Wall clock time and date at job start Tue Mar 31 2020 07:08:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.05880 * 2 1 4 4 C 1.50975 * 109.11711 * 119.11156 * 2 1 3 5 5 C 1.54037 * 109.04126 * 215.61068 * 4 2 1 6 6 N 1.38722 * 112.88316 * 276.20912 * 5 4 2 7 7 C 1.46894 * 110.99573 * 193.22365 * 6 5 4 8 8 C 1.53001 * 109.47540 * 75.84257 * 7 6 5 9 9 C 1.52999 * 109.47380 * 174.82576 * 8 7 6 10 10 C 1.50698 * 109.47060 * 179.97438 * 9 8 7 11 11 H 1.07991 * 120.00362 * 0.02562 * 10 9 8 12 12 C 1.37884 * 119.99966 * 180.02562 * 10 9 8 13 13 N 1.31511 * 120.00281 * 179.97438 * 12 10 9 14 14 Si 1.86801 * 119.99719 * 0.02562 * 12 10 9 15 15 H 1.48507 * 109.47307 * 90.00257 * 14 12 10 16 16 H 1.48503 * 109.47225 * 209.99754 * 14 12 10 17 17 H 1.48497 * 109.47246 * 330.00071 * 14 12 10 18 18 C 1.47508 * 115.29356 * 65.92354 * 6 5 4 19 19 C 1.51103 * 107.75821 * 271.18713 * 18 6 5 20 20 S 1.82103 * 110.65374 * 97.22762 * 19 18 6 21 21 O 1.42101 * 108.30631 * 204.64659 * 20 19 18 22 22 O 1.42100 * 108.26806 * 74.35340 * 20 19 18 23 23 H 1.09005 * 109.47536 * 300.88866 * 1 2 3 24 24 H 1.09006 * 109.47323 * 60.88755 * 1 2 3 25 25 H 1.09000 * 109.46966 * 180.88758 * 1 2 3 26 26 H 1.09003 * 109.47086 * 167.81436 * 3 2 1 27 27 H 1.08995 * 109.47101 * 287.81654 * 3 2 1 28 28 H 1.09003 * 109.46992 * 47.81723 * 3 2 1 29 29 H 1.08994 * 109.54321 * 95.74123 * 4 2 1 30 30 H 1.09004 * 109.54682 * 335.47536 * 4 2 1 31 31 H 1.08996 * 108.79943 * 155.33250 * 5 4 2 32 32 H 1.08995 * 108.71162 * 37.02277 * 5 4 2 33 33 H 1.09000 * 109.47688 * 315.83930 * 7 6 5 34 34 H 1.09009 * 109.46909 * 195.84097 * 7 6 5 35 35 H 1.09001 * 109.46894 * 294.82841 * 8 7 6 36 36 H 1.08997 * 109.47280 * 54.82574 * 8 7 6 37 37 H 1.09001 * 109.47323 * 300.00003 * 9 8 7 38 38 H 1.09006 * 109.46850 * 60.00398 * 9 8 7 39 39 H 0.96995 * 120.00138 * 180.02562 * 13 12 10 40 40 H 1.09005 * 109.79995 * 30.75246 * 18 6 5 41 41 H 1.08999 * 109.80093 * 151.62277 * 18 6 5 42 42 H 1.09001 * 109.24220 * 336.92477 * 19 18 6 43 43 H 1.08997 * 109.20656 * 217.50707 * 19 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0296 1.4462 0.0000 4 6 2.0244 -0.6940 1.2463 5 6 3.3075 0.0043 1.7349 6 7 4.4477 -0.4468 1.0862 7 6 5.6613 0.0008 1.7824 8 6 5.8665 -0.8419 3.0428 9 6 7.1963 -0.4638 3.6982 10 6 7.3981 -1.2935 4.9400 11 1 6.6527 -2.0182 5.2323 12 6 8.5344 -1.1272 5.7030 13 7 8.7104 -1.8508 6.7870 14 14 9.8234 0.1269 5.1979 15 1 9.5117 1.4369 5.8240 16 1 11.1625 -0.3307 5.6481 17 1 9.8208 0.2716 3.7200 18 6 4.5187 -0.1349 -0.3537 19 6 3.8518 -1.2646 -1.1035 20 16 2.1277 -0.8388 -1.5061 21 8 1.3953 -2.0461 -1.6651 22 8 2.1383 0.1051 -2.5682 23 1 -0.3634 0.5276 0.8819 24 1 -0.3634 0.5000 -0.8979 25 1 -0.3633 -1.0275 0.0159 26 1 3.0977 1.4616 0.2169 27 1 1.8510 1.8922 -0.9783 28 1 1.4960 2.0149 0.7615 29 1 2.2409 -1.7381 1.0207 30 1 1.2609 -0.6380 2.0222 31 1 3.4185 -0.1732 2.8046 32 1 3.2082 1.0765 1.5657 33 1 5.5552 1.0495 2.0598 34 1 6.5219 -0.1154 1.1235 35 1 5.0510 -0.6552 3.7415 36 1 5.8808 -1.8984 2.7752 37 1 8.0118 -0.6506 2.9995 38 1 7.1819 0.5927 3.9660 39 1 9.5096 -1.7336 7.3240 40 1 3.9968 0.8007 -0.5550 41 1 5.5607 -0.0511 -0.6625 42 1 3.8652 -2.1628 -0.4860 43 1 4.3996 -1.4551 -2.0264 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194976048.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:08:19 Heat of formation + Delta-G solvation = -43.337053 kcal Electronic energy + Delta-G solvation = -22376.505516 eV Core-core repulsion = 19164.225749 eV Total energy + Delta-G solvation = -3212.279766 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.150 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.18393 -37.21574 -36.43286 -36.15839 -34.03838 -32.36166 -31.20121 -29.39045 -28.11640 -26.59205 -24.25112 -23.05726 -22.12709 -20.47009 -19.99896 -18.52544 -17.28298 -17.16716 -16.71264 -16.30498 -15.78534 -15.32553 -15.01513 -14.41779 -14.17644 -13.94573 -13.66480 -13.40877 -13.30853 -12.87716 -12.86155 -12.62034 -12.29458 -12.24041 -12.13694 -11.94857 -11.89967 -11.69422 -11.50863 -11.23089 -11.05147 -10.97025 -10.74990 -10.58253 -10.14542 -9.95232 -9.73280 -9.63308 -9.21720 -8.56635 -8.15068 -6.06767 -4.04865 -0.23028 2.46051 3.27259 3.35283 3.37774 3.39502 3.59805 3.86916 4.11513 4.19640 4.42129 4.51720 4.57003 4.61834 4.77894 4.93608 5.02756 5.16071 5.19426 5.23603 5.27199 5.31911 5.41831 5.47752 5.55443 5.61260 5.68513 5.75426 5.76717 5.84840 5.95809 6.05925 6.45662 6.46941 6.86178 7.05380 7.29908 7.32158 7.44277 7.77055 8.51847 8.98772 9.55661 11.06805 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.033701 B = 0.003466 C = 0.003401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 830.644934 B = 8077.694747 C = 8231.478183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.522 4.522 3 C -0.165 4.165 4 C -0.096 4.096 5 C 0.043 3.957 6 N -0.559 5.559 7 C 0.059 3.941 8 C -0.098 4.098 9 C -0.014 4.014 10 C -0.519 4.519 11 H 0.071 0.929 12 C 0.065 3.935 13 N -0.904 5.904 14 Si 0.880 3.120 15 H -0.278 1.278 16 H -0.288 1.288 17 H -0.266 1.266 18 C 0.060 3.940 19 C -0.593 4.593 20 S 2.398 3.602 21 O -0.942 6.942 22 O -0.943 6.943 23 H 0.081 0.919 24 H 0.064 0.936 25 H 0.077 0.923 26 H 0.095 0.905 27 H 0.076 0.924 28 H 0.080 0.920 29 H 0.081 0.919 30 H 0.092 0.908 31 H 0.091 0.909 32 H 0.048 0.952 33 H 0.036 0.964 34 H 0.072 0.928 35 H 0.053 0.947 36 H 0.063 0.937 37 H 0.015 0.985 38 H 0.009 0.991 39 H 0.263 0.737 40 H 0.067 0.933 41 H 0.096 0.904 42 H 0.151 0.849 43 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.248 6.305 -15.760 22.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.613 4.613 3 C -0.222 4.222 4 C -0.135 4.135 5 C -0.086 4.086 6 N -0.283 5.283 7 C -0.067 4.067 8 C -0.136 4.136 9 C -0.051 4.051 10 C -0.557 4.557 11 H 0.090 0.910 12 C -0.136 4.136 13 N -0.543 5.543 14 Si 0.708 3.292 15 H -0.204 1.204 16 H -0.214 1.214 17 H -0.191 1.191 18 C -0.067 4.067 19 C -0.724 4.724 20 S 2.581 3.419 21 O -0.939 6.939 22 O -0.940 6.940 23 H 0.100 0.900 24 H 0.083 0.917 25 H 0.096 0.904 26 H 0.113 0.887 27 H 0.095 0.905 28 H 0.099 0.901 29 H 0.099 0.901 30 H 0.110 0.890 31 H 0.109 0.891 32 H 0.065 0.935 33 H 0.054 0.946 34 H 0.091 0.909 35 H 0.071 0.929 36 H 0.082 0.918 37 H 0.033 0.967 38 H 0.027 0.973 39 H 0.073 0.927 40 H 0.085 0.915 41 H 0.114 0.886 42 H 0.169 0.831 43 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -14.629 5.643 -16.369 22.667 hybrid contribution 1.140 1.428 0.519 1.899 sum -13.489 7.071 -15.850 21.981 Atomic orbital electron populations 1.21768 0.89395 1.04039 1.03944 1.29443 1.06312 1.08313 1.17237 1.22565 1.03311 0.91907 1.04438 1.21410 0.97897 0.99289 0.94889 1.21135 0.88896 0.98063 1.00481 1.58215 1.03705 1.65128 1.01234 1.22404 0.89728 0.97513 0.97018 1.21507 0.99255 0.99433 0.93434 1.19554 0.92885 0.96368 0.96334 1.21132 1.06090 1.21521 1.07006 0.91042 1.25046 0.98008 0.95795 0.94710 1.69912 1.28035 1.40689 1.15660 0.86772 0.81140 0.81864 0.79426 1.20383 1.21412 1.19072 1.21877 1.02838 0.94006 0.88024 1.30136 1.21334 1.10268 1.10623 1.09060 0.78866 0.76094 0.77835 1.93559 1.69859 1.45284 1.85186 1.93548 1.86571 1.63428 1.50475 0.90020 0.91721 0.90435 0.88704 0.90514 0.90131 0.90089 0.88992 0.89080 0.93470 0.94599 0.90905 0.92866 0.91787 0.96657 0.97308 0.92743 0.91520 0.88605 0.83087 0.84732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.01 7.96 37.16 0.30 -0.72 16 2 C -0.52 -4.42 0.80 -91.64 -0.07 -4.49 16 3 C -0.17 -1.27 6.45 37.16 0.24 -1.03 16 4 C -0.10 -0.84 5.04 -27.21 -0.14 -0.97 16 5 C 0.04 0.44 4.58 -7.46 -0.03 0.41 16 6 N -0.56 -6.35 3.74 -240.97 -0.90 -7.26 16 7 C 0.06 0.82 5.01 -3.83 -0.02 0.80 16 8 C -0.10 -1.78 5.15 -26.73 -0.14 -1.92 16 9 C -0.01 -0.31 4.04 -27.88 -0.11 -0.42 16 10 C -0.52 -14.49 9.66 -34.44 -0.33 -14.83 16 11 H 0.07 2.15 7.99 -52.49 -0.42 1.73 16 12 C 0.07 1.88 5.47 -17.82 -0.10 1.78 16 13 N -0.90 -27.63 13.96 55.43 0.77 -26.86 16 14 Si 0.88 21.30 27.47 -169.99 -4.67 16.63 16 15 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 16 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 17 H -0.27 -6.13 6.54 56.52 0.37 -5.76 16 18 C 0.06 0.56 5.37 -4.45 -0.02 0.54 16 19 C -0.59 -5.32 5.75 36.20 0.21 -5.11 16 20 S 2.40 24.99 4.29 -107.50 -0.46 24.53 16 21 O -0.94 -12.71 17.64 -57.87 -1.02 -13.73 16 22 O -0.94 -12.11 16.96 -57.87 -0.98 -13.09 16 23 H 0.08 0.50 8.09 -51.93 -0.42 0.08 16 24 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 25 H 0.08 0.60 7.94 -51.93 -0.41 0.19 16 26 H 0.10 0.72 2.73 -51.93 -0.14 0.58 16 27 H 0.08 0.60 7.23 -51.93 -0.38 0.22 16 28 H 0.08 0.53 8.07 -51.93 -0.42 0.11 16 29 H 0.08 0.73 7.13 -51.93 -0.37 0.36 16 30 H 0.09 0.69 7.68 -51.93 -0.40 0.29 16 31 H 0.09 1.04 6.38 -51.93 -0.33 0.71 16 32 H 0.05 0.43 4.70 -51.93 -0.24 0.18 16 33 H 0.04 0.47 7.97 -51.93 -0.41 0.06 16 34 H 0.07 0.98 7.36 -51.92 -0.38 0.59 16 35 H 0.05 0.96 6.84 -51.93 -0.36 0.61 16 36 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 37 H 0.02 0.35 7.20 -51.93 -0.37 -0.03 16 38 H 0.01 0.19 7.57 -51.93 -0.39 -0.20 16 39 H 0.26 7.51 8.31 -40.82 -0.34 7.18 16 40 H 0.07 0.54 4.01 -51.93 -0.21 0.33 16 41 H 0.10 0.84 7.28 -51.93 -0.38 0.46 16 42 H 0.15 1.38 7.49 -51.93 -0.39 0.99 16 43 H 0.13 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 326.51 15.07 4.92 4.92 Total: -1.00 -34.05 326.51 -9.42 -43.48 By element: Atomic # 1 Polarization: 4.19 SS G_CDS: -6.86 Total: -2.68 kcal Atomic # 6 Polarization: -25.73 SS G_CDS: -0.22 Total: -25.95 kcal Atomic # 7 Polarization: -33.99 SS G_CDS: -0.13 Total: -34.11 kcal Atomic # 8 Polarization: -24.82 SS G_CDS: -2.00 Total: -26.82 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -4.67 Total: 16.63 kcal Atomic # 16 Polarization: 24.99 SS G_CDS: -0.46 Total: 24.53 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -34.05 -9.42 -43.48 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194976048.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.142 kcal (2) G-P(sol) polarization free energy of solvation -34.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds