Wall clock time and date at job start Tue Mar 31 2020 07:08:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.05880 * 2 1 4 4 C 1.50975 * 109.11711 * 119.11156 * 2 1 3 5 5 C 1.54037 * 109.04126 * 215.61068 * 4 2 1 6 6 N 1.38722 * 112.88316 * 276.20912 * 5 4 2 7 7 C 1.46894 * 110.99573 * 193.22365 * 6 5 4 8 8 C 1.53001 * 109.47540 * 75.84257 * 7 6 5 9 9 C 1.52999 * 109.47380 * 174.82576 * 8 7 6 10 10 C 1.50698 * 109.47060 * 179.97438 * 9 8 7 11 11 H 1.07991 * 120.00362 * 0.02562 * 10 9 8 12 12 C 1.37884 * 119.99966 * 180.02562 * 10 9 8 13 13 N 1.31511 * 120.00281 * 179.97438 * 12 10 9 14 14 Si 1.86801 * 119.99719 * 0.02562 * 12 10 9 15 15 H 1.48507 * 109.47307 * 90.00257 * 14 12 10 16 16 H 1.48503 * 109.47225 * 209.99754 * 14 12 10 17 17 H 1.48497 * 109.47246 * 330.00071 * 14 12 10 18 18 C 1.47508 * 115.29356 * 65.92354 * 6 5 4 19 19 C 1.51103 * 107.75821 * 271.18713 * 18 6 5 20 20 S 1.82103 * 110.65374 * 97.22762 * 19 18 6 21 21 O 1.42101 * 108.30631 * 204.64659 * 20 19 18 22 22 O 1.42100 * 108.26806 * 74.35340 * 20 19 18 23 23 H 1.09005 * 109.47536 * 300.88866 * 1 2 3 24 24 H 1.09006 * 109.47323 * 60.88755 * 1 2 3 25 25 H 1.09000 * 109.46966 * 180.88758 * 1 2 3 26 26 H 1.09003 * 109.47086 * 167.81436 * 3 2 1 27 27 H 1.08995 * 109.47101 * 287.81654 * 3 2 1 28 28 H 1.09003 * 109.46992 * 47.81723 * 3 2 1 29 29 H 1.08994 * 109.54321 * 95.74123 * 4 2 1 30 30 H 1.09004 * 109.54682 * 335.47536 * 4 2 1 31 31 H 1.08996 * 108.79943 * 155.33250 * 5 4 2 32 32 H 1.08995 * 108.71162 * 37.02277 * 5 4 2 33 33 H 1.09000 * 109.47688 * 315.83930 * 7 6 5 34 34 H 1.09009 * 109.46909 * 195.84097 * 7 6 5 35 35 H 1.09001 * 109.46894 * 294.82841 * 8 7 6 36 36 H 1.08997 * 109.47280 * 54.82574 * 8 7 6 37 37 H 1.09001 * 109.47323 * 300.00003 * 9 8 7 38 38 H 1.09006 * 109.46850 * 60.00398 * 9 8 7 39 39 H 0.96995 * 120.00138 * 180.02562 * 13 12 10 40 40 H 1.09005 * 109.79995 * 30.75246 * 18 6 5 41 41 H 1.08999 * 109.80093 * 151.62277 * 18 6 5 42 42 H 1.09001 * 109.24220 * 336.92477 * 19 18 6 43 43 H 1.08997 * 109.20656 * 217.50707 * 19 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0296 1.4462 0.0000 4 6 2.0244 -0.6940 1.2463 5 6 3.3075 0.0043 1.7349 6 7 4.4477 -0.4468 1.0862 7 6 5.6613 0.0008 1.7824 8 6 5.8665 -0.8419 3.0428 9 6 7.1963 -0.4638 3.6982 10 6 7.3981 -1.2935 4.9400 11 1 6.6527 -2.0182 5.2323 12 6 8.5344 -1.1272 5.7030 13 7 8.7104 -1.8508 6.7870 14 14 9.8234 0.1269 5.1979 15 1 9.5117 1.4369 5.8240 16 1 11.1625 -0.3307 5.6481 17 1 9.8208 0.2716 3.7200 18 6 4.5187 -0.1349 -0.3537 19 6 3.8518 -1.2646 -1.1035 20 16 2.1277 -0.8388 -1.5061 21 8 1.3953 -2.0461 -1.6651 22 8 2.1383 0.1051 -2.5682 23 1 -0.3634 0.5276 0.8819 24 1 -0.3634 0.5000 -0.8979 25 1 -0.3633 -1.0275 0.0159 26 1 3.0977 1.4616 0.2169 27 1 1.8510 1.8922 -0.9783 28 1 1.4960 2.0149 0.7615 29 1 2.2409 -1.7381 1.0207 30 1 1.2609 -0.6380 2.0222 31 1 3.4185 -0.1732 2.8046 32 1 3.2082 1.0765 1.5657 33 1 5.5552 1.0495 2.0598 34 1 6.5219 -0.1154 1.1235 35 1 5.0510 -0.6552 3.7415 36 1 5.8808 -1.8984 2.7752 37 1 8.0118 -0.6506 2.9995 38 1 7.1819 0.5927 3.9660 39 1 9.5096 -1.7336 7.3240 40 1 3.9968 0.8007 -0.5550 41 1 5.5607 -0.0511 -0.6625 42 1 3.8652 -2.1628 -0.4860 43 1 4.3996 -1.4551 -2.0264 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194976048.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:08:19 Heat of formation + Delta-G solvation = -68.293352 kcal Electronic energy + Delta-G solvation = -22377.587702 eV Core-core repulsion = 19164.225749 eV Total energy + Delta-G solvation = -3213.361953 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.150 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.98615 -38.11493 -37.30885 -37.07590 -35.63876 -33.93129 -32.37727 -30.38781 -28.73884 -28.08635 -25.01603 -24.39679 -23.06749 -21.82289 -21.05492 -19.34696 -18.87947 -18.05779 -17.82745 -17.15511 -16.73398 -16.36718 -16.06583 -15.78277 -15.56089 -14.88320 -14.68692 -14.43729 -14.14670 -14.07841 -13.68426 -13.58647 -13.50764 -13.27442 -13.16155 -13.08948 -12.82755 -12.65953 -12.58042 -12.26689 -12.22293 -12.01278 -11.88079 -11.73700 -11.45746 -11.30737 -11.27378 -11.18639 -10.78543 -10.72187 -8.99422 -8.26433 -6.30457 -1.01217 1.38260 1.40697 1.52391 1.69967 2.38974 2.62031 2.77229 3.05570 3.09467 3.43044 3.48593 3.78215 3.90364 3.93761 4.03919 4.17905 4.30723 4.33458 4.48880 4.55951 4.59036 4.63197 4.71141 4.77940 4.82952 4.86076 4.89429 5.01925 5.02640 5.05820 5.12369 5.14359 5.23463 5.29588 5.60257 5.67921 5.71887 6.12822 6.33854 6.53295 6.79047 7.34291 8.90722 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.033701 B = 0.003466 C = 0.003401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 830.644934 B = 8077.694747 C = 8231.478183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.505 4.505 3 C -0.168 4.168 4 C -0.095 4.095 5 C 0.038 3.962 6 N -0.567 5.567 7 C 0.070 3.930 8 C -0.090 4.090 9 C -0.012 4.012 10 C -0.531 4.531 11 H 0.027 0.973 12 C -0.001 4.001 13 N -0.956 5.956 14 Si 0.954 3.046 15 H -0.266 1.266 16 H -0.288 1.288 17 H -0.242 1.242 18 C 0.055 3.945 19 C -0.584 4.584 20 S 2.393 3.607 21 O -0.981 6.981 22 O -0.971 6.971 23 H 0.102 0.898 24 H 0.066 0.934 25 H 0.072 0.928 26 H 0.098 0.902 27 H 0.076 0.924 28 H 0.097 0.903 29 H 0.075 0.925 30 H 0.107 0.893 31 H 0.075 0.925 32 H 0.067 0.933 33 H 0.049 0.951 34 H 0.082 0.918 35 H 0.046 0.954 36 H 0.047 0.953 37 H 0.021 0.979 38 H 0.020 0.980 39 H 0.265 0.735 40 H 0.085 0.915 41 H 0.109 0.891 42 H 0.150 0.850 43 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.945 8.647 -17.083 23.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.598 4.598 3 C -0.225 4.225 4 C -0.134 4.134 5 C -0.090 4.090 6 N -0.291 5.291 7 C -0.057 4.057 8 C -0.128 4.128 9 C -0.049 4.049 10 C -0.569 4.569 11 H 0.046 0.954 12 C -0.197 4.197 13 N -0.597 5.597 14 Si 0.777 3.223 15 H -0.191 1.191 16 H -0.214 1.214 17 H -0.165 1.165 18 C -0.072 4.072 19 C -0.717 4.717 20 S 2.580 3.420 21 O -0.978 6.978 22 O -0.969 6.969 23 H 0.120 0.880 24 H 0.085 0.915 25 H 0.091 0.909 26 H 0.116 0.884 27 H 0.095 0.905 28 H 0.116 0.884 29 H 0.094 0.906 30 H 0.125 0.875 31 H 0.094 0.906 32 H 0.084 0.916 33 H 0.067 0.933 34 H 0.100 0.900 35 H 0.065 0.935 36 H 0.065 0.935 37 H 0.039 0.961 38 H 0.038 0.962 39 H 0.074 0.926 40 H 0.102 0.898 41 H 0.127 0.873 42 H 0.168 0.832 43 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -14.362 7.978 -17.743 24.181 hybrid contribution 0.974 0.617 1.010 1.533 sum -13.388 8.595 -16.733 23.089 Atomic orbital electron populations 1.21884 0.88674 1.04184 1.05108 1.29257 1.06884 1.08509 1.15130 1.22624 1.03642 0.91118 1.05091 1.21428 0.97761 0.98882 0.95330 1.21211 0.88912 0.99382 0.99539 1.58058 1.03156 1.65735 1.02198 1.22151 0.91301 0.97049 0.95171 1.21327 0.96737 0.99355 0.95429 1.19512 0.95443 0.95792 0.94201 1.21554 1.05061 1.21195 1.09138 0.95448 1.26093 1.00783 0.98245 0.94559 1.70085 1.29121 1.43093 1.17391 0.85602 0.77379 0.78867 0.80422 1.19137 1.21431 1.16483 1.22034 1.03998 0.94708 0.86444 1.30046 1.19872 1.10197 1.11545 1.09044 0.79293 0.75247 0.78374 1.93507 1.71200 1.46902 1.86218 1.93508 1.87128 1.63737 1.52492 0.87957 0.91463 0.90939 0.88405 0.90537 0.88425 0.90635 0.87467 0.90635 0.91578 0.93278 0.89960 0.93501 0.93453 0.96066 0.96156 0.92634 0.89809 0.87287 0.83217 0.82853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.87 7.96 71.98 0.57 -1.30 16 2 C -0.50 -7.51 0.80 -11.45 -0.01 -7.52 16 3 C -0.17 -2.06 6.45 71.98 0.46 -1.60 16 4 C -0.10 -1.47 5.04 30.29 0.15 -1.32 16 5 C 0.04 0.69 4.58 88.11 0.40 1.09 16 6 N -0.57 -11.51 3.74 -916.29 -3.43 -14.93 16 7 C 0.07 1.73 5.01 86.30 0.43 2.16 16 8 C -0.09 -3.19 5.15 30.59 0.16 -3.03 16 9 C -0.01 -0.51 4.04 29.85 0.12 -0.39 16 10 C -0.53 -30.18 9.66 25.60 0.25 -29.93 16 11 H 0.03 1.73 7.99 -2.92 -0.02 1.71 16 12 C 0.00 -0.04 5.47 84.66 0.46 0.42 16 13 N -0.96 -59.94 13.96 21.45 0.30 -59.64 16 14 Si 0.95 43.15 27.47 68.60 1.88 45.03 16 15 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 16 H -0.29 -12.96 7.11 99.48 0.71 -12.25 16 17 H -0.24 -9.90 6.54 99.48 0.65 -9.24 16 18 C 0.06 0.87 5.37 85.57 0.46 1.33 16 19 C -0.58 -9.39 5.75 71.36 0.41 -8.98 16 20 S 2.39 47.51 4.29 -56.49 -0.24 47.27 16 21 O -0.98 -26.55 17.64 -127.34 -2.25 -28.80 16 22 O -0.97 -24.05 16.96 -127.34 -2.16 -26.21 16 23 H 0.10 0.95 8.09 -2.38 -0.02 0.93 16 24 H 0.07 0.87 8.14 -2.38 -0.02 0.85 16 25 H 0.07 1.05 7.94 -2.39 -0.02 1.03 16 26 H 0.10 1.14 2.73 -2.39 -0.01 1.13 16 27 H 0.08 1.00 7.23 -2.39 -0.02 0.98 16 28 H 0.10 0.92 8.07 -2.39 -0.02 0.90 16 29 H 0.08 1.27 7.13 -2.39 -0.02 1.26 16 30 H 0.11 1.37 7.68 -2.39 -0.02 1.35 16 31 H 0.08 1.61 6.38 -2.39 -0.02 1.60 16 32 H 0.07 0.96 4.70 -2.39 -0.01 0.95 16 33 H 0.05 1.11 7.97 -2.39 -0.02 1.09 16 34 H 0.08 1.91 7.36 -2.38 -0.02 1.89 16 35 H 0.05 1.68 6.84 -2.39 -0.02 1.67 16 36 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 37 H 0.02 0.91 7.20 -2.39 -0.02 0.89 16 38 H 0.02 0.85 7.57 -2.38 -0.02 0.83 16 39 H 0.26 15.48 8.31 -92.71 -0.77 14.71 16 40 H 0.08 1.07 4.01 -2.38 -0.01 1.06 16 41 H 0.11 1.50 7.28 -2.39 -0.02 1.48 16 42 H 0.15 2.52 7.49 -2.39 -0.02 2.51 16 43 H 0.15 1.88 8.14 -2.39 -0.02 1.86 16 Total: -1.00 -75.11 326.51 -1.08 -76.18 By element: Atomic # 1 Polarization: 9.20 SS G_CDS: 0.94 Total: 10.14 kcal Atomic # 6 Polarization: -52.93 SS G_CDS: 3.88 Total: -49.05 kcal Atomic # 7 Polarization: -71.44 SS G_CDS: -3.13 Total: -74.57 kcal Atomic # 8 Polarization: -50.60 SS G_CDS: -4.40 Total: -55.00 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 1.88 Total: 45.03 kcal Atomic # 16 Polarization: 47.51 SS G_CDS: -0.24 Total: 47.27 kcal Total: -75.11 -1.08 -76.18 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194976048.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.889 kcal (2) G-P(sol) polarization free energy of solvation -75.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.183 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds