Wall clock time and date at job start Tue Mar 31 2020 07:07:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53049 * 109.46034 * 2 1 4 4 C 1.53190 * 109.31246 * 178.62399 * 3 2 1 5 5 N 1.46932 * 108.77381 * 54.63625 * 4 3 2 6 6 C 1.34770 * 120.63108 * 126.36975 * 5 4 3 7 7 O 1.21587 * 120.00139 * 354.15714 * 6 5 4 8 8 C 1.47539 * 119.99905 * 174.16068 * 6 5 4 9 9 C 1.39666 * 120.19515 * 306.23605 * 8 6 5 10 10 C 1.37831 * 119.91370 * 180.02562 * 9 8 6 11 11 C 1.38574 * 120.32746 * 0.02562 * 10 9 8 12 12 C 1.38027 * 120.39926 * 359.68507 * 11 10 9 13 13 C 1.38836 * 120.06965 * 0.59086 * 12 11 10 14 14 O 1.35519 * 120.15818 * 179.69983 * 13 12 11 15 15 C 1.34818 * 117.00200 * 5.44820 * 14 13 12 16 16 H 1.07999 * 119.99945 * 354.94910 * 15 14 13 17 17 C 1.38693 * 120.00316 * 174.67611 * 15 14 13 18 18 N 1.31518 * 120.00169 * 180.27289 * 17 15 14 19 19 Si 1.86801 * 119.99933 * 0.27198 * 17 15 14 20 20 H 1.48503 * 109.46924 * 89.99857 * 19 17 15 21 21 H 1.48492 * 109.47326 * 210.00062 * 19 17 15 22 22 H 1.48496 * 109.47090 * 330.00287 * 19 17 15 23 23 C 1.46932 * 118.73613 * 306.63972 * 5 4 3 24 24 C 1.52756 * 109.00676 * 53.31131 * 23 5 4 25 25 H 1.09004 * 109.46705 * 60.00448 * 1 2 3 26 26 H 1.08996 * 109.47013 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47650 * 300.00741 * 1 2 3 28 28 H 1.08998 * 109.45752 * 119.96860 * 2 1 3 29 29 H 1.08996 * 109.49629 * 58.66851 * 3 2 1 30 30 H 1.09004 * 109.51649 * 298.59248 * 3 2 1 31 31 H 1.08995 * 109.58950 * 294.84856 * 4 3 2 32 32 H 1.08997 * 109.70378 * 174.48742 * 4 3 2 33 33 H 1.07991 * 120.04307 * 0.04734 * 9 8 6 34 34 H 1.08003 * 119.83487 * 180.02562 * 10 9 8 35 35 H 1.08002 * 119.79887 * 179.97438 * 11 10 9 36 36 H 1.08000 * 119.96432 * 180.30117 * 12 11 10 37 37 H 0.96998 * 119.99865 * 179.97438 * 18 17 15 38 38 H 1.08997 * 109.58273 * 173.14838 * 23 5 4 39 39 H 1.08999 * 109.58420 * 293.57099 * 23 5 4 40 40 H 1.09006 * 109.56342 * 185.55063 * 24 23 5 41 41 H 1.09000 * 109.36056 * 65.50246 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4431 0.0000 4 6 3.5714 1.4392 0.0347 5 7 4.0677 0.6239 -1.0823 6 6 4.9611 1.1278 -1.9565 7 8 5.2838 2.2982 -1.8893 8 6 5.5474 0.2594 -2.9952 9 6 6.1694 -0.9395 -2.6395 10 6 6.7157 -1.7460 -3.6145 11 6 6.6517 -1.3734 -4.9477 12 6 6.0350 -0.1944 -5.3146 13 6 5.4843 0.6334 -4.3456 14 8 4.8837 1.7944 -4.7033 15 6 4.7535 2.0348 -6.0234 16 1 5.1921 1.3577 -6.7414 17 6 4.0515 3.1486 -6.4596 18 7 3.9199 3.3802 -7.7475 19 14 3.2928 4.3198 -5.2178 20 1 4.2737 5.3806 -4.8745 21 1 2.0765 4.9403 -5.8014 22 1 2.9253 3.5695 -3.9901 23 6 3.5669 -0.7494 -1.2316 24 6 2.0397 -0.7229 -1.2489 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 1.8931 -0.5134 0.8903 29 1 1.6573 1.9640 0.8776 30 1 1.6976 1.9502 -0.9021 31 1 3.9145 1.0143 0.9780 32 1 3.9437 2.4589 -0.0636 33 1 6.2218 -1.2343 -1.6019 34 1 7.1959 -2.6731 -3.3381 35 1 7.0830 -2.0118 -5.7047 36 1 5.9849 0.0868 -6.3561 37 1 3.4286 4.1590 -8.0525 38 1 3.9343 -1.1726 -2.1665 39 1 3.9096 -1.3564 -0.3937 40 1 1.6570 -1.7435 -1.2601 41 1 1.6974 -0.1958 -2.1395 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194043622.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:07:33 Heat of formation + Delta-G solvation = -44.067896 kcal Electronic energy + Delta-G solvation = -23696.100928 eV Core-core repulsion = 20348.345519 eV Total energy + Delta-G solvation = -3347.755409 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.18830 -38.88076 -37.22150 -36.55252 -33.72042 -32.48204 -31.48395 -30.26686 -29.26494 -28.10285 -25.37614 -24.04430 -23.25170 -22.29254 -21.38758 -20.42116 -19.06563 -17.97605 -17.41035 -16.54945 -15.74249 -15.16341 -14.78787 -14.61326 -14.46970 -14.23607 -13.93854 -13.83797 -13.77694 -13.42878 -13.02411 -12.78572 -12.62883 -12.35031 -12.24557 -11.88450 -11.81029 -11.46556 -11.30426 -11.12894 -10.96599 -10.80665 -10.79285 -10.43370 -10.38452 -10.22554 -9.63650 -9.18684 -8.93109 -8.38520 -8.29525 -7.50956 -6.49371 -4.15495 1.69594 2.15585 3.20378 3.24135 3.30806 3.43533 3.48705 4.24802 4.37220 4.67915 4.70148 4.71745 4.79147 5.03978 5.07376 5.19597 5.31416 5.39418 5.43650 5.49449 5.59128 5.59760 5.66633 5.76051 5.83979 5.86162 5.88293 5.99117 6.06902 6.11879 6.12376 6.13421 6.36519 6.41944 6.53268 6.81950 6.88337 7.00278 7.14421 7.46199 7.65097 7.79523 7.93062 8.72061 8.85678 9.46843 10.56727 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.012330 B = 0.007123 C = 0.005277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2270.310459 B = 3930.201541 C = 5305.089512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.091 4.091 3 C -0.131 4.131 4 C 0.113 3.887 5 N -0.615 5.615 6 C 0.579 3.421 7 O -0.531 6.531 8 C -0.214 4.214 9 C -0.044 4.044 10 C -0.214 4.214 11 C -0.056 4.056 12 C -0.222 4.222 13 C 0.196 3.804 14 O -0.191 6.191 15 C -0.393 4.393 16 H 0.110 0.890 17 C 0.071 3.929 18 N -0.871 5.871 19 Si 0.903 3.097 20 H -0.270 1.270 21 H -0.283 1.283 22 H -0.257 1.257 23 C 0.109 3.891 24 C -0.133 4.133 25 H 0.055 0.945 26 H 0.054 0.946 27 H 0.053 0.947 28 H 0.069 0.931 29 H 0.071 0.929 30 H 0.068 0.932 31 H 0.061 0.939 32 H 0.090 0.910 33 H 0.116 0.884 34 H 0.113 0.887 35 H 0.114 0.886 36 H 0.138 0.862 37 H 0.281 0.719 38 H 0.095 0.905 39 H 0.062 0.938 40 H 0.073 0.927 41 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.481 -10.433 14.028 17.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.109 4.109 3 C -0.169 4.169 4 C -0.009 4.009 5 N -0.350 5.350 6 C 0.369 3.631 7 O -0.406 6.406 8 C -0.219 4.219 9 C -0.063 4.063 10 C -0.233 4.233 11 C -0.075 4.075 12 C -0.241 4.241 13 C 0.141 3.859 14 O -0.093 6.093 15 C -0.468 4.468 16 H 0.127 0.873 17 C -0.134 4.134 18 N -0.507 5.507 19 Si 0.728 3.272 20 H -0.196 1.196 21 H -0.209 1.209 22 H -0.180 1.180 23 C -0.014 4.014 24 C -0.171 4.171 25 H 0.074 0.926 26 H 0.073 0.927 27 H 0.072 0.928 28 H 0.088 0.912 29 H 0.089 0.911 30 H 0.087 0.913 31 H 0.080 0.920 32 H 0.109 0.891 33 H 0.134 0.866 34 H 0.131 0.869 35 H 0.132 0.868 36 H 0.156 0.844 37 H 0.092 0.908 38 H 0.113 0.887 39 H 0.080 0.920 40 H 0.092 0.908 41 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -3.501 -9.415 13.995 17.227 hybrid contribution -0.341 0.449 0.185 0.593 sum -3.842 -8.966 14.180 17.211 Atomic orbital electron populations 1.21826 0.95202 1.01549 1.01792 1.21108 0.95556 0.96021 0.98230 1.21992 0.95524 0.96724 1.02680 1.21490 0.93574 0.97370 0.88512 1.47992 1.43870 1.14442 1.28740 1.18250 0.78023 0.86844 0.79981 1.90742 1.61349 1.16895 1.71651 1.18743 1.13098 0.98891 0.91169 1.20706 0.95477 0.91505 0.98612 1.20556 1.08309 1.01461 0.92989 1.20952 0.95582 0.95173 0.95763 1.21260 1.05528 0.96823 1.00523 1.18952 0.90558 0.85181 0.91260 1.83624 1.66632 1.31292 1.27773 1.20837 1.35804 1.11857 0.78313 0.87321 1.24454 0.95665 0.97020 0.96287 1.69625 1.39706 1.28440 1.12948 0.86185 0.78690 0.80858 0.81424 1.19570 1.20870 1.18043 1.21677 0.93897 0.82936 1.02921 1.21938 0.95578 1.00901 0.98673 0.92598 0.92736 0.92838 0.91238 0.91080 0.91315 0.92049 0.89132 0.86567 0.86901 0.86796 0.84399 0.90842 0.88723 0.91995 0.90849 0.91179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 9.19 37.16 0.34 -1.03 16 2 C -0.09 -0.95 2.68 -90.58 -0.24 -1.20 16 3 C -0.13 -1.61 5.36 -26.61 -0.14 -1.75 16 4 C 0.11 1.60 6.45 -3.71 -0.02 1.58 16 5 N -0.62 -10.15 2.98 -174.26 -0.52 -10.67 16 6 C 0.58 12.24 6.83 -12.47 -0.09 12.15 16 7 O -0.53 -13.34 16.16 1.73 0.03 -13.31 16 8 C -0.21 -4.42 4.61 -104.81 -0.48 -4.90 16 9 C -0.04 -0.73 7.79 -39.20 -0.31 -1.03 16 10 C -0.21 -3.31 10.02 -39.61 -0.40 -3.71 16 11 C -0.06 -0.95 10.03 -39.53 -0.40 -1.35 16 12 C -0.22 -4.66 9.16 -39.44 -0.36 -5.02 16 13 C 0.20 4.63 6.64 -38.60 -0.26 4.37 16 14 O -0.19 -5.25 7.78 -2.77 -0.02 -5.27 16 15 C -0.39 -11.19 9.95 30.90 0.31 -10.88 16 16 H 0.11 3.08 5.44 -52.49 -0.29 2.80 16 17 C 0.07 2.02 5.49 -17.52 -0.10 1.92 16 18 N -0.87 -25.17 13.96 55.48 0.77 -24.39 16 19 Si 0.90 23.05 28.62 -169.99 -4.86 18.19 16 20 H -0.27 -6.94 7.11 56.52 0.40 -6.54 16 21 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 22 H -0.26 -6.81 7.11 56.52 0.40 -6.40 16 23 C 0.11 1.42 5.54 -3.93 -0.02 1.40 16 24 C -0.13 -1.56 5.34 -26.84 -0.14 -1.71 16 25 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 32 H 0.09 1.48 6.99 -51.93 -0.36 1.11 16 33 H 0.12 1.58 7.76 -52.49 -0.41 1.18 16 34 H 0.11 1.39 8.06 -52.48 -0.42 0.97 16 35 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 36 H 0.14 3.01 5.64 -52.49 -0.30 2.71 16 37 H 0.28 7.53 8.31 -40.82 -0.34 7.19 16 38 H 0.09 1.34 5.40 -51.93 -0.28 1.06 16 39 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 41 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 332.98 15.07 5.02 5.02 Total: -1.00 -32.32 332.98 -7.73 -40.06 By element: Atomic # 1 Polarization: 7.37 SS G_CDS: -5.84 Total: 1.53 kcal Atomic # 6 Polarization: -8.84 SS G_CDS: -2.31 Total: -11.15 kcal Atomic # 7 Polarization: -35.31 SS G_CDS: 0.26 Total: -35.06 kcal Atomic # 8 Polarization: -18.59 SS G_CDS: 0.01 Total: -18.58 kcal Atomic # 14 Polarization: 23.05 SS G_CDS: -4.86 Total: 18.19 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -32.32 -7.73 -40.06 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194043622.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.013 kcal (2) G-P(sol) polarization free energy of solvation -32.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds