Wall clock time and date at job start Tue Mar 31 2020 06:19:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 O 1.21256 * 119.99617 * 2 1 4 4 C 1.47180 * 120.00173 * 179.97438 * 2 1 3 5 5 C 1.39624 * 120.10169 * 353.96404 * 4 2 1 6 6 C 1.39228 * 119.67976 * 180.02562 * 5 4 2 7 7 C 1.47864 * 120.05977 * 180.02562 * 6 5 4 8 8 O 1.21547 * 119.99938 * 359.97438 * 7 6 5 9 9 N 1.34779 * 119.99527 * 179.97438 * 7 6 5 10 10 C 1.46508 * 119.99406 * 179.97438 * 9 7 6 11 11 C 1.52997 * 109.46755 * 180.02562 * 10 9 7 12 12 C 1.53001 * 109.47072 * 180.02562 * 11 10 9 13 13 C 1.50695 * 109.47152 * 179.97438 * 12 11 10 14 14 H 1.07994 * 120.00256 * 0.02562 * 13 12 11 15 15 C 1.37880 * 119.99944 * 179.97438 * 13 12 11 16 16 N 1.31518 * 120.00014 * 180.02562 * 15 13 12 17 17 Si 1.86799 * 119.99774 * 0.02562 * 15 13 12 18 18 H 1.48500 * 109.47407 * 89.99723 * 17 15 13 19 19 H 1.48506 * 109.47044 * 209.99429 * 17 15 13 20 20 H 1.48493 * 109.47529 * 329.99386 * 17 15 13 21 21 C 1.39749 * 119.87647 * 359.97438 * 6 5 4 22 22 C 1.38097 * 120.20476 * 0.25355 * 21 6 5 23 23 C 1.38026 * 120.32283 * 359.48943 * 22 21 6 24 24 C 1.50699 * 119.94024 * 180.23175 * 23 22 21 25 25 H 1.09003 * 109.46445 * 240.00230 * 1 2 3 26 26 H 1.08997 * 109.46817 * 359.97438 * 1 2 3 27 27 H 1.09000 * 109.46723 * 120.00607 * 1 2 3 28 28 H 1.07997 * 120.15575 * 0.04130 * 5 4 2 29 29 H 0.96992 * 120.00405 * 0.02562 * 9 7 6 30 30 H 1.08993 * 109.47222 * 300.00386 * 10 9 7 31 31 H 1.09000 * 109.46625 * 60.00426 * 10 9 7 32 32 H 1.09002 * 109.47361 * 299.99846 * 11 10 9 33 33 H 1.09006 * 109.47298 * 60.00238 * 11 10 9 34 34 H 1.08997 * 109.47458 * 300.00499 * 12 11 10 35 35 H 1.09006 * 109.46900 * 59.99951 * 12 11 10 36 36 H 0.97000 * 120.00020 * 180.02562 * 16 15 13 37 37 H 1.08008 * 119.89470 * 179.97438 * 21 6 5 38 38 H 1.07997 * 119.83849 * 179.74846 * 22 21 6 39 39 H 1.09002 * 109.47582 * 263.59189 * 24 23 22 40 40 H 1.09005 * 109.47299 * 23.59775 * 24 23 22 41 41 H 1.09007 * 109.47407 * 143.59337 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1133 1.0501 0.0000 4 6 2.2430 -1.2746 0.0006 5 6 1.5529 -2.4816 0.1281 6 6 2.2579 -3.6822 0.1281 7 6 1.5355 -4.9654 0.2621 8 8 0.3251 -4.9727 0.3729 9 7 2.2193 -6.1268 0.2614 10 6 1.5035 -7.3982 0.3948 11 6 2.5062 -8.5534 0.3652 12 6 1.7587 -9.8812 0.5038 13 6 2.7463 -11.0191 0.4741 14 1 3.8015 -10.8156 0.3674 15 6 2.3027 -12.3199 0.5840 16 7 3.1646 -13.3130 0.5586 17 14 0.4775 -12.6718 0.7692 18 1 -0.1332 -12.8394 -0.5740 19 1 0.2908 -13.9170 1.5567 20 1 -0.1763 -11.5389 1.4722 21 6 3.6495 -3.6723 0.0002 22 6 4.3275 -2.4753 -0.1210 23 6 3.6365 -1.2805 -0.1273 24 6 4.3847 0.0203 -0.2652 25 1 -0.3632 -0.5138 0.8901 26 1 -0.3633 1.0277 0.0005 27 1 -0.3633 -0.5139 -0.8900 28 1 0.4774 -2.4839 0.2261 29 1 3.1852 -6.1210 0.1734 30 1 0.9611 -7.4124 1.3401 31 1 0.7991 -7.5067 -0.4300 32 1 3.0489 -8.5394 -0.5800 33 1 3.2103 -8.4446 1.1902 34 1 1.2156 -9.8955 1.4487 35 1 1.0548 -9.9897 -0.3214 36 1 2.8525 -14.2282 0.6356 37 1 4.1968 -4.6034 0.0005 38 1 5.4034 -2.4744 -0.2154 39 1 4.5548 0.4483 0.7228 40 1 5.3427 -0.1614 -0.7523 41 1 3.7977 0.7152 -0.8659 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194038844.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:07 Heat of formation + Delta-G solvation = -86.429075 kcal Electronic energy + Delta-G solvation = -21501.996509 eV Core-core repulsion = 18152.404181 eV Total energy + Delta-G solvation = -3349.592328 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.61111 -40.60878 -38.90465 -37.03167 -35.21976 -34.05218 -33.46745 -32.80416 -30.39665 -29.37775 -27.99974 -25.18912 -24.49537 -23.24367 -22.25559 -21.82963 -20.53062 -19.08712 -18.62736 -17.43662 -16.82619 -16.75582 -16.60362 -16.39328 -16.19714 -15.98867 -15.46145 -15.10165 -15.00493 -14.77726 -14.62169 -14.39350 -13.82310 -13.68461 -13.32284 -13.12454 -12.97645 -12.90972 -12.86102 -12.71149 -12.66292 -12.48897 -11.93196 -11.78229 -11.58846 -11.32426 -11.08017 -10.75292 -10.53874 -10.23576 -10.13027 -9.81579 -8.28552 -6.32321 -0.51983 -0.11403 1.21865 1.37823 1.39648 1.51106 1.84627 2.09025 2.37154 2.74412 3.02942 3.07420 3.53804 3.66308 3.86788 3.95228 4.08653 4.12117 4.21266 4.23901 4.48228 4.50654 4.57006 4.60145 4.66872 4.77178 4.87108 4.89370 4.89635 5.04303 5.06048 5.09155 5.17056 5.20575 5.34390 5.46376 5.49716 5.56932 5.66003 5.70265 6.28240 6.47110 6.48863 6.76085 7.13088 7.32589 8.87767 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.035622 B = 0.002511 C = 0.002353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 785.842899 B =11146.553584 C =11894.561879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.396 3.604 3 O -0.481 6.481 4 C -0.198 4.198 5 C -0.011 4.011 6 C -0.167 4.167 7 C 0.555 3.445 8 O -0.580 6.580 9 N -0.711 5.711 10 C 0.126 3.874 11 C -0.101 4.101 12 C -0.013 4.013 13 C -0.530 4.530 14 H 0.038 0.962 15 C 0.004 3.996 16 N -0.951 5.951 17 Si 0.947 3.053 18 H -0.268 1.268 19 H -0.286 1.286 20 H -0.247 1.247 21 C -0.044 4.044 22 C -0.137 4.137 23 C -0.010 4.010 24 C -0.123 4.123 25 H 0.107 0.893 26 H 0.091 0.909 27 H 0.107 0.893 28 H 0.148 0.852 29 H 0.414 0.586 30 H 0.060 0.940 31 H 0.061 0.939 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.021 0.979 35 H 0.020 0.980 36 H 0.266 0.734 37 H 0.156 0.844 38 H 0.165 0.835 39 H 0.079 0.921 40 H 0.084 0.916 41 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.525 28.145 -1.840 28.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.257 4.257 2 C 0.277 3.723 3 O -0.359 6.359 4 C -0.199 4.199 5 C -0.030 4.030 6 C -0.170 4.170 7 C 0.343 3.657 8 O -0.461 6.461 9 N -0.363 5.363 10 C 0.002 3.998 11 C -0.139 4.139 12 C -0.051 4.051 13 C -0.568 4.568 14 H 0.057 0.943 15 C -0.193 4.193 16 N -0.591 5.591 17 Si 0.771 3.229 18 H -0.193 1.193 19 H -0.212 1.212 20 H -0.170 1.170 21 C -0.062 4.062 22 C -0.155 4.155 23 C -0.010 4.010 24 C -0.179 4.179 25 H 0.125 0.875 26 H 0.109 0.891 27 H 0.126 0.874 28 H 0.166 0.834 29 H 0.251 0.749 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.039 0.961 35 H 0.038 0.962 36 H 0.074 0.926 37 H 0.174 0.826 38 H 0.183 0.817 39 H 0.097 0.903 40 H 0.103 0.897 41 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -1.050 28.471 -1.751 28.545 hybrid contribution -0.157 -1.043 0.076 1.058 sum -1.207 27.428 -1.674 27.506 Atomic orbital electron populations 1.22308 0.91379 1.05963 1.06040 1.22791 0.92919 0.86743 0.69809 1.90491 1.72320 1.35093 1.38031 1.20440 0.94574 0.94814 1.10064 1.21598 1.01069 0.89831 0.90480 1.19823 0.94849 0.92585 1.09769 1.18567 0.86748 0.84473 0.75873 1.90746 1.15365 1.88081 1.51903 1.45898 1.11751 1.05350 1.73267 1.21363 0.95113 0.81738 1.01537 1.21494 0.97573 0.92558 1.02289 1.19471 0.95800 0.92948 0.96863 1.21469 0.94400 0.91396 1.49500 0.94346 1.25991 1.02769 0.96167 0.94393 1.70059 1.36685 0.99854 1.52549 0.85703 0.79938 0.78214 0.79084 1.19288 1.21191 1.17008 1.21868 0.92209 1.00244 0.91912 1.21343 1.01943 0.90363 1.01825 1.20749 0.92529 0.97231 0.90503 1.21145 1.00134 0.93245 1.03399 0.87459 0.89057 0.87412 0.83446 0.74859 0.92123 0.92014 0.91539 0.91573 0.96054 0.96153 0.92551 0.82612 0.81748 0.90290 0.89676 0.90239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.20 9.01 71.24 0.64 -1.55 16 2 C 0.40 6.75 7.16 28.04 0.20 6.95 16 3 O -0.48 -10.41 14.06 -2.95 -0.04 -10.45 16 4 C -0.20 -3.47 5.86 -20.18 -0.12 -3.59 16 5 C -0.01 -0.20 9.01 22.84 0.21 0.00 16 6 C -0.17 -3.35 5.87 -20.13 -0.12 -3.47 16 7 C 0.55 14.54 7.77 86.79 0.67 15.21 16 8 O -0.58 -19.48 16.34 -3.86 -0.06 -19.54 16 9 N -0.71 -17.13 5.51 -465.95 -2.57 -19.69 16 10 C 0.13 3.76 5.67 86.38 0.49 4.25 16 11 C -0.10 -3.46 5.27 30.59 0.16 -3.30 16 12 C -0.01 -0.57 4.04 29.85 0.12 -0.45 16 13 C -0.53 -29.44 9.66 25.60 0.25 -29.20 16 14 H 0.04 2.32 7.99 -2.91 -0.02 2.30 16 15 C 0.00 0.21 5.47 84.65 0.46 0.67 16 16 N -0.95 -58.77 13.96 21.45 0.30 -58.48 16 17 Si 0.95 43.70 27.47 68.60 1.88 45.58 16 18 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 19 H -0.29 -13.04 7.11 99.48 0.71 -12.33 16 20 H -0.25 -10.58 6.54 99.48 0.65 -9.93 16 21 C -0.04 -0.63 9.54 22.60 0.22 -0.42 16 22 C -0.14 -1.75 9.64 22.19 0.21 -1.54 16 23 C -0.01 -0.15 5.93 -19.50 -0.12 -0.27 16 24 C -0.12 -1.72 8.72 71.24 0.62 -1.09 16 25 H 0.11 0.95 7.90 -2.39 -0.02 0.94 16 26 H 0.09 0.92 8.12 -2.39 -0.02 0.90 16 27 H 0.11 0.93 8.14 -2.39 -0.02 0.91 16 28 H 0.15 2.62 6.57 -2.91 -0.02 2.61 16 29 H 0.41 7.39 6.49 -92.71 -0.60 6.78 16 30 H 0.06 1.90 8.14 -2.39 -0.02 1.89 16 31 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 32 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 33 H 0.07 2.19 8.14 -2.38 -0.02 2.18 16 34 H 0.02 0.93 7.20 -2.39 -0.02 0.92 16 35 H 0.02 0.88 7.57 -2.38 -0.02 0.86 16 36 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 37 H 0.16 1.49 6.39 -2.91 -0.02 1.47 16 38 H 0.17 1.15 8.05 -2.91 -0.02 1.13 16 39 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 40 H 0.08 0.80 8.04 -2.38 -0.02 0.78 16 41 H 0.08 1.36 5.85 -2.38 -0.01 1.35 16 Total: -1.00 -72.86 344.03 3.80 -69.06 By element: Atomic # 1 Polarization: 10.92 SS G_CDS: 0.38 Total: 11.31 kcal Atomic # 6 Polarization: -21.69 SS G_CDS: 3.90 Total: -17.79 kcal Atomic # 7 Polarization: -75.90 SS G_CDS: -2.27 Total: -78.17 kcal Atomic # 8 Polarization: -29.89 SS G_CDS: -0.10 Total: -29.99 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 1.88 Total: 45.58 kcal Total: -72.86 3.80 -69.06 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194038844.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.373 kcal (2) G-P(sol) polarization free energy of solvation -72.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds