Wall clock time and date at job start Tue Mar 31 2020 06:19:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21245 * 120.00087 * 2 1 4 4 C 1.47190 * 119.99700 * 179.97438 * 2 1 3 5 5 C 1.39615 * 120.10165 * 5.46453 * 4 2 1 6 6 C 1.39238 * 119.67701 * 180.20623 * 5 4 2 7 7 C 1.47860 * 120.06101 * 179.79644 * 6 5 4 8 8 O 1.21552 * 119.99871 * 22.31048 * 7 6 5 9 9 N 1.34780 * 120.00307 * 202.30678 * 7 6 5 10 10 C 1.46501 * 119.99600 * 4.48566 * 9 7 6 11 11 C 1.46492 * 120.00184 * 184.48297 * 9 7 6 12 12 H 1.09002 * 109.47274 * 0.02562 * 11 9 7 13 13 C 1.53003 * 109.46809 * 119.99932 * 11 9 7 14 14 C 1.50696 * 109.47608 * 240.00278 * 11 9 7 15 15 H 1.08003 * 119.99557 * 359.97438 * 14 11 9 16 16 C 1.37876 * 120.00456 * 180.02562 * 14 11 9 17 17 N 1.31510 * 120.00013 * 359.97438 * 16 14 11 18 18 Si 1.86802 * 120.00127 * 179.97438 * 16 14 11 19 19 H 1.48502 * 109.46903 * 0.02562 * 18 16 14 20 20 H 1.48502 * 109.46928 * 119.99553 * 18 16 14 21 21 H 1.48493 * 109.47201 * 239.99910 * 18 16 14 22 22 C 1.39743 * 119.87616 * 359.51853 * 6 5 4 23 23 C 1.38099 * 120.20488 * 0.25973 * 22 6 5 24 24 C 1.38032 * 120.32385 * 359.97438 * 23 22 6 25 25 C 1.50697 * 119.93971 * 180.02562 * 24 23 22 26 26 H 1.09005 * 109.46947 * 270.00420 * 1 2 3 27 27 H 1.09002 * 109.47282 * 30.00435 * 1 2 3 28 28 H 1.09009 * 109.47299 * 150.00603 * 1 2 3 29 29 H 1.08001 * 120.16482 * 359.97438 * 5 4 2 30 30 H 1.08997 * 109.47095 * 263.95969 * 10 9 7 31 31 H 1.09002 * 109.47009 * 23.96215 * 10 9 7 32 32 H 1.08998 * 109.46692 * 143.95926 * 10 9 7 33 33 H 1.08997 * 109.46709 * 60.00788 * 13 11 9 34 34 H 1.08992 * 109.47390 * 299.99721 * 13 11 9 35 35 H 1.09010 * 109.46674 * 180.02562 * 13 11 9 36 36 H 0.96997 * 119.99901 * 179.97438 * 17 16 14 37 37 H 1.08005 * 119.89260 * 180.27302 * 22 6 5 38 38 H 1.07998 * 119.83498 * 180.02562 * 23 22 6 39 39 H 1.09005 * 109.47385 * 97.08194 * 25 24 23 40 40 H 1.08993 * 109.47476 * 217.08524 * 25 24 23 41 41 H 1.09001 * 109.47084 * 337.08331 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1132 1.0500 0.0000 4 6 2.2429 -1.2747 0.0006 5 6 1.5516 -2.4824 -0.1139 6 6 2.2563 -3.6833 -0.1081 7 6 1.5324 -4.9673 -0.2243 8 8 0.4225 -4.9967 -0.7189 9 7 2.1033 -6.1052 0.2182 10 6 3.3976 -6.0572 0.9028 11 6 1.4295 -7.3900 0.0147 12 1 0.4870 -7.2272 -0.5082 13 6 2.3238 -8.3081 -0.8209 14 6 1.1587 -8.0325 1.3507 15 1 1.4590 -7.5338 2.2604 16 6 0.5287 -9.2573 1.4116 17 7 0.1635 -9.8648 0.3039 18 14 0.1937 -10.0540 3.0677 19 1 0.6982 -9.1733 4.1517 20 1 -1.2683 -10.2546 3.2338 21 1 0.8842 -11.3669 3.1341 22 6 3.6493 -3.6724 0.0020 23 6 4.3284 -2.4748 0.1103 24 6 3.6379 -1.2797 0.1103 25 6 4.3877 0.0222 0.2283 26 1 -0.3633 0.0001 1.0277 27 1 -0.3634 0.8899 -0.5139 28 1 -0.3634 -0.8901 -0.5138 29 1 0.4753 -2.4852 -0.2028 30 1 4.1946 -6.2615 0.1878 31 1 3.5430 -5.0676 1.3360 32 1 3.4182 -6.8068 1.6938 33 1 3.2664 -8.4710 -0.2983 34 1 2.5195 -7.8435 -1.7872 35 1 1.8222 -9.2639 -0.9727 36 1 -0.2794 -10.7267 0.3468 37 1 4.1965 -4.6036 0.0021 38 1 5.4051 -2.4734 0.1946 39 1 4.5390 0.4458 -0.7646 40 1 3.8118 0.7193 0.8369 41 1 5.3549 -0.1569 0.6981 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194035565.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:12 Heat of formation + Delta-G solvation = -25.513642 kcal Electronic energy + Delta-G solvation = -22889.002096 eV Core-core repulsion = 19542.051259 eV Total energy + Delta-G solvation = -3346.950837 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.57025 -39.34582 -37.68510 -35.53126 -33.43588 -32.70574 -31.97946 -29.56597 -29.41897 -27.22987 -26.45838 -25.27228 -23.82351 -22.55116 -21.03169 -20.12369 -18.74754 -17.07318 -16.44399 -16.20360 -15.74761 -15.49599 -15.19179 -15.08095 -14.54470 -14.40471 -13.99237 -13.86472 -13.53062 -13.00017 -12.80633 -12.56891 -12.46858 -12.29158 -12.17479 -12.05421 -11.99895 -11.62815 -11.40052 -11.12788 -10.90950 -10.83583 -10.70154 -10.30378 -10.20713 -9.63129 -9.26784 -9.11450 -9.02754 -8.72407 -8.47663 -7.68634 -6.11815 -4.19914 0.53286 1.04902 2.22374 3.22957 3.24200 3.31658 3.34324 3.73744 3.96218 3.99315 4.35818 4.63871 4.69109 4.89123 4.90337 5.06518 5.19252 5.19975 5.27920 5.33713 5.45360 5.55819 5.63112 5.66018 5.79666 5.82958 5.89426 5.98652 6.12237 6.26788 6.30507 6.41044 6.68485 6.71685 6.78531 6.99399 7.33172 7.39574 7.46864 7.66084 7.95531 8.13468 8.41932 8.76459 8.94160 9.46661 10.93639 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.025197 B = 0.003803 C = 0.003630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1110.962714 B = 7360.225803 C = 7711.361224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.399 3.601 3 O -0.461 6.461 4 C -0.192 4.192 5 C -0.014 4.014 6 C -0.140 4.140 7 C 0.544 3.456 8 O -0.547 6.547 9 N -0.583 5.583 10 C 0.066 3.934 11 C 0.257 3.743 12 H 0.065 0.935 13 C -0.147 4.147 14 C -0.526 4.526 15 H 0.061 0.939 16 C 0.065 3.935 17 N -0.887 5.887 18 Si 0.899 3.101 19 H -0.273 1.273 20 H -0.283 1.283 21 H -0.283 1.283 22 C -0.071 4.071 23 C -0.148 4.148 24 C -0.011 4.011 25 C -0.123 4.123 26 H 0.098 0.902 27 H 0.087 0.913 28 H 0.090 0.910 29 H 0.144 0.856 30 H 0.051 0.949 31 H 0.071 0.929 32 H 0.080 0.920 33 H 0.030 0.970 34 H 0.011 0.989 35 H 0.095 0.905 36 H 0.263 0.737 37 H 0.157 0.843 38 H 0.132 0.868 39 H 0.076 0.924 40 H 0.091 0.909 41 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.914 14.982 0.285 16.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.261 4.261 2 C 0.280 3.720 3 O -0.338 6.338 4 C -0.193 4.193 5 C -0.033 4.033 6 C -0.143 4.143 7 C 0.331 3.669 8 O -0.426 6.426 9 N -0.313 5.313 10 C -0.077 4.077 11 C 0.157 3.843 12 H 0.083 0.917 13 C -0.205 4.205 14 C -0.565 4.565 15 H 0.079 0.921 16 C -0.137 4.137 17 N -0.525 5.525 18 Si 0.726 3.274 19 H -0.198 1.198 20 H -0.209 1.209 21 H -0.209 1.209 22 C -0.089 4.089 23 C -0.166 4.166 24 C -0.012 4.012 25 C -0.179 4.179 26 H 0.117 0.883 27 H 0.106 0.894 28 H 0.109 0.891 29 H 0.161 0.839 30 H 0.069 0.931 31 H 0.089 0.911 32 H 0.099 0.901 33 H 0.049 0.951 34 H 0.031 0.969 35 H 0.113 0.887 36 H 0.073 0.927 37 H 0.174 0.826 38 H 0.150 0.850 39 H 0.095 0.905 40 H 0.109 0.891 41 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 7.544 15.284 -0.032 17.045 hybrid contribution -0.136 -0.798 0.918 1.224 sum 7.408 14.487 0.886 16.295 Atomic orbital electron populations 1.22278 0.93690 1.05175 1.04970 1.22419 0.91653 0.87388 0.70589 1.90467 1.71573 1.34554 1.37229 1.20256 0.93996 0.94711 1.10297 1.21593 1.00713 0.89931 0.91095 1.20200 0.94050 0.94552 1.05513 1.18174 0.85707 0.83421 0.79568 1.90732 1.19303 1.86293 1.46319 1.48144 1.20527 1.08185 1.54430 1.22266 0.85425 1.02516 0.97518 1.19003 0.92427 0.76591 0.96253 0.91712 1.22096 0.99226 1.03131 0.96080 1.21330 1.39184 1.03909 0.92073 0.92128 1.24887 0.95155 0.96885 0.96797 1.69882 1.40064 1.16161 1.26398 0.86434 0.78117 0.79114 0.83695 1.19803 1.20872 1.20912 1.22595 0.93927 0.99849 0.92516 1.21037 1.00194 0.91383 1.03979 1.20362 0.92467 0.96105 0.92223 1.21122 0.99243 0.94257 1.03280 0.88347 0.89419 0.89092 0.83877 0.93080 0.91082 0.90135 0.95082 0.96950 0.88683 0.92681 0.82578 0.85008 0.90548 0.89064 0.92094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.84 9.86 36.01 0.35 -1.48 16 2 C 0.40 4.74 7.17 -30.67 -0.22 4.52 16 3 O -0.46 -6.25 14.06 5.59 0.08 -6.17 16 4 C -0.19 -2.46 5.86 -105.11 -0.62 -3.07 16 5 C -0.01 -0.20 8.93 -38.70 -0.35 -0.55 16 6 C -0.14 -2.24 5.55 -105.03 -0.58 -2.82 16 7 C 0.54 11.20 7.52 -12.32 -0.09 11.11 16 8 O -0.55 -13.26 15.89 5.32 0.08 -13.17 16 9 N -0.58 -12.12 2.75 -176.38 -0.49 -12.60 16 10 C 0.07 1.05 7.72 59.85 0.46 1.51 16 11 C 0.26 6.42 2.63 -69.09 -0.18 6.23 16 12 H 0.07 1.88 6.91 -51.93 -0.36 1.52 16 13 C -0.15 -3.41 8.97 37.16 0.33 -3.08 16 14 C -0.53 -13.91 8.04 -34.44 -0.28 -14.19 16 15 H 0.06 1.58 7.24 -52.48 -0.38 1.20 16 16 C 0.07 1.75 5.30 -17.82 -0.09 1.65 16 17 N -0.89 -24.64 11.32 55.43 0.63 -24.01 16 18 Si 0.90 20.66 29.54 -169.99 -5.02 15.64 16 19 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 20 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 21 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 22 C -0.07 -0.92 7.54 -39.07 -0.29 -1.21 16 23 C -0.15 -1.65 9.64 -39.71 -0.38 -2.04 16 24 C -0.01 -0.13 5.93 -104.06 -0.62 -0.75 16 25 C -0.12 -1.27 8.71 36.00 0.31 -0.95 16 26 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.09 0.79 6.28 -51.92 -0.33 0.46 16 29 H 0.14 1.96 6.00 -52.49 -0.31 1.65 16 30 H 0.05 0.70 7.22 -51.93 -0.38 0.32 16 31 H 0.07 0.96 4.91 -51.93 -0.25 0.70 16 32 H 0.08 1.37 6.96 -51.93 -0.36 1.01 16 33 H 0.03 0.66 7.67 -51.93 -0.40 0.26 16 34 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 35 H 0.09 2.44 6.07 -51.92 -0.32 2.12 16 36 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 37 H 0.16 1.82 4.20 -52.48 -0.22 1.60 16 38 H 0.13 1.10 8.05 -52.49 -0.42 0.68 16 39 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.09 1.04 5.85 -51.93 -0.30 0.74 16 41 H 0.06 0.50 8.03 -51.93 -0.42 0.09 16 LS Contribution 330.51 15.07 4.98 4.98 Total: -1.00 -31.41 330.51 -7.25 -38.66 By element: Atomic # 1 Polarization: 7.08 SS G_CDS: -5.27 Total: 1.80 kcal Atomic # 6 Polarization: -2.88 SS G_CDS: -2.24 Total: -5.12 kcal Atomic # 7 Polarization: -36.76 SS G_CDS: 0.14 Total: -36.61 kcal Atomic # 8 Polarization: -19.51 SS G_CDS: 0.16 Total: -19.34 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -31.41 -7.25 -38.66 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194035565.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.143 kcal (2) G-P(sol) polarization free energy of solvation -31.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.656 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds