Wall clock time and date at job start Tue Mar 31 2020 06:16:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38409 * 119.82205 * 2 1 4 4 C 1.37885 * 120.16777 * 180.02562 * 3 2 1 5 5 C 1.39853 * 119.82831 * 359.97438 * 4 3 2 6 6 C 1.47165 * 120.17034 * 179.97438 * 5 4 3 7 7 O 1.21248 * 120.00642 * 0.02562 * 6 5 4 8 8 C 1.50703 * 119.99722 * 179.97438 * 6 5 4 9 9 C 1.53002 * 109.47014 * 179.97438 * 8 6 5 10 10 C 1.50703 * 109.47014 * 180.02562 * 9 8 6 11 11 O 1.21277 * 120.00063 * 359.97438 * 10 9 8 12 12 N 1.34773 * 119.99847 * 180.02562 * 10 9 8 13 13 C 1.46504 * 120.00111 * 179.97438 * 12 10 9 14 14 H 1.09001 * 109.46891 * 325.00262 * 13 12 10 15 15 C 1.53006 * 109.46883 * 84.99828 * 13 12 10 16 16 C 1.50697 * 109.47650 * 205.00149 * 13 12 10 17 17 H 1.08002 * 119.99362 * 359.97438 * 16 13 12 18 18 C 1.37867 * 120.00258 * 180.02562 * 16 13 12 19 19 N 1.31511 * 120.00203 * 359.97438 * 18 16 13 20 20 Si 1.86805 * 120.00057 * 179.97438 * 18 16 13 21 21 H 1.48499 * 109.47094 * 89.99954 * 20 18 16 22 22 H 1.48499 * 109.46907 * 209.99714 * 20 18 16 23 23 H 1.48495 * 109.46933 * 330.00015 * 20 18 16 24 24 C 1.39850 * 119.65449 * 0.25259 * 5 4 3 25 25 C 1.37890 * 119.82518 * 359.47284 * 24 5 4 26 26 H 1.08996 * 109.47087 * 90.00216 * 1 2 3 27 27 H 1.08996 * 109.46718 * 210.00390 * 1 2 3 28 28 H 1.09002 * 109.47170 * 329.99950 * 1 2 3 29 29 H 1.07995 * 119.91843 * 359.97438 * 3 2 1 30 30 H 1.08004 * 120.08316 * 179.97438 * 4 3 2 31 31 H 1.09001 * 109.47340 * 60.00001 * 8 6 5 32 32 H 1.09002 * 109.47083 * 300.00132 * 8 6 5 33 33 H 1.08999 * 109.47001 * 60.00707 * 9 8 6 34 34 H 1.08988 * 109.47340 * 300.00233 * 9 8 6 35 35 H 0.97003 * 120.00265 * 0.02562 * 12 10 9 36 36 H 1.09000 * 109.47050 * 180.02562 * 15 13 12 37 37 H 1.09001 * 109.46801 * 300.00349 * 15 13 12 38 38 H 1.09001 * 109.46998 * 59.99945 * 15 13 12 39 39 H 0.97006 * 120.00645 * 180.02562 * 19 18 16 40 40 H 1.08002 * 120.08338 * 179.72575 * 24 5 4 41 41 H 1.08000 * 119.91376 * 180.25055 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1954 1.2008 0.0000 4 6 3.5742 1.2091 -0.0005 5 6 4.2771 0.0001 -0.0005 6 6 5.7488 0.0002 -0.0017 7 8 6.3551 1.0502 -0.0021 8 6 6.5023 -1.3049 -0.0011 9 6 8.0066 -1.0253 -0.0031 10 6 8.7601 -2.3304 -0.0032 11 8 8.1537 -3.3807 -0.0012 12 7 10.1078 -2.3304 -0.0043 13 6 10.8404 -3.5991 -0.0038 14 1 10.2935 -4.3341 0.5867 15 6 10.9853 -4.1049 -1.4406 16 6 12.2073 -3.3898 0.5953 17 1 12.5010 -2.4096 0.9407 18 6 13.0830 -4.4493 0.7015 19 7 12.7255 -5.6427 0.2804 20 14 14.7776 -4.1896 1.4435 21 1 14.7158 -4.4158 2.9098 22 1 15.7363 -5.1466 0.8350 23 1 15.2277 -2.8001 1.1755 24 6 3.5743 -1.2089 -0.0053 25 6 2.1954 -1.2007 0.0010 26 1 -0.3633 0.0000 -1.0276 27 1 -0.3632 -0.8899 0.5139 28 1 -0.3633 0.8900 0.5138 29 1 1.6512 2.1336 -0.0004 30 1 4.1099 2.1469 -0.0010 31 1 6.2383 -1.8773 -0.8903 32 1 6.2397 -1.8757 0.8896 33 1 8.2709 -0.4528 0.8860 34 1 8.2688 -0.4547 -0.8939 35 1 10.5928 -1.4903 -0.0048 36 1 11.5299 -5.0491 -1.4402 37 1 9.9966 -4.2563 -1.8738 38 1 11.5321 -3.3698 -2.0311 39 1 13.3415 -6.3883 0.3554 40 1 4.1101 -2.1466 -0.0099 41 1 1.6512 -2.1335 0.0013 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194719365.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:56 Heat of formation + Delta-G solvation = -90.079507 kcal Electronic energy + Delta-G solvation = -21538.647301 eV Core-core repulsion = 18188.896678 eV Total energy + Delta-G solvation = -3349.750623 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.26254 -40.43274 -39.34538 -36.75923 -34.35190 -34.21929 -33.54818 -31.95334 -30.88243 -28.82653 -27.35041 -26.36298 -23.59402 -23.42624 -22.45990 -21.10352 -20.50997 -19.04985 -18.07425 -17.37504 -17.09445 -16.92733 -16.49501 -16.15873 -15.94373 -15.62546 -15.28565 -14.83986 -14.59338 -14.50024 -14.45315 -14.34371 -13.96357 -13.57521 -13.06141 -12.99100 -12.87688 -12.85529 -12.81253 -12.69195 -12.54332 -12.27141 -12.16836 -12.12343 -11.91855 -11.11256 -10.80446 -10.70671 -10.56490 -9.96557 -9.73754 -9.68414 -8.17919 -6.35241 -0.35228 0.42188 1.38421 1.44695 1.44968 1.55902 1.82764 2.33614 2.54543 2.80716 3.09942 3.13303 3.67526 3.86177 3.95352 4.03875 4.12418 4.13685 4.27661 4.41946 4.50354 4.65359 4.76499 4.79853 4.82620 4.85393 4.86203 4.92924 4.97639 5.09686 5.10157 5.24002 5.34579 5.42047 5.44001 5.59334 5.61675 5.69875 5.90709 5.96071 6.10485 6.46396 6.72695 6.96967 7.32177 7.55758 8.88283 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.041101 B = 0.002456 C = 0.002375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 681.088624 B =11396.773237 C =11784.486182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.056 4.056 3 C -0.141 4.141 4 C -0.071 4.071 5 C -0.197 4.197 6 C 0.407 3.593 7 O -0.485 6.485 8 C -0.145 4.145 9 C -0.120 4.120 10 C 0.499 3.501 11 O -0.596 6.596 12 N -0.709 5.709 13 C 0.268 3.732 14 H 0.000 1.000 15 C -0.134 4.134 16 C -0.548 4.548 17 H 0.072 0.928 18 C 0.013 3.987 19 N -0.917 5.917 20 Si 0.973 3.027 21 H -0.277 1.277 22 H -0.283 1.283 23 H -0.261 1.261 24 C -0.071 4.071 25 C -0.141 4.141 26 H 0.085 0.915 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.149 0.851 30 H 0.129 0.871 31 H 0.111 0.889 32 H 0.109 0.891 33 H 0.106 0.894 34 H 0.108 0.892 35 H 0.405 0.595 36 H 0.066 0.934 37 H 0.014 0.986 38 H 0.039 0.961 39 H 0.266 0.734 40 H 0.143 0.857 41 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.549 13.179 -1.085 26.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.056 4.056 3 C -0.158 4.158 4 C -0.089 4.089 5 C -0.198 4.198 6 C 0.287 3.713 7 O -0.363 6.363 8 C -0.182 4.182 9 C -0.160 4.160 10 C 0.287 3.713 11 O -0.479 6.479 12 N -0.357 5.357 13 C 0.165 3.835 14 H 0.018 0.982 15 C -0.192 4.192 16 C -0.586 4.586 17 H 0.090 0.910 18 C -0.187 4.187 19 N -0.555 5.555 20 Si 0.797 3.203 21 H -0.203 1.203 22 H -0.209 1.209 23 H -0.186 1.186 24 C -0.089 4.089 25 C -0.159 4.159 26 H 0.103 0.897 27 H 0.098 0.902 28 H 0.098 0.902 29 H 0.167 0.833 30 H 0.147 0.853 31 H 0.129 0.871 32 H 0.128 0.872 33 H 0.124 0.876 34 H 0.126 0.874 35 H 0.239 0.761 36 H 0.085 0.915 37 H 0.033 0.967 38 H 0.058 0.942 39 H 0.075 0.925 40 H 0.161 0.839 41 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -22.564 12.795 -1.105 25.963 hybrid contribution 1.354 -0.053 0.302 1.388 sum -21.210 12.742 -0.803 24.756 Atomic orbital electron populations 1.20955 0.88731 1.04228 1.03627 1.20622 0.97995 0.92805 0.94159 1.21304 0.93319 0.99146 1.02062 1.21535 0.95010 0.97471 0.94883 1.20488 0.94149 0.95403 1.09734 1.22636 0.88956 0.90049 0.69638 1.90492 1.71730 1.35732 1.38299 1.21729 0.93466 0.96568 1.06457 1.21405 0.94433 0.93916 1.06234 1.21216 0.82873 0.91776 0.75457 1.90618 1.68933 1.35522 1.52787 1.46338 1.06068 1.10806 1.72519 1.18356 0.90366 0.81495 0.93285 0.98183 1.21897 0.97785 1.02124 0.97436 1.21554 0.99018 0.96502 1.41507 0.91031 1.25806 1.02752 0.94621 0.95510 1.70047 1.37619 1.00970 1.46860 0.85335 0.78332 0.78433 0.78171 1.20320 1.20867 1.18551 1.21735 0.95143 0.97438 0.94562 1.21377 0.93711 0.99102 1.01691 0.89668 0.90174 0.90177 0.83347 0.85326 0.87117 0.87248 0.87608 0.87413 0.76064 0.91483 0.96676 0.94237 0.92525 0.83923 0.83240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.86 10.00 71.24 0.71 -0.14 16 2 C -0.06 -0.74 5.89 -19.78 -0.12 -0.86 16 3 C -0.14 -2.09 9.68 22.23 0.22 -1.88 16 4 C -0.07 -1.39 9.60 22.58 0.22 -1.17 16 5 C -0.20 -4.25 5.87 -20.15 -0.12 -4.37 16 6 C 0.41 10.10 7.12 28.03 0.20 10.29 16 7 O -0.48 -14.29 15.98 -2.93 -0.05 -14.33 16 8 C -0.14 -3.65 3.60 29.85 0.11 -3.54 16 9 C -0.12 -3.42 4.99 29.85 0.15 -3.27 16 10 C 0.50 19.64 7.79 87.66 0.68 20.32 16 11 O -0.60 -28.03 15.64 -3.02 -0.05 -28.08 16 12 N -0.71 -29.84 5.07 -446.09 -2.26 -32.10 16 13 C 0.27 14.09 2.56 44.25 0.11 14.20 16 14 H 0.00 0.02 7.58 -2.39 -0.02 0.00 16 15 C -0.13 -6.84 9.26 71.98 0.67 -6.17 16 16 C -0.55 -29.36 8.73 25.60 0.22 -29.14 16 17 H 0.07 3.60 7.74 -2.91 -0.02 3.58 16 18 C 0.01 0.71 5.30 84.65 0.45 1.16 16 19 N -0.92 -52.85 11.32 21.44 0.24 -52.61 16 20 Si 0.97 42.40 29.54 68.60 2.03 44.43 16 21 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 22 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 23 H -0.26 -10.80 7.11 99.48 0.71 -10.10 16 24 C -0.07 -1.28 9.47 22.58 0.21 -1.07 16 25 C -0.14 -2.06 9.68 22.23 0.22 -1.85 16 26 H 0.08 0.49 8.14 -2.39 -0.02 0.47 16 27 H 0.08 0.45 8.08 -2.39 -0.02 0.43 16 28 H 0.08 0.43 8.08 -2.39 -0.02 0.41 16 29 H 0.15 1.46 8.06 -2.91 -0.02 1.44 16 30 H 0.13 2.53 7.65 -2.91 -0.02 2.51 16 31 H 0.11 2.71 8.04 -2.39 -0.02 2.69 16 32 H 0.11 2.72 8.05 -2.39 -0.02 2.70 16 33 H 0.11 2.80 8.10 -2.39 -0.02 2.78 16 34 H 0.11 2.79 8.10 -2.39 -0.02 2.77 16 35 H 0.40 14.54 8.54 -92.71 -0.79 13.75 16 36 H 0.07 3.74 6.07 -2.39 -0.01 3.73 16 37 H 0.01 0.72 8.14 -2.39 -0.02 0.70 16 38 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 39 H 0.27 14.46 8.31 -92.70 -0.77 13.69 16 40 H 0.14 2.33 7.05 -2.91 -0.02 2.31 16 41 H 0.15 1.49 8.06 -2.91 -0.02 1.47 16 Total: -1.00 -69.79 350.33 4.08 -65.70 By element: Atomic # 1 Polarization: 24.24 SS G_CDS: 0.24 Total: 24.48 kcal Atomic # 6 Polarization: -11.41 SS G_CDS: 3.93 Total: -7.48 kcal Atomic # 7 Polarization: -82.69 SS G_CDS: -2.02 Total: -84.71 kcal Atomic # 8 Polarization: -42.32 SS G_CDS: -0.09 Total: -42.41 kcal Atomic # 14 Polarization: 42.40 SS G_CDS: 2.03 Total: 44.43 kcal Total: -69.79 4.08 -65.70 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194719365.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.377 kcal (2) G-P(sol) polarization free energy of solvation -69.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.702 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds