Wall clock time and date at job start Tue Mar 31 2020 06:19:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21245 * 120.00087 * 2 1 4 4 C 1.47190 * 119.99700 * 179.97438 * 2 1 3 5 5 C 1.39615 * 120.10165 * 5.46453 * 4 2 1 6 6 C 1.39238 * 119.67701 * 180.20623 * 5 4 2 7 7 C 1.47860 * 120.06101 * 179.79644 * 6 5 4 8 8 O 1.21552 * 119.99871 * 22.31048 * 7 6 5 9 9 N 1.34780 * 120.00307 * 202.30678 * 7 6 5 10 10 C 1.46501 * 119.99600 * 4.48566 * 9 7 6 11 11 C 1.46492 * 120.00184 * 184.48297 * 9 7 6 12 12 H 1.09002 * 109.47274 * 0.02562 * 11 9 7 13 13 C 1.53003 * 109.46809 * 119.99932 * 11 9 7 14 14 C 1.50696 * 109.47608 * 240.00278 * 11 9 7 15 15 H 1.08003 * 119.99557 * 359.97438 * 14 11 9 16 16 C 1.37876 * 120.00456 * 180.02562 * 14 11 9 17 17 N 1.31510 * 120.00013 * 359.97438 * 16 14 11 18 18 Si 1.86802 * 120.00127 * 179.97438 * 16 14 11 19 19 H 1.48502 * 109.46903 * 0.02562 * 18 16 14 20 20 H 1.48502 * 109.46928 * 119.99553 * 18 16 14 21 21 H 1.48493 * 109.47201 * 239.99910 * 18 16 14 22 22 C 1.39743 * 119.87616 * 359.51853 * 6 5 4 23 23 C 1.38099 * 120.20488 * 0.25973 * 22 6 5 24 24 C 1.38032 * 120.32385 * 359.97438 * 23 22 6 25 25 C 1.50697 * 119.93971 * 180.02562 * 24 23 22 26 26 H 1.09005 * 109.46947 * 270.00420 * 1 2 3 27 27 H 1.09002 * 109.47282 * 30.00435 * 1 2 3 28 28 H 1.09009 * 109.47299 * 150.00603 * 1 2 3 29 29 H 1.08001 * 120.16482 * 359.97438 * 5 4 2 30 30 H 1.08997 * 109.47095 * 263.95969 * 10 9 7 31 31 H 1.09002 * 109.47009 * 23.96215 * 10 9 7 32 32 H 1.08998 * 109.46692 * 143.95926 * 10 9 7 33 33 H 1.08997 * 109.46709 * 60.00788 * 13 11 9 34 34 H 1.08992 * 109.47390 * 299.99721 * 13 11 9 35 35 H 1.09010 * 109.46674 * 180.02562 * 13 11 9 36 36 H 0.96997 * 119.99901 * 179.97438 * 17 16 14 37 37 H 1.08005 * 119.89260 * 180.27302 * 22 6 5 38 38 H 1.07998 * 119.83498 * 180.02562 * 23 22 6 39 39 H 1.09005 * 109.47385 * 97.08194 * 25 24 23 40 40 H 1.08993 * 109.47476 * 217.08524 * 25 24 23 41 41 H 1.09001 * 109.47084 * 337.08331 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1132 1.0500 0.0000 4 6 2.2429 -1.2747 0.0006 5 6 1.5516 -2.4824 -0.1139 6 6 2.2563 -3.6833 -0.1081 7 6 1.5324 -4.9673 -0.2243 8 8 0.4225 -4.9967 -0.7189 9 7 2.1033 -6.1052 0.2182 10 6 3.3976 -6.0572 0.9028 11 6 1.4295 -7.3900 0.0147 12 1 0.4870 -7.2272 -0.5082 13 6 2.3238 -8.3081 -0.8209 14 6 1.1587 -8.0325 1.3507 15 1 1.4590 -7.5338 2.2604 16 6 0.5287 -9.2573 1.4116 17 7 0.1635 -9.8648 0.3039 18 14 0.1937 -10.0540 3.0677 19 1 0.6982 -9.1733 4.1517 20 1 -1.2683 -10.2546 3.2338 21 1 0.8842 -11.3669 3.1341 22 6 3.6493 -3.6724 0.0020 23 6 4.3284 -2.4748 0.1103 24 6 3.6379 -1.2797 0.1103 25 6 4.3877 0.0222 0.2283 26 1 -0.3633 0.0001 1.0277 27 1 -0.3634 0.8899 -0.5139 28 1 -0.3634 -0.8901 -0.5138 29 1 0.4753 -2.4852 -0.2028 30 1 4.1946 -6.2615 0.1878 31 1 3.5430 -5.0676 1.3360 32 1 3.4182 -6.8068 1.6938 33 1 3.2664 -8.4710 -0.2983 34 1 2.5195 -7.8435 -1.7872 35 1 1.8222 -9.2639 -0.9727 36 1 -0.2794 -10.7267 0.3468 37 1 4.1965 -4.6036 0.0021 38 1 5.4051 -2.4734 0.1946 39 1 4.5390 0.4458 -0.7646 40 1 3.8118 0.7193 0.8369 41 1 5.3549 -0.1569 0.6981 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194035565.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:12 Heat of formation + Delta-G solvation = -43.685348 kcal Electronic energy + Delta-G solvation = -22889.790080 eV Core-core repulsion = 19542.051259 eV Total energy + Delta-G solvation = -3347.738821 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.71113 -40.63364 -38.85454 -37.26195 -35.09365 -33.84071 -33.19672 -31.18410 -30.41559 -28.29633 -27.80995 -27.30014 -24.91920 -23.87783 -22.29320 -21.35607 -20.17893 -18.57959 -18.12350 -17.60047 -16.85937 -16.78506 -16.55376 -16.17526 -15.98025 -15.84235 -15.07137 -14.99821 -14.61915 -14.42103 -14.30267 -14.05996 -13.58870 -13.42876 -13.24367 -13.07230 -13.03688 -12.98611 -12.84359 -12.68733 -12.65265 -12.44087 -12.23588 -12.11519 -11.93754 -11.19380 -10.82986 -10.53847 -10.46230 -10.03138 -9.83533 -9.35536 -8.15114 -6.31445 -0.46572 -0.03941 1.26096 1.41115 1.43286 1.54113 1.91905 2.24404 2.45861 2.76345 3.05723 3.13493 3.52244 3.70506 3.85592 3.98615 4.12749 4.28480 4.35729 4.50979 4.56409 4.59271 4.62729 4.69511 4.77180 4.81758 4.90107 4.93162 4.99492 5.02728 5.07644 5.09428 5.22603 5.26380 5.47600 5.49339 5.57758 5.66078 5.76947 6.02467 6.15432 6.47443 6.74616 6.76035 7.26032 7.43242 8.89572 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.025197 B = 0.003803 C = 0.003630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1110.962714 B = 7360.225803 C = 7711.361224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.400 3.600 3 O -0.479 6.479 4 C -0.198 4.198 5 C -0.019 4.019 6 C -0.163 4.163 7 C 0.536 3.464 8 O -0.600 6.600 9 N -0.590 5.590 10 C 0.061 3.939 11 C 0.260 3.740 12 H 0.010 0.990 13 C -0.132 4.132 14 C -0.538 4.538 15 H 0.061 0.939 16 C 0.017 3.983 17 N -0.917 5.917 18 Si 0.964 3.036 19 H -0.265 1.265 20 H -0.286 1.286 21 H -0.274 1.274 22 C -0.066 4.066 23 C -0.134 4.134 24 C -0.011 4.011 25 C -0.120 4.120 26 H 0.113 0.887 27 H 0.099 0.901 28 H 0.090 0.910 29 H 0.138 0.862 30 H 0.081 0.919 31 H 0.100 0.900 32 H 0.069 0.931 33 H 0.050 0.950 34 H 0.021 0.979 35 H 0.068 0.932 36 H 0.265 0.735 37 H 0.173 0.827 38 H 0.172 0.828 39 H 0.078 0.922 40 H 0.079 0.921 41 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.469 16.209 1.584 19.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.259 4.259 2 C 0.281 3.719 3 O -0.357 6.357 4 C -0.199 4.199 5 C -0.038 4.038 6 C -0.166 4.166 7 C 0.326 3.674 8 O -0.484 6.484 9 N -0.319 5.319 10 C -0.080 4.080 11 C 0.159 3.841 12 H 0.028 0.972 13 C -0.191 4.191 14 C -0.576 4.576 15 H 0.079 0.921 16 C -0.183 4.183 17 N -0.556 5.556 18 Si 0.790 3.210 19 H -0.189 1.189 20 H -0.212 1.212 21 H -0.199 1.199 22 C -0.084 4.084 23 C -0.152 4.152 24 C -0.012 4.012 25 C -0.176 4.176 26 H 0.131 0.869 27 H 0.118 0.882 28 H 0.109 0.891 29 H 0.156 0.844 30 H 0.100 0.900 31 H 0.118 0.882 32 H 0.088 0.912 33 H 0.069 0.931 34 H 0.040 0.960 35 H 0.087 0.913 36 H 0.074 0.926 37 H 0.190 0.810 38 H 0.189 0.811 39 H 0.097 0.903 40 H 0.098 0.902 41 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 10.142 16.524 1.282 19.431 hybrid contribution -0.911 -1.081 0.482 1.493 sum 9.231 15.443 1.764 18.078 Atomic orbital electron populations 1.22301 0.91777 1.05747 1.06060 1.22677 0.92726 0.86717 0.69770 1.90466 1.72148 1.34877 1.38243 1.20412 0.94821 0.94412 1.10285 1.21577 1.00705 0.90152 0.91359 1.19870 0.95360 0.92283 1.09051 1.18914 0.85311 0.84808 0.78355 1.90688 1.21843 1.87225 1.48614 1.48107 1.22009 1.06891 1.54899 1.22583 0.83681 1.03994 0.97756 1.18602 0.91238 0.78834 0.95466 0.97179 1.21875 0.99277 1.01388 0.96533 1.21579 1.39320 1.04147 0.92593 0.92089 1.25710 0.94910 0.97510 1.00191 1.70021 1.40625 1.16489 1.28422 0.85413 0.77582 0.78442 0.79605 1.18944 1.21239 1.19911 1.22718 0.92375 1.01440 0.91818 1.21405 1.01959 0.89937 1.01860 1.20763 0.92225 0.97447 0.90728 1.21129 1.00098 0.92919 1.03429 0.86899 0.88247 0.89094 0.84438 0.90048 0.88208 0.91196 0.93105 0.95969 0.91319 0.92614 0.81045 0.81064 0.90308 0.90225 0.89362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.45 9.86 71.24 0.70 -2.75 16 2 C 0.40 9.01 7.17 28.04 0.20 9.21 16 3 O -0.48 -12.32 14.06 -2.92 -0.04 -12.36 16 4 C -0.20 -4.80 5.86 -20.18 -0.12 -4.92 16 5 C -0.02 -0.53 8.93 22.84 0.20 -0.33 16 6 C -0.16 -5.09 5.55 -20.13 -0.11 -5.20 16 7 C 0.54 22.69 7.52 86.79 0.65 23.34 16 8 O -0.60 -30.92 15.89 -3.88 -0.06 -30.98 16 9 N -0.59 -24.72 2.75 -830.21 -2.29 -27.01 16 10 C 0.06 1.82 7.72 127.77 0.99 2.81 16 11 C 0.26 13.43 2.63 44.25 0.12 13.54 16 12 H 0.01 0.63 6.91 -2.39 -0.02 0.62 16 13 C -0.13 -6.23 8.97 71.98 0.65 -5.58 16 14 C -0.54 -28.91 8.04 25.60 0.21 -28.71 16 15 H 0.06 3.19 7.24 -2.91 -0.02 3.17 16 16 C 0.02 0.89 5.30 84.65 0.45 1.34 16 17 N -0.92 -52.29 11.32 21.45 0.24 -52.04 16 18 Si 0.96 42.55 29.54 68.60 2.03 44.57 16 19 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 20 H -0.29 -12.72 7.11 99.48 0.71 -12.01 16 21 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 22 C -0.07 -1.51 7.54 22.60 0.17 -1.34 16 23 C -0.13 -2.43 9.64 22.19 0.21 -2.22 16 24 C -0.01 -0.23 5.93 -19.50 -0.12 -0.35 16 25 C -0.12 -2.07 8.71 71.23 0.62 -1.45 16 26 H 0.11 1.61 8.14 -2.38 -0.02 1.59 16 27 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 28 H 0.09 1.57 6.28 -2.38 -0.01 1.55 16 29 H 0.14 3.94 6.00 -2.91 -0.02 3.92 16 30 H 0.08 1.94 7.22 -2.39 -0.02 1.93 16 31 H 0.10 2.40 4.91 -2.39 -0.01 2.39 16 32 H 0.07 2.25 6.96 -2.39 -0.02 2.24 16 33 H 0.05 2.13 7.67 -2.39 -0.02 2.11 16 34 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 35 H 0.07 3.62 6.07 -2.38 -0.01 3.60 16 36 H 0.26 14.26 8.31 -92.71 -0.77 13.49 16 37 H 0.17 3.35 4.20 -2.91 -0.01 3.34 16 38 H 0.17 1.80 8.05 -2.91 -0.02 1.78 16 39 H 0.08 1.37 8.14 -2.38 -0.02 1.35 16 40 H 0.08 1.62 5.85 -2.39 -0.01 1.61 16 41 H 0.09 1.05 8.03 -2.39 -0.02 1.03 16 Total: -1.00 -71.54 330.51 5.76 -65.78 By element: Atomic # 1 Polarization: 13.59 SS G_CDS: 1.06 Total: 14.65 kcal Atomic # 6 Polarization: -7.42 SS G_CDS: 4.82 Total: -2.60 kcal Atomic # 7 Polarization: -77.01 SS G_CDS: -2.04 Total: -79.05 kcal Atomic # 8 Polarization: -43.24 SS G_CDS: -0.10 Total: -43.34 kcal Atomic # 14 Polarization: 42.55 SS G_CDS: 2.03 Total: 44.57 kcal Total: -71.54 5.76 -65.78 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194035565.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.091 kcal (2) G-P(sol) polarization free energy of solvation -71.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.777 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds