2.03 Total: 40.55 kcal Total: -61.55 2.06 -59.49 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193968829.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.679 kcal (2) G-P(sol) polarization free energy of solvation -61.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds