Wall clock time and date at job start Tue Mar 31 2020 05:55:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38263 * 120.00273 * 2 1 4 4 C 1.38207 * 119.99884 * 180.23253 * 3 2 1 5 5 C 1.38258 * 120.00568 * 359.80903 * 4 3 2 6 6 C 1.38210 * 119.99249 * 359.97438 * 5 4 3 7 7 C 1.38217 * 120.00155 * 179.79008 * 2 1 3 8 8 C 1.50696 * 119.99603 * 359.97438 * 7 2 1 9 9 C 1.52999 * 109.46955 * 84.73320 * 8 7 2 10 10 C 1.50707 * 109.47017 * 179.97438 * 9 8 7 11 11 O 1.21279 * 119.99658 * 0.02562 * 10 9 8 12 12 N 1.34771 * 120.00011 * 179.97438 * 10 9 8 13 13 C 1.47584 * 134.49657 * 179.97438 * 12 10 9 14 14 C 1.53946 * 86.12025 * 155.36378 * 13 12 10 15 15 O 1.42897 * 113.74068 * 269.15867 * 14 13 12 16 16 C 1.50700 * 113.74246 * 137.95222 * 14 13 12 17 17 H 1.07998 * 119.99659 * 4.91778 * 16 14 13 18 18 C 1.37870 * 120.00275 * 184.91298 * 16 14 13 19 19 N 1.31521 * 119.99939 * 13.83955 * 18 16 14 20 20 Si 1.86793 * 120.00241 * 193.83635 * 18 16 14 21 21 H 1.48503 * 109.47305 * 180.02562 * 20 18 16 22 22 H 1.48502 * 109.47166 * 299.99995 * 20 18 16 23 23 H 1.48499 * 109.46987 * 59.99962 * 20 18 16 24 24 C 1.47585 * 134.49296 * 0.02562 * 12 10 9 25 25 H 1.09003 * 109.47471 * 270.21116 * 1 2 3 26 26 H 1.09007 * 109.46849 * 30.21641 * 1 2 3 27 27 H 1.09004 * 109.47215 * 150.21083 * 1 2 3 28 28 H 1.08001 * 119.99567 * 0.06269 * 3 2 1 29 29 H 1.08007 * 119.99869 * 179.83472 * 4 3 2 30 30 H 1.07991 * 120.00131 * 180.02562 * 5 4 3 31 31 H 1.08006 * 119.99302 * 179.97438 * 6 5 4 32 32 H 1.09002 * 109.47561 * 324.72732 * 8 7 2 33 33 H 1.09004 * 109.47099 * 204.72726 * 8 7 2 34 34 H 1.08992 * 109.47552 * 59.99932 * 9 8 7 35 35 H 1.08994 * 109.47209 * 299.99398 * 9 8 7 36 36 H 1.09003 * 113.76727 * 41.05948 * 13 12 10 37 37 H 1.09000 * 113.86995 * 269.68290 * 13 12 10 38 38 H 0.96698 * 114.00098 * 171.44601 * 15 14 13 39 39 H 0.97007 * 119.99483 * 5.87247 * 19 18 16 40 40 H 1.08994 * 113.77423 * 90.33340 * 24 12 10 41 41 H 1.09010 * 113.76672 * 318.93187 * 24 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1973 -0.0049 5 6 4.2717 -0.0001 -0.0057 6 6 3.5805 -1.1969 -0.0012 7 6 2.1980 -1.1970 0.0044 8 6 1.4445 -2.5020 0.0098 9 6 1.0743 -2.8830 -1.4251 10 6 0.3212 -4.1884 -1.4198 11 8 0.1019 -4.7576 -0.3715 12 7 -0.1093 -4.7227 -2.5797 13 6 -0.8525 -5.9450 -2.9427 14 6 -1.2868 -5.1800 -4.2060 15 8 -2.5103 -4.4586 -4.0496 16 6 -1.2521 -6.0128 -5.4616 17 1 -1.0190 -7.0658 -5.4048 18 6 -1.5180 -5.4305 -6.6826 19 7 -1.5327 -4.1203 -6.7971 20 14 -1.8573 -6.5022 -8.1744 21 1 -2.1115 -5.6395 -9.3562 22 1 -0.6809 -7.3691 -8.4390 23 1 -3.0484 -7.3499 -7.9143 24 6 -0.0260 -4.3210 -3.9974 25 1 -0.3634 0.0038 1.0277 26 1 -0.3633 0.8881 -0.5172 27 1 -0.3634 -0.8919 -0.5106 28 1 1.6583 2.1327 0.0010 29 1 4.1204 2.1326 -0.0076 30 1 5.3516 0.0000 -0.0091 31 1 4.1206 -2.1323 -0.0023 32 1 0.5365 -2.3949 0.6031 33 1 2.0714 -3.2817 0.4424 34 1 1.9823 -2.9902 -2.0184 35 1 0.4474 -2.1034 -1.8578 36 1 -1.6744 -6.1768 -2.2652 37 1 -0.2146 -6.8048 -3.1472 38 1 -2.7201 -3.8745 -4.7912 39 1 -1.2734 -3.5649 -6.0453 40 1 0.8559 -4.7031 -4.5113 41 1 -0.1879 -3.2556 -4.1623 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000193985797.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:29 Heat of formation + Delta-G solvation = -59.874012 kcal Electronic energy + Delta-G solvation = -22589.217926 eV Core-core repulsion = 19240.777112 eV Total energy + Delta-G solvation = -3348.440814 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.46738 -40.51865 -39.29765 -36.14360 -35.22566 -34.33976 -33.37111 -31.41513 -29.86774 -27.91900 -27.26346 -26.90565 -25.04999 -22.88172 -22.09771 -21.34119 -20.23611 -19.64035 -18.16470 -17.31245 -17.21594 -16.94368 -16.66884 -16.31578 -15.88925 -15.61477 -15.54151 -14.87704 -14.72400 -14.31320 -14.15404 -14.00421 -13.79946 -13.69588 -13.40535 -13.32094 -13.06846 -12.97639 -12.70187 -12.62143 -12.38553 -12.29153 -11.90485 -11.78428 -11.74648 -11.17902 -11.15519 -10.72807 -10.23806 -9.71936 -9.65655 -9.47938 -8.67846 -6.48560 0.40918 0.47914 1.52762 1.61382 1.65009 1.83320 1.86724 2.55986 2.82576 2.90784 3.28260 3.52828 3.83455 3.89083 3.95400 3.99863 4.04724 4.13700 4.25211 4.33398 4.37994 4.40559 4.49295 4.55775 4.61718 4.64620 4.73947 4.76873 4.82060 4.89856 4.95482 4.97854 5.01606 5.20222 5.32030 5.59175 5.61778 5.73968 5.75474 6.08662 6.13182 6.45612 6.71564 6.92369 7.03928 7.27355 8.65168 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.023422 B = 0.003410 C = 0.003264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1195.167028 B = 8209.138829 C = 8576.008431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.094 4.094 3 C -0.127 4.127 4 C -0.124 4.124 5 C -0.130 4.130 6 C -0.124 4.124 7 C -0.097 4.097 8 C -0.054 4.054 9 C -0.116 4.116 10 C 0.523 3.477 11 O -0.593 6.593 12 N -0.635 5.635 13 C 0.120 3.880 14 C 0.198 3.802 15 O -0.576 6.576 16 C -0.634 4.634 17 H 0.061 0.939 18 C 0.001 3.999 19 N -0.914 5.914 20 Si 1.109 2.891 21 H -0.284 1.284 22 H -0.270 1.270 23 H -0.278 1.278 24 C 0.086 3.914 25 H 0.076 0.924 26 H 0.079 0.921 27 H 0.056 0.944 28 H 0.139 0.861 29 H 0.145 0.855 30 H 0.142 0.858 31 H 0.129 0.871 32 H 0.069 0.931 33 H 0.072 0.928 34 H 0.104 0.896 35 H 0.098 0.902 36 H 0.060 0.940 37 H 0.100 0.900 38 H 0.374 0.626 39 H 0.265 0.735 40 H 0.091 0.909 41 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.694 10.076 8.844 16.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.094 4.094 3 C -0.145 4.145 4 C -0.142 4.142 5 C -0.148 4.148 6 C -0.142 4.142 7 C -0.097 4.097 8 C -0.092 4.092 9 C -0.155 4.155 10 C 0.315 3.685 11 O -0.475 6.475 12 N -0.369 5.369 13 C -0.003 4.003 14 C 0.158 3.842 15 O -0.384 6.384 16 C -0.672 4.672 17 H 0.079 0.921 18 C -0.201 4.201 19 N -0.551 5.551 20 Si 0.932 3.068 21 H -0.209 1.209 22 H -0.195 1.195 23 H -0.204 1.204 24 C -0.037 4.037 25 H 0.095 0.905 26 H 0.098 0.902 27 H 0.075 0.925 28 H 0.157 0.843 29 H 0.163 0.837 30 H 0.160 0.840 31 H 0.147 0.853 32 H 0.088 0.912 33 H 0.091 0.909 34 H 0.123 0.877 35 H 0.116 0.884 36 H 0.079 0.921 37 H 0.118 0.882 38 H 0.223 0.777 39 H 0.076 0.924 40 H 0.110 0.890 41 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 9.208 9.605 8.571 15.828 hybrid contribution 0.315 0.040 1.146 1.189 sum 9.524 9.646 9.717 16.678 Atomic orbital electron populations 1.20902 0.90967 1.03042 1.02838 1.20014 0.96557 0.92984 0.99842 1.21306 0.94888 0.97647 1.00686 1.21473 0.94268 0.99020 0.99423 1.21420 1.01006 0.92165 1.00208 1.21275 0.93315 0.99306 1.00271 1.19764 0.94221 0.94033 1.01698 1.20189 1.00203 0.94236 0.94560 1.21549 1.01015 0.93043 0.99897 1.21032 0.78290 0.87701 0.81494 1.90617 1.59983 1.65253 1.31638 1.50230 1.55313 1.24796 1.06551 1.23267 0.93858 0.89190 0.93973 1.20341 0.81411 0.89395 0.93084 1.86237 1.42253 1.62083 1.47789 1.22465 1.54536 0.97589 0.92619 0.92098 1.27062 0.91555 0.97936 1.03552 1.71017 1.44511 1.04832 1.34779 0.83009 0.77526 0.73835 0.72468 1.20893 1.19501 1.20424 1.24226 1.01213 1.00533 0.77683 0.90534 0.90172 0.92514 0.84327 0.83748 0.83991 0.85300 0.91189 0.90950 0.87733 0.88411 0.92103 0.88191 0.77680 0.92375 0.89045 0.90858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.52 9.22 71.23 0.66 -1.87 16 2 C -0.09 -2.11 5.88 -19.87 -0.12 -2.22 16 3 C -0.13 -2.41 9.70 22.27 0.22 -2.20 16 4 C -0.12 -2.12 10.05 22.27 0.22 -1.90 16 5 C -0.13 -2.34 10.05 22.27 0.22 -2.12 16 6 C -0.12 -2.64 9.68 22.27 0.22 -2.42 16 7 C -0.10 -2.33 5.13 -19.87 -0.10 -2.43 16 8 C -0.05 -1.47 3.94 29.85 0.12 -1.36 16 9 C -0.12 -3.42 5.24 29.85 0.16 -3.26 16 10 C 0.52 20.35 8.06 87.66 0.71 21.06 16 11 O -0.59 -26.55 16.71 -3.03 -0.05 -26.60 16 12 N -0.64 -25.98 3.61 -840.07 -3.03 -29.01 16 13 C 0.12 5.20 8.22 86.48 0.71 5.91 16 14 C 0.20 9.26 1.08 -10.87 -0.01 9.25 16 15 O -0.58 -28.33 13.45 -148.98 -2.00 -30.34 16 16 C -0.63 -31.75 8.56 25.60 0.22 -31.53 16 17 H 0.06 3.03 7.85 -2.91 -0.02 3.00 16 18 C 0.00 0.04 5.26 84.65 0.45 0.49 16 19 N -0.91 -47.14 12.80 21.45 0.27 -46.86 16 20 Si 1.11 44.69 29.93 68.60 2.05 46.74 16 21 H -0.28 -11.51 7.11 99.48 0.71 -10.80 16 22 H -0.27 -10.14 7.11 99.48 0.71 -9.43 16 23 H -0.28 -10.90 7.11 99.48 0.71 -10.19 16 24 C 0.09 3.53 7.05 86.49 0.61 4.13 16 25 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 26 H 0.08 1.41 8.09 -2.38 -0.02 1.39 16 27 H 0.06 1.35 5.40 -2.38 -0.01 1.34 16 28 H 0.14 2.02 8.06 -2.91 -0.02 1.99 16 29 H 0.14 1.67 8.06 -2.91 -0.02 1.65 16 30 H 0.14 1.84 8.06 -2.92 -0.02 1.81 16 31 H 0.13 2.44 8.06 -2.91 -0.02 2.42 16 32 H 0.07 2.04 6.97 -2.39 -0.02 2.02 16 33 H 0.07 2.02 8.01 -2.39 -0.02 2.00 16 34 H 0.10 2.79 8.14 -2.39 -0.02 2.77 16 35 H 0.10 2.79 6.88 -2.39 -0.02 2.77 16 36 H 0.06 2.73 8.14 -2.39 -0.02 2.71 16 37 H 0.10 4.04 8.09 -2.39 -0.02 4.02 16 38 H 0.37 18.00 6.95 -74.06 -0.52 17.49 16 39 H 0.26 13.32 5.53 -92.70 -0.51 12.81 16 40 H 0.09 3.64 8.09 -2.39 -0.02 3.62 16 41 H 0.07 2.86 7.80 -2.38 -0.02 2.84 16 Total: -1.00 -61.13 341.25 2.29 -58.84 By element: Atomic # 1 Polarization: 36.91 SS G_CDS: 0.78 Total: 37.69 kcal Atomic # 6 Polarization: -14.73 SS G_CDS: 4.27 Total: -10.46 kcal Atomic # 7 Polarization: -73.12 SS G_CDS: -2.76 Total: -75.87 kcal Atomic # 8 Polarization: -54.88 SS G_CDS: -2.06 Total: -56.94 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.05 Total: 46.74 kcal Total: -61.13 2.29 -58.84 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193985797.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.035 kcal (2) G-P(sol) polarization free energy of solvation -61.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds