Wall clock time and date at job start Tue Mar 31 2020 06:55:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.37706 * 119.95383 * 2 1 4 4 C 1.39778 * 119.90555 * 180.02562 * 3 2 1 5 5 C 1.47496 * 120.09344 * 179.97438 * 4 3 2 6 6 O 1.21612 * 119.99940 * 29.10658 * 5 4 3 7 7 N 1.34783 * 119.99727 * 209.10614 * 5 4 3 8 8 C 1.36900 * 120.00400 * 5.16065 * 7 5 4 9 9 H 1.07996 * 120.00122 * 231.10609 * 8 7 5 10 10 C 1.39016 * 119.99656 * 51.10268 * 8 7 5 11 11 N 1.31386 * 120.00439 * 11.06810 * 10 8 7 12 12 Si 1.86807 * 119.99910 * 191.06688 * 10 8 7 13 13 H 1.48506 * 109.47010 * 90.00007 * 12 10 8 14 14 H 1.48498 * 109.46941 * 210.00006 * 12 10 8 15 15 H 1.48500 * 109.47195 * 330.00200 * 12 10 8 16 16 C 1.46503 * 119.99629 * 185.16830 * 7 5 4 17 17 C 1.54263 * 110.02786 * 233.75151 * 16 7 5 18 18 C 1.54970 * 104.15819 * 217.13326 * 17 16 7 19 19 C 1.54882 * 102.77514 * 37.88883 * 18 17 16 20 20 C 1.53865 * 110.03494 * 116.53134 * 16 7 5 21 21 C 1.39819 * 119.81188 * 359.71119 * 4 3 2 22 22 C 1.37671 * 119.90381 * 0.54147 * 21 4 3 23 23 C 1.38995 * 119.95193 * 179.97438 * 2 1 3 24 24 O 1.35712 * 119.90464 * 359.97438 * 23 2 1 25 25 H 1.09003 * 109.46851 * 270.02229 * 1 2 3 26 26 H 1.08999 * 109.47066 * 30.02019 * 1 2 3 27 27 H 1.09000 * 109.47578 * 150.02117 * 1 2 3 28 28 H 1.08001 * 120.04756 * 359.97438 * 3 2 1 29 29 H 0.97003 * 120.00142 * 184.96799 * 11 10 8 30 30 H 1.09003 * 110.01686 * 355.13991 * 16 7 5 31 31 H 1.09000 * 110.49086 * 335.77850 * 17 16 7 32 32 H 1.09005 * 110.48714 * 98.42871 * 17 16 7 33 33 H 1.08998 * 110.71695 * 279.57378 * 18 17 16 34 34 H 1.09004 * 110.92092 * 156.29437 * 18 17 16 35 35 H 1.09001 * 110.49050 * 203.40347 * 19 18 17 36 36 H 1.09002 * 110.59992 * 80.81458 * 19 18 17 37 37 H 1.08996 * 110.03776 * 238.56454 * 20 16 7 38 38 H 1.09006 * 110.03542 * 359.95434 * 20 16 7 39 39 H 1.08004 * 120.05141 * 180.31846 * 21 4 3 40 40 H 1.07999 * 119.94898 * 179.75250 * 22 21 4 41 41 H 0.96705 * 113.99841 * 270.02308 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1945 1.1931 0.0000 4 6 3.5923 1.1919 -0.0005 5 6 4.3329 2.4675 -0.0011 6 8 3.8427 3.4555 0.5112 7 7 5.5531 2.5380 -0.5694 8 6 6.0603 1.4564 -1.2381 9 1 7.0501 1.0928 -1.0047 10 6 5.3013 0.8262 -2.2175 11 7 4.1974 1.3878 -2.6559 12 14 5.8509 -0.8193 -2.9103 13 1 5.2651 -1.9178 -2.1007 14 1 5.3918 -0.9421 -4.3172 15 1 7.3326 -0.9060 -2.8637 16 6 6.3365 3.7720 -0.4714 17 6 6.7662 4.2381 -1.8777 18 6 8.1930 4.8061 -1.6693 19 6 8.8012 3.8315 -0.6305 20 6 7.6296 3.5139 0.3216 21 6 4.2864 -0.0218 0.0050 22 6 3.5912 -1.2100 -0.0002 23 6 2.2009 -1.2043 0.0005 24 8 1.5194 -2.3779 0.0016 25 1 -0.3633 0.0004 1.0277 26 1 -0.3633 0.8898 -0.5141 27 1 -0.3634 -0.8901 -0.5135 28 1 1.6545 2.1285 -0.0004 29 1 3.6302 0.9160 -3.2857 30 1 5.7485 4.5496 0.0163 31 1 6.7884 3.3955 -2.5687 32 1 6.0952 5.0153 -2.2436 33 1 8.1501 5.8193 -1.2697 34 1 8.7608 4.7829 -2.5995 35 1 9.6148 4.3121 -0.0872 36 1 9.1538 2.9225 -1.1179 37 1 7.6697 4.1667 1.1935 38 1 7.6740 2.4706 0.6342 39 1 5.3664 -0.0272 0.0098 40 1 4.1266 -2.1480 0.0000 41 1 1.3220 -2.7173 0.8854 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000226997805.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:09 Heat of formation + Delta-G solvation = -54.372452 kcal Electronic energy + Delta-G solvation = -24153.626667 eV Core-core repulsion = 20805.424419 eV Total energy + Delta-G solvation = -3348.202249 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.64098 -38.57316 -36.83224 -35.59748 -34.28868 -31.95999 -31.35838 -29.33294 -27.99376 -27.21038 -25.94760 -24.94434 -22.58768 -21.09918 -20.06580 -19.63442 -19.33524 -17.77520 -16.86057 -15.91662 -15.32544 -15.09024 -14.98037 -14.50368 -14.42314 -13.92484 -13.39135 -13.23012 -12.95830 -12.68852 -12.63214 -12.47513 -12.01521 -11.72018 -11.51060 -11.29954 -11.20920 -11.12669 -10.86085 -10.62522 -10.56530 -10.51572 -10.39931 -10.38724 -10.04301 -9.79177 -9.68892 -8.97521 -8.53601 -8.01080 -7.57622 -7.24248 -6.38374 -4.19689 1.78967 2.19221 3.13136 3.19702 3.24394 3.88193 4.06930 4.59484 4.72609 4.90291 5.04560 5.32269 5.37026 5.46194 5.50386 5.58044 5.83174 5.96354 6.04665 6.11289 6.19461 6.23205 6.28064 6.29556 6.34337 6.37184 6.42048 6.48376 6.50496 6.59414 6.68290 6.83747 6.86959 7.03684 7.15114 7.17434 7.26628 7.40135 7.47172 7.58394 7.91682 8.15512 8.61612 8.90244 9.54384 9.96852 10.64190 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.019649 B = 0.006572 C = 0.005561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1424.655140 B = 4259.694068 C = 5033.410605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.136 4.136 3 C -0.060 4.060 4 C -0.053 4.053 5 C 0.554 3.446 6 O -0.607 6.607 7 N -0.441 5.441 8 C -0.352 4.352 9 H 0.085 0.915 10 C 0.063 3.937 11 N -0.843 5.843 12 Si 0.892 3.108 13 H -0.262 1.262 14 H -0.284 1.284 15 H -0.269 1.269 16 C 0.133 3.867 17 C -0.120 4.120 18 C -0.123 4.123 19 C -0.116 4.116 20 C -0.128 4.128 21 C -0.053 4.053 22 C -0.168 4.168 23 C 0.094 3.906 24 O -0.501 6.501 25 H 0.059 0.941 26 H 0.061 0.939 27 H 0.064 0.936 28 H 0.120 0.880 29 H 0.272 0.728 30 H 0.079 0.921 31 H 0.089 0.911 32 H 0.051 0.949 33 H 0.056 0.944 34 H 0.057 0.943 35 H 0.052 0.948 36 H 0.064 0.936 37 H 0.053 0.947 38 H 0.070 0.930 39 H 0.154 0.846 40 H 0.116 0.884 41 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.293 -2.823 4.049 5.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.136 4.136 3 C -0.079 4.079 4 C -0.056 4.056 5 C 0.345 3.655 6 O -0.493 6.493 7 N -0.160 5.160 8 C -0.480 4.480 9 H 0.102 0.898 10 C -0.147 4.147 11 N -0.476 5.476 12 Si 0.717 3.283 13 H -0.187 1.187 14 H -0.209 1.209 15 H -0.194 1.194 16 C 0.029 3.971 17 C -0.159 4.159 18 C -0.161 4.161 19 C -0.154 4.154 20 C -0.166 4.166 21 C -0.071 4.071 22 C -0.187 4.187 23 C 0.050 3.950 24 O -0.310 6.310 25 H 0.077 0.923 26 H 0.080 0.920 27 H 0.083 0.917 28 H 0.138 0.862 29 H 0.083 0.917 30 H 0.097 0.903 31 H 0.107 0.893 32 H 0.070 0.930 33 H 0.075 0.925 34 H 0.076 0.924 35 H 0.071 0.929 36 H 0.083 0.917 37 H 0.072 0.928 38 H 0.089 0.911 39 H 0.172 0.828 40 H 0.134 0.866 41 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges 0.984 -2.249 3.473 4.253 hybrid contribution 0.132 -1.001 -0.351 1.069 sum 1.116 -3.250 3.122 4.643 Atomic orbital electron populations 1.20559 0.91599 1.02411 1.01278 1.19853 0.95877 0.92478 1.05405 1.20803 0.93256 0.96646 0.97172 1.19655 0.92848 0.93999 0.99135 1.18115 0.82375 0.87100 0.77941 1.90585 1.69650 1.37920 1.51149 1.43179 1.14900 1.10763 1.47113 1.19015 1.03776 1.07643 1.17518 0.89768 1.25526 0.96235 0.98922 0.94041 1.69830 1.12810 1.35883 1.29045 0.86526 0.79211 0.83548 0.79020 1.18689 1.20930 1.19350 1.21576 0.91644 0.88795 0.95057 1.22575 0.94186 1.00701 0.98395 1.22452 0.97105 0.98129 0.98387 1.22256 0.97010 0.99118 0.97020 1.22435 0.94893 1.01752 0.97550 1.21866 1.01969 0.90321 0.92934 1.21273 0.93026 0.98731 1.05624 1.18363 0.89763 0.84149 1.02751 1.84741 1.76610 1.37044 1.32604 0.92259 0.91978 0.91661 0.86178 0.91731 0.90331 0.89252 0.93023 0.92504 0.92401 0.92938 0.91700 0.92832 0.91141 0.82830 0.86558 0.76829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.56 9.78 36.00 0.35 -1.21 16 2 C -0.14 -2.60 5.89 -104.54 -0.62 -3.21 16 3 C -0.06 -1.31 9.23 -39.20 -0.36 -1.67 16 4 C -0.05 -1.26 3.88 -104.96 -0.41 -1.66 16 5 C 0.55 14.20 6.72 -12.49 -0.08 14.12 16 6 O -0.61 -16.79 16.05 5.27 0.08 -16.70 16 7 N -0.44 -10.54 2.37 -107.73 -0.26 -10.80 16 8 C -0.35 -8.24 4.63 -15.00 -0.07 -8.31 16 9 H 0.08 1.91 7.41 -52.49 -0.39 1.52 16 10 C 0.06 1.51 3.05 -17.45 -0.05 1.46 16 11 N -0.84 -21.95 11.55 55.50 0.64 -21.30 16 12 Si 0.89 19.06 28.00 -169.99 -4.76 14.30 16 13 H -0.26 -5.48 6.60 56.52 0.37 -5.10 16 14 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 15 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 16 C 0.13 2.85 3.29 -66.82 -0.22 2.63 16 17 C -0.12 -2.39 6.40 -25.03 -0.16 -2.55 16 18 C -0.12 -1.94 6.91 -24.70 -0.17 -2.11 16 19 C -0.12 -1.81 6.83 -25.07 -0.17 -1.98 16 20 C -0.13 -2.29 6.28 -25.62 -0.16 -2.45 16 21 C -0.05 -1.13 6.06 -39.20 -0.24 -1.37 16 22 C -0.17 -3.30 9.22 -39.50 -0.36 -3.66 16 23 C 0.09 1.77 6.68 -39.01 -0.26 1.50 16 24 O -0.50 -7.98 12.52 -18.84 -0.24 -8.21 16 25 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 26 H 0.06 0.93 8.08 -51.93 -0.42 0.51 16 27 H 0.06 0.96 7.52 -51.93 -0.39 0.57 16 28 H 0.12 2.66 7.91 -52.49 -0.41 2.24 16 29 H 0.27 7.01 8.32 -40.82 -0.34 6.67 16 30 H 0.08 1.80 6.95 -51.93 -0.36 1.44 16 31 H 0.09 1.99 6.87 -51.93 -0.36 1.63 16 32 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 34 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 37 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.07 1.32 7.21 -51.93 -0.37 0.94 16 39 H 0.15 3.31 5.20 -52.48 -0.27 3.03 16 40 H 0.12 2.08 8.06 -52.49 -0.42 1.66 16 41 H 0.38 4.01 9.06 45.56 0.41 4.43 16 LS Contribution 325.73 15.07 4.91 4.91 Total: -1.00 -29.00 325.73 -7.71 -36.71 By element: Atomic # 1 Polarization: 16.70 SS G_CDS: -5.11 Total: 11.59 kcal Atomic # 6 Polarization: -7.50 SS G_CDS: -2.98 Total: -10.48 kcal Atomic # 7 Polarization: -32.49 SS G_CDS: 0.39 Total: -32.10 kcal Atomic # 8 Polarization: -24.77 SS G_CDS: -0.15 Total: -24.92 kcal Atomic # 14 Polarization: 19.06 SS G_CDS: -4.76 Total: 14.30 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -29.00 -7.71 -36.71 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226997805.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.664 kcal (2) G-P(sol) polarization free energy of solvation -28.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.709 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds