Wall clock time and date at job start Tue Mar 31 2020 05:55:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38263 * 120.00273 * 2 1 4 4 C 1.38207 * 119.99884 * 180.23253 * 3 2 1 5 5 C 1.38258 * 120.00568 * 359.80903 * 4 3 2 6 6 C 1.38210 * 119.99249 * 359.97438 * 5 4 3 7 7 C 1.38217 * 120.00155 * 179.79008 * 2 1 3 8 8 C 1.50696 * 119.99603 * 359.97438 * 7 2 1 9 9 C 1.52999 * 109.46955 * 84.73320 * 8 7 2 10 10 C 1.50707 * 109.47017 * 179.97438 * 9 8 7 11 11 O 1.21279 * 119.99658 * 0.02562 * 10 9 8 12 12 N 1.34771 * 120.00011 * 179.97438 * 10 9 8 13 13 C 1.47584 * 134.49657 * 179.97438 * 12 10 9 14 14 C 1.53946 * 86.12025 * 155.36378 * 13 12 10 15 15 O 1.42897 * 113.74068 * 269.15867 * 14 13 12 16 16 C 1.50700 * 113.74246 * 137.95222 * 14 13 12 17 17 H 1.07998 * 119.99659 * 4.91778 * 16 14 13 18 18 C 1.37870 * 120.00275 * 184.91298 * 16 14 13 19 19 N 1.31521 * 119.99939 * 13.83955 * 18 16 14 20 20 Si 1.86793 * 120.00241 * 193.83635 * 18 16 14 21 21 H 1.48503 * 109.47305 * 180.02562 * 20 18 16 22 22 H 1.48502 * 109.47166 * 299.99995 * 20 18 16 23 23 H 1.48499 * 109.46987 * 59.99962 * 20 18 16 24 24 C 1.47585 * 134.49296 * 0.02562 * 12 10 9 25 25 H 1.09003 * 109.47471 * 270.21116 * 1 2 3 26 26 H 1.09007 * 109.46849 * 30.21641 * 1 2 3 27 27 H 1.09004 * 109.47215 * 150.21083 * 1 2 3 28 28 H 1.08001 * 119.99567 * 0.06269 * 3 2 1 29 29 H 1.08007 * 119.99869 * 179.83472 * 4 3 2 30 30 H 1.07991 * 120.00131 * 180.02562 * 5 4 3 31 31 H 1.08006 * 119.99302 * 179.97438 * 6 5 4 32 32 H 1.09002 * 109.47561 * 324.72732 * 8 7 2 33 33 H 1.09004 * 109.47099 * 204.72726 * 8 7 2 34 34 H 1.08992 * 109.47552 * 59.99932 * 9 8 7 35 35 H 1.08994 * 109.47209 * 299.99398 * 9 8 7 36 36 H 1.09003 * 113.76727 * 41.05948 * 13 12 10 37 37 H 1.09000 * 113.86995 * 269.68290 * 13 12 10 38 38 H 0.96698 * 114.00098 * 171.44601 * 15 14 13 39 39 H 0.97007 * 119.99483 * 5.87247 * 19 18 16 40 40 H 1.08994 * 113.77423 * 90.33340 * 24 12 10 41 41 H 1.09010 * 113.76672 * 318.93187 * 24 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1973 -0.0049 5 6 4.2717 -0.0001 -0.0057 6 6 3.5805 -1.1969 -0.0012 7 6 2.1980 -1.1970 0.0044 8 6 1.4445 -2.5020 0.0098 9 6 1.0743 -2.8830 -1.4251 10 6 0.3212 -4.1884 -1.4198 11 8 0.1019 -4.7576 -0.3715 12 7 -0.1093 -4.7227 -2.5797 13 6 -0.8525 -5.9450 -2.9427 14 6 -1.2868 -5.1800 -4.2060 15 8 -2.5103 -4.4586 -4.0496 16 6 -1.2521 -6.0128 -5.4616 17 1 -1.0190 -7.0658 -5.4048 18 6 -1.5180 -5.4305 -6.6826 19 7 -1.5327 -4.1203 -6.7971 20 14 -1.8573 -6.5022 -8.1744 21 1 -2.1115 -5.6395 -9.3562 22 1 -0.6809 -7.3691 -8.4390 23 1 -3.0484 -7.3499 -7.9143 24 6 -0.0260 -4.3210 -3.9974 25 1 -0.3634 0.0038 1.0277 26 1 -0.3633 0.8881 -0.5172 27 1 -0.3634 -0.8919 -0.5106 28 1 1.6583 2.1327 0.0010 29 1 4.1204 2.1326 -0.0076 30 1 5.3516 0.0000 -0.0091 31 1 4.1206 -2.1323 -0.0023 32 1 0.5365 -2.3949 0.6031 33 1 2.0714 -3.2817 0.4424 34 1 1.9823 -2.9902 -2.0184 35 1 0.4474 -2.1034 -1.8578 36 1 -1.6744 -6.1768 -2.2652 37 1 -0.2146 -6.8048 -3.1472 38 1 -2.7201 -3.8745 -4.7912 39 1 -1.2734 -3.5649 -6.0453 40 1 0.8559 -4.7031 -4.5113 41 1 -0.1879 -3.2556 -4.1623 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000193985797.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:30 Heat of formation + Delta-G solvation = -42.887719 kcal Electronic energy + Delta-G solvation = -22588.481345 eV Core-core repulsion = 19240.777112 eV Total energy + Delta-G solvation = -3347.704233 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.97532 -39.44220 -37.65465 -34.34025 -34.14839 -32.50712 -32.40787 -30.18540 -28.39664 -27.02265 -25.55535 -25.23650 -23.76383 -22.00750 -20.67256 -20.15017 -18.47786 -17.90642 -16.71801 -16.20447 -16.01301 -15.49245 -15.13171 -14.89533 -14.66249 -14.13890 -13.92897 -13.72998 -13.39575 -13.22163 -12.93856 -12.69837 -12.41173 -12.27875 -12.26432 -11.99178 -11.73759 -11.59716 -11.28046 -11.15544 -10.95606 -10.87576 -10.78834 -10.56929 -10.23571 -9.52886 -9.35323 -8.89519 -8.84755 -8.63760 -8.42676 -7.91108 -6.70881 -4.50263 1.24973 1.29280 3.10071 3.29219 3.33021 3.40789 3.51379 3.68441 4.30609 4.61148 4.71509 4.78763 4.85330 4.91390 5.08123 5.13622 5.17718 5.26045 5.36182 5.43938 5.56333 5.57876 5.62902 5.68521 5.79791 5.87077 5.95382 6.04105 6.10626 6.14929 6.25251 6.33116 6.37011 6.40000 6.41101 6.49498 6.62270 6.76424 6.93169 7.63402 8.06933 8.33850 8.42596 8.64409 8.81692 9.20115 10.60618 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.023422 B = 0.003410 C = 0.003264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1195.167028 B = 8209.138829 C = 8576.008431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.080 4.080 3 C -0.120 4.120 4 C -0.124 4.124 5 C -0.126 4.126 6 C -0.113 4.113 7 C -0.080 4.080 8 C -0.064 4.064 9 C -0.128 4.128 10 C 0.528 3.472 11 O -0.564 6.564 12 N -0.634 5.634 13 C 0.122 3.878 14 C 0.216 3.784 15 O -0.566 6.566 16 C -0.618 4.618 17 H 0.065 0.935 18 C 0.037 3.963 19 N -0.897 5.897 20 Si 1.066 2.934 21 H -0.280 1.280 22 H -0.285 1.285 23 H -0.284 1.284 24 C 0.070 3.930 25 H 0.071 0.929 26 H 0.066 0.934 27 H 0.072 0.928 28 H 0.120 0.880 29 H 0.119 0.881 30 H 0.119 0.881 31 H 0.122 0.878 32 H 0.081 0.919 33 H 0.078 0.922 34 H 0.089 0.911 35 H 0.091 0.909 36 H 0.071 0.929 37 H 0.088 0.912 38 H 0.375 0.625 39 H 0.268 0.732 40 H 0.087 0.913 41 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.365 8.963 9.112 15.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.080 4.080 3 C -0.138 4.138 4 C -0.142 4.142 5 C -0.144 4.144 6 C -0.131 4.131 7 C -0.080 4.080 8 C -0.102 4.102 9 C -0.168 4.168 10 C 0.317 3.683 11 O -0.444 6.444 12 N -0.367 5.367 13 C 0.000 4.000 14 C 0.175 3.825 15 O -0.373 6.373 16 C -0.656 4.656 17 H 0.083 0.917 18 C -0.168 4.168 19 N -0.534 5.534 20 Si 0.893 3.107 21 H -0.205 1.205 22 H -0.211 1.211 23 H -0.210 1.210 24 C -0.053 4.053 25 H 0.089 0.911 26 H 0.085 0.915 27 H 0.091 0.909 28 H 0.138 0.862 29 H 0.137 0.863 30 H 0.137 0.863 31 H 0.140 0.860 32 H 0.100 0.900 33 H 0.096 0.904 34 H 0.107 0.893 35 H 0.109 0.891 36 H 0.089 0.911 37 H 0.106 0.894 38 H 0.224 0.776 39 H 0.080 0.920 40 H 0.105 0.895 41 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 7.865 8.486 8.822 14.550 hybrid contribution 0.728 0.362 1.002 1.290 sum 8.593 8.848 9.823 15.768 Atomic orbital electron populations 1.20910 0.91179 1.03259 1.02522 1.19836 0.96146 0.92596 0.99413 1.21022 0.94273 0.97390 1.01153 1.21097 0.94312 0.97956 1.00823 1.21100 0.99719 0.92552 1.01036 1.21080 0.93606 0.98216 1.00189 1.19836 0.93699 0.94645 0.99778 1.20336 1.00616 0.93388 0.95867 1.21558 1.01090 0.95664 0.98455 1.20246 0.78803 0.86745 0.82474 1.90636 1.58843 1.64149 1.30765 1.50202 1.55195 1.25159 1.06174 1.23278 0.93632 0.88306 0.94774 1.20144 0.80903 0.88512 0.92922 1.86251 1.41340 1.61963 1.47747 1.22235 1.54224 0.97489 0.91649 0.91680 1.25976 0.92130 0.97509 1.01228 1.70951 1.43465 1.04297 1.34667 0.83586 0.76966 0.74928 0.75214 1.20549 1.21117 1.20998 1.24471 1.02541 1.00543 0.77775 0.91050 0.91478 0.90874 0.86197 0.86317 0.86258 0.86049 0.90028 0.90355 0.89256 0.89108 0.91067 0.89417 0.77636 0.92039 0.89533 0.91674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.32 9.22 36.00 0.33 -0.99 16 2 C -0.08 -0.95 5.88 -104.62 -0.62 -1.56 16 3 C -0.12 -1.28 9.70 -39.58 -0.38 -1.66 16 4 C -0.12 -1.24 10.05 -39.59 -0.40 -1.64 16 5 C -0.13 -1.29 10.05 -39.58 -0.40 -1.69 16 6 C -0.11 -1.29 9.68 -39.59 -0.38 -1.68 16 7 C -0.08 -0.99 5.13 -104.63 -0.54 -1.53 16 8 C -0.06 -0.88 3.94 -27.89 -0.11 -0.99 16 9 C -0.13 -1.93 5.24 -27.88 -0.15 -2.08 16 10 C 0.53 10.31 8.06 -10.98 -0.09 10.22 16 11 O -0.56 -12.52 16.71 5.56 0.09 -12.42 16 12 N -0.63 -13.05 3.61 -178.25 -0.64 -13.69 16 13 C 0.12 2.65 8.22 -2.97 -0.02 2.62 16 14 C 0.22 5.05 1.08 -90.83 -0.10 4.95 16 15 O -0.57 -13.80 13.45 -35.23 -0.47 -14.28 16 16 C -0.62 -15.56 8.56 -34.44 -0.29 -15.85 16 17 H 0.06 1.63 7.85 -52.49 -0.41 1.21 16 18 C 0.04 0.94 5.26 -17.82 -0.09 0.85 16 19 N -0.90 -23.34 12.80 55.43 0.71 -22.63 16 20 Si 1.07 22.56 29.93 -169.99 -5.09 17.48 16 21 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 22 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 23 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 24 C 0.07 1.45 7.05 -2.95 -0.02 1.43 16 25 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 26 H 0.07 0.64 8.09 -51.93 -0.42 0.22 16 27 H 0.07 0.88 5.40 -51.93 -0.28 0.60 16 28 H 0.12 1.04 8.06 -52.49 -0.42 0.61 16 29 H 0.12 0.91 8.06 -52.48 -0.42 0.49 16 30 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 31 H 0.12 1.23 8.06 -52.48 -0.42 0.81 16 32 H 0.08 1.17 6.97 -51.93 -0.36 0.81 16 33 H 0.08 1.09 8.01 -51.93 -0.42 0.67 16 34 H 0.09 1.26 8.14 -51.93 -0.42 0.83 16 35 H 0.09 1.33 6.88 -51.93 -0.36 0.97 16 36 H 0.07 1.57 8.14 -51.93 -0.42 1.15 16 37 H 0.09 1.78 8.09 -51.93 -0.42 1.36 16 38 H 0.37 8.91 6.95 45.56 0.32 9.22 16 39 H 0.27 6.75 5.53 -40.82 -0.23 6.53 16 40 H 0.09 1.77 8.09 -51.93 -0.42 1.35 16 41 H 0.06 1.30 7.80 -51.92 -0.41 0.89 16 LS Contribution 341.25 15.07 5.14 5.14 Total: -1.00 -29.23 341.25 -8.68 -37.91 By element: Atomic # 1 Polarization: 17.26 SS G_CDS: -5.16 Total: 12.10 kcal Atomic # 6 Polarization: -6.34 SS G_CDS: -3.26 Total: -9.60 kcal Atomic # 7 Polarization: -36.39 SS G_CDS: 0.07 Total: -36.32 kcal Atomic # 8 Polarization: -26.32 SS G_CDS: -0.38 Total: -26.70 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -5.09 Total: 17.48 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -29.23 -8.68 -37.91 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193985797.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.982 kcal (2) G-P(sol) polarization free energy of solvation -29.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds