Wall clock time and date at job start Tue Mar 31 2020 07:07:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53049 * 109.46034 * 2 1 4 4 C 1.53190 * 109.31246 * 178.62399 * 3 2 1 5 5 N 1.46932 * 108.77381 * 54.63625 * 4 3 2 6 6 C 1.34770 * 120.63108 * 126.36975 * 5 4 3 7 7 O 1.21587 * 120.00139 * 354.15714 * 6 5 4 8 8 C 1.47539 * 119.99905 * 174.16068 * 6 5 4 9 9 C 1.39666 * 120.19515 * 306.23605 * 8 6 5 10 10 C 1.37831 * 119.91370 * 180.02562 * 9 8 6 11 11 C 1.38574 * 120.32746 * 0.02562 * 10 9 8 12 12 C 1.38027 * 120.39926 * 359.68507 * 11 10 9 13 13 C 1.38836 * 120.06965 * 0.59086 * 12 11 10 14 14 O 1.35519 * 120.15818 * 179.69983 * 13 12 11 15 15 C 1.34818 * 117.00200 * 5.44820 * 14 13 12 16 16 H 1.07999 * 119.99945 * 354.94910 * 15 14 13 17 17 C 1.38693 * 120.00316 * 174.67611 * 15 14 13 18 18 N 1.31518 * 120.00169 * 180.27289 * 17 15 14 19 19 Si 1.86801 * 119.99933 * 0.27198 * 17 15 14 20 20 H 1.48503 * 109.46924 * 89.99857 * 19 17 15 21 21 H 1.48492 * 109.47326 * 210.00062 * 19 17 15 22 22 H 1.48496 * 109.47090 * 330.00287 * 19 17 15 23 23 C 1.46932 * 118.73613 * 306.63972 * 5 4 3 24 24 C 1.52756 * 109.00676 * 53.31131 * 23 5 4 25 25 H 1.09004 * 109.46705 * 60.00448 * 1 2 3 26 26 H 1.08996 * 109.47013 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47650 * 300.00741 * 1 2 3 28 28 H 1.08998 * 109.45752 * 119.96860 * 2 1 3 29 29 H 1.08996 * 109.49629 * 58.66851 * 3 2 1 30 30 H 1.09004 * 109.51649 * 298.59248 * 3 2 1 31 31 H 1.08995 * 109.58950 * 294.84856 * 4 3 2 32 32 H 1.08997 * 109.70378 * 174.48742 * 4 3 2 33 33 H 1.07991 * 120.04307 * 0.04734 * 9 8 6 34 34 H 1.08003 * 119.83487 * 180.02562 * 10 9 8 35 35 H 1.08002 * 119.79887 * 179.97438 * 11 10 9 36 36 H 1.08000 * 119.96432 * 180.30117 * 12 11 10 37 37 H 0.96998 * 119.99865 * 179.97438 * 18 17 15 38 38 H 1.08997 * 109.58273 * 173.14838 * 23 5 4 39 39 H 1.08999 * 109.58420 * 293.57099 * 23 5 4 40 40 H 1.09006 * 109.56342 * 185.55063 * 24 23 5 41 41 H 1.09000 * 109.36056 * 65.50246 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4431 0.0000 4 6 3.5714 1.4392 0.0347 5 7 4.0677 0.6239 -1.0823 6 6 4.9611 1.1278 -1.9565 7 8 5.2838 2.2982 -1.8893 8 6 5.5474 0.2594 -2.9952 9 6 6.1694 -0.9395 -2.6395 10 6 6.7157 -1.7460 -3.6145 11 6 6.6517 -1.3734 -4.9477 12 6 6.0350 -0.1944 -5.3146 13 6 5.4843 0.6334 -4.3456 14 8 4.8837 1.7944 -4.7033 15 6 4.7535 2.0348 -6.0234 16 1 5.1921 1.3577 -6.7414 17 6 4.0515 3.1486 -6.4596 18 7 3.9199 3.3802 -7.7475 19 14 3.2928 4.3198 -5.2178 20 1 4.2737 5.3806 -4.8745 21 1 2.0765 4.9403 -5.8014 22 1 2.9253 3.5695 -3.9901 23 6 3.5669 -0.7494 -1.2316 24 6 2.0397 -0.7229 -1.2489 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 1.8931 -0.5134 0.8903 29 1 1.6573 1.9640 0.8776 30 1 1.6976 1.9502 -0.9021 31 1 3.9145 1.0143 0.9780 32 1 3.9437 2.4589 -0.0636 33 1 6.2218 -1.2343 -1.6019 34 1 7.1959 -2.6731 -3.3381 35 1 7.0830 -2.0118 -5.7047 36 1 5.9849 0.0868 -6.3561 37 1 3.4286 4.1590 -8.0525 38 1 3.9343 -1.1726 -2.1665 39 1 3.9096 -1.3564 -0.3937 40 1 1.6570 -1.7435 -1.2601 41 1 1.6974 -0.1958 -2.1395 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194043622.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:07:33 Heat of formation + Delta-G solvation = -64.372057 kcal Electronic energy + Delta-G solvation = -23696.981383 eV Core-core repulsion = 20348.345519 eV Total energy + Delta-G solvation = -3348.635864 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.68233 -40.41752 -38.60595 -38.18833 -34.94115 -34.56164 -32.71900 -31.57099 -30.86174 -29.16010 -27.35507 -25.35744 -24.32078 -23.59570 -22.97739 -21.58388 -20.39465 -19.88666 -18.99444 -18.11364 -17.23702 -16.77824 -16.41735 -15.84008 -15.71348 -15.55606 -15.45189 -15.41377 -15.15546 -14.55679 -14.51406 -14.32787 -14.18729 -14.02991 -13.66069 -13.16622 -12.85631 -12.80634 -12.70437 -12.64881 -12.43485 -12.24271 -12.14451 -11.84862 -11.56401 -11.39885 -11.34548 -11.02021 -10.80651 -9.85304 -9.63031 -9.17863 -8.61529 -6.30814 0.17880 0.61355 1.15941 1.22206 1.40058 1.66831 2.09143 2.17607 2.68050 2.95725 3.05539 3.56993 3.78739 3.83350 3.93750 4.05914 4.11476 4.23502 4.31595 4.42007 4.49714 4.53718 4.56243 4.71885 4.74123 4.80183 4.82466 4.91279 4.93600 5.04589 5.07716 5.08888 5.18910 5.28968 5.34606 5.47002 5.51763 5.58262 5.65149 5.68775 5.81896 6.13717 6.36769 6.74565 7.18314 7.52082 8.49697 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.012330 B = 0.007123 C = 0.005277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2270.310459 B = 3930.201541 C = 5305.089512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.084 4.084 3 C -0.128 4.128 4 C 0.107 3.893 5 N -0.607 5.607 6 C 0.566 3.434 7 O -0.588 6.588 8 C -0.220 4.220 9 C -0.035 4.035 10 C -0.179 4.179 11 C -0.048 4.048 12 C -0.241 4.241 13 C 0.153 3.847 14 O -0.235 6.235 15 C -0.398 4.398 16 H 0.094 0.906 17 C 0.026 3.974 18 N -0.909 5.909 19 Si 0.955 3.045 20 H -0.275 1.275 21 H -0.256 1.256 22 H -0.283 1.283 23 C 0.102 3.898 24 C -0.132 4.132 25 H 0.035 0.965 26 H 0.070 0.930 27 H 0.066 0.934 28 H 0.100 0.900 29 H 0.097 0.903 30 H 0.029 0.971 31 H 0.101 0.899 32 H 0.058 0.942 33 H 0.158 0.842 34 H 0.169 0.831 35 H 0.153 0.847 36 H 0.116 0.884 37 H 0.286 0.714 38 H 0.082 0.918 39 H 0.107 0.893 40 H 0.104 0.896 41 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.153 -14.529 17.459 22.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.103 4.103 3 C -0.166 4.166 4 C -0.015 4.015 5 N -0.340 5.340 6 C 0.356 3.644 7 O -0.469 6.469 8 C -0.224 4.224 9 C -0.053 4.053 10 C -0.197 4.197 11 C -0.066 4.066 12 C -0.260 4.260 13 C 0.101 3.899 14 O -0.141 6.141 15 C -0.474 4.474 16 H 0.112 0.888 17 C -0.174 4.174 18 N -0.550 5.550 19 Si 0.780 3.220 20 H -0.201 1.201 21 H -0.181 1.181 22 H -0.209 1.209 23 C -0.019 4.019 24 C -0.170 4.170 25 H 0.054 0.946 26 H 0.089 0.911 27 H 0.085 0.915 28 H 0.118 0.882 29 H 0.115 0.885 30 H 0.048 0.952 31 H 0.119 0.881 32 H 0.076 0.924 33 H 0.176 0.824 34 H 0.186 0.814 35 H 0.170 0.830 36 H 0.134 0.866 37 H 0.096 0.904 38 H 0.101 0.899 39 H 0.125 0.875 40 H 0.123 0.877 41 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -3.193 -13.585 17.461 22.353 hybrid contribution -0.285 1.336 -0.650 1.513 sum -3.478 -12.249 16.811 21.089 Atomic orbital electron populations 1.21807 0.94293 1.02556 1.01499 1.21120 0.96283 0.94306 0.98575 1.21995 0.94143 0.98491 1.01996 1.21719 0.94763 0.95881 0.89128 1.48132 1.42009 1.16019 1.27869 1.18548 0.78874 0.86290 0.80691 1.90704 1.63750 1.19125 1.73349 1.19120 1.13191 1.00273 0.89802 1.21217 0.93470 0.89463 1.01161 1.21227 1.04716 1.02196 0.91528 1.21421 0.93764 0.93499 0.97965 1.21311 1.06951 0.98597 0.99181 1.19631 0.91613 0.85273 0.93345 1.83596 1.69914 1.34139 1.26484 1.20816 1.35643 1.11736 0.79207 0.88826 1.24990 0.96600 0.98300 0.97515 1.69666 1.41957 1.29683 1.13647 0.85458 0.78832 0.79005 0.78754 1.20104 1.18054 1.20870 1.22004 0.94657 0.81155 1.04121 1.21962 0.94783 1.02395 0.97869 0.94605 0.91054 0.91516 0.88204 0.88506 0.95179 0.88074 0.92370 0.82419 0.81404 0.82955 0.86605 0.90370 0.89943 0.87519 0.87742 0.94967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.31 9.19 71.98 0.66 -1.65 16 2 C -0.08 -1.51 2.68 -10.77 -0.03 -1.54 16 3 C -0.13 -3.00 5.36 30.67 0.16 -2.84 16 4 C 0.11 2.92 6.45 86.36 0.56 3.47 16 5 N -0.61 -19.41 2.98 -823.50 -2.45 -21.86 16 6 C 0.57 24.40 6.83 86.70 0.59 24.99 16 7 O -0.59 -31.33 16.16 -0.59 -0.01 -31.34 16 8 C -0.22 -8.99 4.61 -19.99 -0.09 -9.08 16 9 C -0.03 -1.00 7.79 22.52 0.18 -0.82 16 10 C -0.18 -4.47 10.02 22.25 0.22 -4.25 16 11 C -0.05 -1.48 10.03 22.30 0.22 -1.26 16 12 C -0.24 -10.32 9.16 22.36 0.20 -10.11 16 13 C 0.15 7.52 6.64 22.91 0.15 7.67 16 14 O -0.24 -13.93 7.78 -16.67 -0.13 -14.06 16 15 C -0.40 -24.43 9.95 67.93 0.68 -23.76 16 16 H 0.09 5.80 5.44 -2.91 -0.02 5.78 16 17 C 0.03 1.59 5.49 84.85 0.47 2.05 16 18 N -0.91 -55.52 13.96 21.62 0.30 -55.22 16 19 Si 0.95 50.93 28.62 68.60 1.96 52.89 16 20 H -0.28 -14.67 7.11 99.48 0.71 -13.96 16 21 H -0.26 -12.32 7.11 99.48 0.71 -11.61 16 22 H -0.28 -16.11 7.11 99.48 0.71 -15.41 16 23 C 0.10 2.33 5.54 86.22 0.48 2.80 16 24 C -0.13 -2.79 5.34 30.52 0.16 -2.62 16 25 H 0.03 0.71 8.14 -2.38 -0.02 0.69 16 26 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 27 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 28 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 29 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 30 H 0.03 0.92 8.14 -2.38 -0.02 0.90 16 31 H 0.10 1.99 8.14 -2.39 -0.02 1.97 16 32 H 0.06 1.98 6.99 -2.39 -0.02 1.96 16 33 H 0.16 3.27 7.76 -2.92 -0.02 3.25 16 34 H 0.17 2.61 8.06 -2.91 -0.02 2.59 16 35 H 0.15 3.52 8.06 -2.91 -0.02 3.49 16 36 H 0.12 5.41 5.64 -2.91 -0.02 5.39 16 37 H 0.29 16.07 8.31 -92.71 -0.77 15.30 16 38 H 0.08 2.09 5.40 -2.39 -0.01 2.08 16 39 H 0.11 1.57 8.14 -2.39 -0.02 1.55 16 40 H 0.10 1.58 8.14 -2.38 -0.02 1.56 16 41 H 0.03 0.92 8.14 -2.39 -0.02 0.90 16 Total: -1.00 -80.60 332.98 5.31 -75.29 By element: Atomic # 1 Polarization: 10.20 SS G_CDS: 1.02 Total: 11.22 kcal Atomic # 6 Polarization: -21.54 SS G_CDS: 4.62 Total: -16.92 kcal Atomic # 7 Polarization: -74.93 SS G_CDS: -2.15 Total: -77.08 kcal Atomic # 8 Polarization: -45.26 SS G_CDS: -0.14 Total: -45.40 kcal Atomic # 14 Polarization: 50.93 SS G_CDS: 1.96 Total: 52.89 kcal Total: -80.60 5.31 -75.29 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194043622.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.914 kcal (2) G-P(sol) polarization free energy of solvation -80.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds