Wall clock time and date at job start Tue Mar 31 2020 06:16:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38409 * 119.82205 * 2 1 4 4 C 1.37885 * 120.16777 * 180.02562 * 3 2 1 5 5 C 1.39853 * 119.82831 * 359.97438 * 4 3 2 6 6 C 1.47165 * 120.17034 * 179.97438 * 5 4 3 7 7 O 1.21248 * 120.00642 * 0.02562 * 6 5 4 8 8 C 1.50703 * 119.99722 * 179.97438 * 6 5 4 9 9 C 1.53002 * 109.47014 * 179.97438 * 8 6 5 10 10 C 1.50703 * 109.47014 * 180.02562 * 9 8 6 11 11 O 1.21277 * 120.00063 * 359.97438 * 10 9 8 12 12 N 1.34773 * 119.99847 * 180.02562 * 10 9 8 13 13 C 1.46504 * 120.00111 * 179.97438 * 12 10 9 14 14 H 1.09001 * 109.46891 * 325.00262 * 13 12 10 15 15 C 1.53006 * 109.46883 * 84.99828 * 13 12 10 16 16 C 1.50697 * 109.47650 * 205.00149 * 13 12 10 17 17 H 1.08002 * 119.99362 * 359.97438 * 16 13 12 18 18 C 1.37867 * 120.00258 * 180.02562 * 16 13 12 19 19 N 1.31511 * 120.00203 * 359.97438 * 18 16 13 20 20 Si 1.86805 * 120.00057 * 179.97438 * 18 16 13 21 21 H 1.48499 * 109.47094 * 89.99954 * 20 18 16 22 22 H 1.48499 * 109.46907 * 209.99714 * 20 18 16 23 23 H 1.48495 * 109.46933 * 330.00015 * 20 18 16 24 24 C 1.39850 * 119.65449 * 0.25259 * 5 4 3 25 25 C 1.37890 * 119.82518 * 359.47284 * 24 5 4 26 26 H 1.08996 * 109.47087 * 90.00216 * 1 2 3 27 27 H 1.08996 * 109.46718 * 210.00390 * 1 2 3 28 28 H 1.09002 * 109.47170 * 329.99950 * 1 2 3 29 29 H 1.07995 * 119.91843 * 359.97438 * 3 2 1 30 30 H 1.08004 * 120.08316 * 179.97438 * 4 3 2 31 31 H 1.09001 * 109.47340 * 60.00001 * 8 6 5 32 32 H 1.09002 * 109.47083 * 300.00132 * 8 6 5 33 33 H 1.08999 * 109.47001 * 60.00707 * 9 8 6 34 34 H 1.08988 * 109.47340 * 300.00233 * 9 8 6 35 35 H 0.97003 * 120.00265 * 0.02562 * 12 10 9 36 36 H 1.09000 * 109.47050 * 180.02562 * 15 13 12 37 37 H 1.09001 * 109.46801 * 300.00349 * 15 13 12 38 38 H 1.09001 * 109.46998 * 59.99945 * 15 13 12 39 39 H 0.97006 * 120.00645 * 180.02562 * 19 18 16 40 40 H 1.08002 * 120.08338 * 179.72575 * 24 5 4 41 41 H 1.08000 * 119.91376 * 180.25055 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1954 1.2008 0.0000 4 6 3.5742 1.2091 -0.0005 5 6 4.2771 0.0001 -0.0005 6 6 5.7488 0.0002 -0.0017 7 8 6.3551 1.0502 -0.0021 8 6 6.5023 -1.3049 -0.0011 9 6 8.0066 -1.0253 -0.0031 10 6 8.7601 -2.3304 -0.0032 11 8 8.1537 -3.3807 -0.0012 12 7 10.1078 -2.3304 -0.0043 13 6 10.8404 -3.5991 -0.0038 14 1 10.2935 -4.3341 0.5867 15 6 10.9853 -4.1049 -1.4406 16 6 12.2073 -3.3898 0.5953 17 1 12.5010 -2.4096 0.9407 18 6 13.0830 -4.4493 0.7015 19 7 12.7255 -5.6427 0.2804 20 14 14.7776 -4.1896 1.4435 21 1 14.7158 -4.4158 2.9098 22 1 15.7363 -5.1466 0.8350 23 1 15.2277 -2.8001 1.1755 24 6 3.5743 -1.2089 -0.0053 25 6 2.1954 -1.2007 0.0010 26 1 -0.3633 0.0000 -1.0276 27 1 -0.3632 -0.8899 0.5139 28 1 -0.3633 0.8900 0.5138 29 1 1.6512 2.1336 -0.0004 30 1 4.1099 2.1469 -0.0010 31 1 6.2383 -1.8773 -0.8903 32 1 6.2397 -1.8757 0.8896 33 1 8.2709 -0.4528 0.8860 34 1 8.2688 -0.4547 -0.8939 35 1 10.5928 -1.4903 -0.0048 36 1 11.5299 -5.0491 -1.4402 37 1 9.9966 -4.2563 -1.8738 38 1 11.5321 -3.3698 -2.0311 39 1 13.3415 -6.3883 0.3554 40 1 4.1101 -2.1466 -0.0099 41 1 1.6512 -2.1335 0.0013 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194719365.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:56 Heat of formation + Delta-G solvation = -71.298177 kcal Electronic energy + Delta-G solvation = -21537.832881 eV Core-core repulsion = 18188.896678 eV Total energy + Delta-G solvation = -3348.936203 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.31540 -38.99225 -38.36432 -34.85120 -33.38427 -32.63463 -32.27061 -31.22025 -29.09530 -28.01037 -25.37665 -25.13815 -22.91175 -22.37281 -20.90032 -19.65005 -19.30878 -17.62279 -16.65359 -16.05836 -15.76845 -15.57796 -15.33744 -15.16311 -14.46056 -14.35995 -14.04837 -14.02910 -13.91610 -13.77293 -12.87540 -12.68121 -12.55680 -12.36784 -12.15624 -11.92660 -11.77133 -11.64912 -11.26363 -11.09906 -11.04198 -10.93093 -10.69800 -10.29691 -10.22290 -9.77856 -9.28541 -9.04813 -9.00475 -8.99100 -8.53467 -7.88620 -6.11212 -4.20313 0.42830 1.09751 2.24758 3.25564 3.32049 3.34165 3.43151 3.52545 3.73937 4.25251 4.42491 4.47006 4.51369 4.68384 4.83082 4.91594 5.08208 5.18231 5.20608 5.23129 5.26207 5.35325 5.42811 5.59628 5.69028 5.72829 5.85467 5.98474 6.01095 6.09135 6.15477 6.21147 6.60462 6.83984 6.98115 7.16783 7.42514 7.48426 7.58122 7.71295 7.93068 8.16524 8.69573 8.79498 9.15285 9.47385 10.94748 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.041101 B = 0.002456 C = 0.002375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 681.088624 B =11396.773237 C =11784.486182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.059 4.059 3 C -0.137 4.137 4 C -0.059 4.059 5 C -0.174 4.174 6 C 0.397 3.603 7 O -0.456 6.456 8 C -0.148 4.148 9 C -0.134 4.134 10 C 0.501 3.499 11 O -0.560 6.560 12 N -0.709 5.709 13 C 0.263 3.737 14 H 0.048 0.952 15 C -0.147 4.147 16 C -0.533 4.533 17 H 0.061 0.939 18 C 0.065 3.935 19 N -0.884 5.884 20 Si 0.902 3.098 21 H -0.280 1.280 22 H -0.285 1.285 23 H -0.274 1.274 24 C -0.065 4.065 25 C -0.135 4.135 26 H 0.074 0.926 27 H 0.069 0.931 28 H 0.068 0.932 29 H 0.127 0.873 30 H 0.133 0.867 31 H 0.107 0.893 32 H 0.107 0.893 33 H 0.093 0.907 34 H 0.092 0.908 35 H 0.390 0.610 36 H 0.090 0.910 37 H 0.014 0.986 38 H 0.026 0.974 39 H 0.264 0.736 40 H 0.138 0.862 41 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.504 11.755 -1.266 24.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.059 4.059 3 C -0.155 4.155 4 C -0.077 4.077 5 C -0.175 4.175 6 C 0.275 3.725 7 O -0.331 6.331 8 C -0.185 4.185 9 C -0.174 4.174 10 C 0.286 3.714 11 O -0.441 6.441 12 N -0.357 5.357 13 C 0.161 3.839 14 H 0.066 0.934 15 C -0.205 4.205 16 C -0.572 4.572 17 H 0.079 0.921 18 C -0.138 4.138 19 N -0.522 5.522 20 Si 0.729 3.271 21 H -0.206 1.206 22 H -0.211 1.211 23 H -0.198 1.198 24 C -0.083 4.083 25 C -0.153 4.153 26 H 0.093 0.907 27 H 0.088 0.912 28 H 0.087 0.913 29 H 0.144 0.856 30 H 0.151 0.849 31 H 0.125 0.875 32 H 0.125 0.875 33 H 0.111 0.889 34 H 0.110 0.890 35 H 0.222 0.778 36 H 0.108 0.892 37 H 0.033 0.967 38 H 0.045 0.955 39 H 0.074 0.926 40 H 0.156 0.844 41 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -21.502 11.337 -1.283 24.342 hybrid contribution 1.166 0.419 0.362 1.291 sum -20.336 11.756 -0.921 23.508 Atomic orbital electron populations 1.20882 0.90923 1.03138 1.02682 1.20224 0.96361 0.93251 0.96037 1.21019 0.93970 0.97784 1.02756 1.21427 0.94016 0.97896 0.94363 1.20564 0.95158 0.94338 1.07420 1.22626 0.88151 0.90923 0.70760 1.90505 1.71099 1.35082 1.36430 1.21748 0.94685 0.96040 1.06056 1.21473 0.94035 0.96971 1.04914 1.20410 0.83454 0.90452 0.77114 1.90637 1.68380 1.33553 1.51481 1.46539 1.05377 1.11701 1.72050 1.18741 0.90682 0.80503 0.93951 0.93401 1.22074 0.98064 1.02981 0.97408 1.21232 0.98622 0.95929 1.41368 0.92071 1.24895 0.98737 0.94969 0.95193 1.69903 1.36223 1.00109 1.45920 0.86441 0.83318 0.78042 0.79251 1.20567 1.21085 1.19848 1.21594 0.94331 0.97756 0.94643 1.21061 0.94119 0.97827 1.02293 0.90717 0.91157 0.91280 0.85555 0.84928 0.87523 0.87472 0.88902 0.88975 0.77804 0.89173 0.96674 0.95492 0.92601 0.84421 0.85321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.62 10.00 36.01 0.36 -0.26 16 2 C -0.06 -0.46 5.89 -104.50 -0.62 -1.08 16 3 C -0.14 -1.15 9.68 -39.65 -0.38 -1.53 16 4 C -0.06 -0.60 9.60 -39.11 -0.38 -0.97 16 5 C -0.17 -1.92 5.87 -105.07 -0.62 -2.53 16 6 C 0.40 5.00 7.12 -30.68 -0.22 4.78 16 7 O -0.46 -6.78 15.98 5.58 0.09 -6.70 16 8 C -0.15 -1.90 3.60 -27.88 -0.10 -2.00 16 9 C -0.13 -1.97 4.99 -27.88 -0.14 -2.11 16 10 C 0.50 9.85 7.79 -10.99 -0.09 9.76 16 11 O -0.56 -12.92 15.64 5.56 0.09 -12.84 16 12 N -0.71 -14.95 5.07 -54.93 -0.28 -15.23 16 13 C 0.26 6.76 2.56 -69.08 -0.18 6.59 16 14 H 0.05 1.41 7.58 -51.93 -0.39 1.02 16 15 C -0.15 -3.69 9.26 37.16 0.34 -3.34 16 16 C -0.53 -14.28 8.73 -34.45 -0.30 -14.58 16 17 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 18 C 0.07 1.77 5.30 -17.82 -0.09 1.67 16 19 N -0.88 -25.06 11.32 55.43 0.63 -24.43 16 20 Si 0.90 20.82 29.54 -169.99 -5.02 15.79 16 21 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 22 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 23 H -0.27 -6.19 7.11 56.52 0.40 -5.78 16 24 C -0.07 -0.62 9.47 -39.11 -0.37 -0.99 16 25 C -0.14 -1.12 9.68 -39.65 -0.38 -1.50 16 26 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.07 0.31 8.08 -51.93 -0.42 -0.11 16 28 H 0.07 0.30 8.08 -51.93 -0.42 -0.12 16 29 H 0.13 0.78 8.06 -52.49 -0.42 0.35 16 30 H 0.13 1.31 7.65 -52.48 -0.40 0.91 16 31 H 0.11 1.33 8.04 -51.93 -0.42 0.91 16 32 H 0.11 1.34 8.05 -51.93 -0.42 0.93 16 33 H 0.09 1.29 8.10 -51.93 -0.42 0.87 16 34 H 0.09 1.26 8.10 -51.94 -0.42 0.84 16 35 H 0.39 7.18 8.54 -40.82 -0.35 6.84 16 36 H 0.09 2.45 6.07 -51.93 -0.32 2.14 16 37 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 38 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 40 H 0.14 1.17 7.05 -52.49 -0.37 0.80 16 41 H 0.13 0.80 8.06 -52.49 -0.42 0.38 16 LS Contribution 350.33 15.07 5.28 5.28 Total: -1.00 -32.09 350.33 -8.37 -40.46 By element: Atomic # 1 Polarization: 11.74 SS G_CDS: -6.00 Total: 5.74 kcal Atomic # 6 Polarization: -4.93 SS G_CDS: -3.16 Total: -8.09 kcal Atomic # 7 Polarization: -40.01 SS G_CDS: 0.35 Total: -39.66 kcal Atomic # 8 Polarization: -19.71 SS G_CDS: 0.18 Total: -19.53 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -32.09 -8.37 -40.46 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194719365.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.836 kcal (2) G-P(sol) polarization free energy of solvation -32.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds