Wall clock time and date at job start Tue Mar 31 2020 06:55:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.37706 * 119.95383 * 2 1 4 4 C 1.39778 * 119.90555 * 180.02562 * 3 2 1 5 5 C 1.47496 * 120.09344 * 179.97438 * 4 3 2 6 6 O 1.21612 * 119.99940 * 29.10658 * 5 4 3 7 7 N 1.34783 * 119.99727 * 209.10614 * 5 4 3 8 8 C 1.36900 * 120.00400 * 5.16065 * 7 5 4 9 9 H 1.07996 * 120.00122 * 231.10609 * 8 7 5 10 10 C 1.39016 * 119.99656 * 51.10268 * 8 7 5 11 11 N 1.31386 * 120.00439 * 11.06810 * 10 8 7 12 12 Si 1.86807 * 119.99910 * 191.06688 * 10 8 7 13 13 H 1.48506 * 109.47010 * 90.00007 * 12 10 8 14 14 H 1.48498 * 109.46941 * 210.00006 * 12 10 8 15 15 H 1.48500 * 109.47195 * 330.00200 * 12 10 8 16 16 C 1.46503 * 119.99629 * 185.16830 * 7 5 4 17 17 C 1.54263 * 110.02786 * 233.75151 * 16 7 5 18 18 C 1.54970 * 104.15819 * 217.13326 * 17 16 7 19 19 C 1.54882 * 102.77514 * 37.88883 * 18 17 16 20 20 C 1.53865 * 110.03494 * 116.53134 * 16 7 5 21 21 C 1.39819 * 119.81188 * 359.71119 * 4 3 2 22 22 C 1.37671 * 119.90381 * 0.54147 * 21 4 3 23 23 C 1.38995 * 119.95193 * 179.97438 * 2 1 3 24 24 O 1.35712 * 119.90464 * 359.97438 * 23 2 1 25 25 H 1.09003 * 109.46851 * 270.02229 * 1 2 3 26 26 H 1.08999 * 109.47066 * 30.02019 * 1 2 3 27 27 H 1.09000 * 109.47578 * 150.02117 * 1 2 3 28 28 H 1.08001 * 120.04756 * 359.97438 * 3 2 1 29 29 H 0.97003 * 120.00142 * 184.96799 * 11 10 8 30 30 H 1.09003 * 110.01686 * 355.13991 * 16 7 5 31 31 H 1.09000 * 110.49086 * 335.77850 * 17 16 7 32 32 H 1.09005 * 110.48714 * 98.42871 * 17 16 7 33 33 H 1.08998 * 110.71695 * 279.57378 * 18 17 16 34 34 H 1.09004 * 110.92092 * 156.29437 * 18 17 16 35 35 H 1.09001 * 110.49050 * 203.40347 * 19 18 17 36 36 H 1.09002 * 110.59992 * 80.81458 * 19 18 17 37 37 H 1.08996 * 110.03776 * 238.56454 * 20 16 7 38 38 H 1.09006 * 110.03542 * 359.95434 * 20 16 7 39 39 H 1.08004 * 120.05141 * 180.31846 * 21 4 3 40 40 H 1.07999 * 119.94898 * 179.75250 * 22 21 4 41 41 H 0.96705 * 113.99841 * 270.02308 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1945 1.1931 0.0000 4 6 3.5923 1.1919 -0.0005 5 6 4.3329 2.4675 -0.0011 6 8 3.8427 3.4555 0.5112 7 7 5.5531 2.5380 -0.5694 8 6 6.0603 1.4564 -1.2381 9 1 7.0501 1.0928 -1.0047 10 6 5.3013 0.8262 -2.2175 11 7 4.1974 1.3878 -2.6559 12 14 5.8509 -0.8193 -2.9103 13 1 5.2651 -1.9178 -2.1007 14 1 5.3918 -0.9421 -4.3172 15 1 7.3326 -0.9060 -2.8637 16 6 6.3365 3.7720 -0.4714 17 6 6.7662 4.2381 -1.8777 18 6 8.1930 4.8061 -1.6693 19 6 8.8012 3.8315 -0.6305 20 6 7.6296 3.5139 0.3216 21 6 4.2864 -0.0218 0.0050 22 6 3.5912 -1.2100 -0.0002 23 6 2.2009 -1.2043 0.0005 24 8 1.5194 -2.3779 0.0016 25 1 -0.3633 0.0004 1.0277 26 1 -0.3633 0.8898 -0.5141 27 1 -0.3634 -0.8901 -0.5135 28 1 1.6545 2.1285 -0.0004 29 1 3.6302 0.9160 -3.2857 30 1 5.7485 4.5496 0.0163 31 1 6.7884 3.3955 -2.5687 32 1 6.0952 5.0153 -2.2436 33 1 8.1501 5.8193 -1.2697 34 1 8.7608 4.7829 -2.5995 35 1 9.6148 4.3121 -0.0872 36 1 9.1538 2.9225 -1.1179 37 1 7.6697 4.1667 1.1935 38 1 7.6740 2.4706 0.6342 39 1 5.3664 -0.0272 0.0098 40 1 4.1266 -2.1480 0.0000 41 1 1.3220 -2.7173 0.8854 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000226997805.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:09 Heat of formation + Delta-G solvation = -72.018816 kcal Electronic energy + Delta-G solvation = -24154.391871 eV Core-core repulsion = 20805.424419 eV Total energy + Delta-G solvation = -3348.967452 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.33872 -40.14471 -38.41226 -37.19910 -36.03921 -33.46849 -33.17535 -30.93753 -29.46826 -28.77208 -27.39250 -26.80456 -24.21030 -22.67077 -21.55228 -21.27490 -21.00922 -19.18859 -18.61182 -17.63365 -17.10953 -16.68169 -16.43798 -16.19832 -15.91065 -15.50767 -15.07617 -14.92472 -14.45983 -14.22693 -14.11064 -13.98508 -13.52082 -13.38067 -13.04742 -12.95347 -12.81235 -12.68779 -12.49375 -12.24769 -12.19112 -12.03890 -11.88146 -11.82952 -11.42070 -11.33431 -11.25421 -10.77506 -10.44950 -9.61999 -9.33350 -8.97719 -8.24382 -6.09828 0.18512 0.59262 1.43938 1.47267 1.54140 2.11583 2.32061 2.87879 3.09467 3.24268 3.40927 3.86412 3.92133 4.05136 4.06056 4.16679 4.34001 4.48762 4.61165 4.69340 4.72236 4.78629 4.82340 4.82713 4.87046 4.92594 4.96510 5.07233 5.10261 5.15904 5.25218 5.35368 5.39229 5.47583 5.53947 5.57264 5.61760 5.63669 5.82674 6.02655 6.09882 6.71360 6.94464 7.04031 7.63359 8.08451 8.77530 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.019649 B = 0.006572 C = 0.005561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1424.655140 B = 4259.694068 C = 5033.410605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C -0.136 4.136 3 C -0.077 4.077 4 C -0.081 4.081 5 C 0.533 3.467 6 O -0.647 6.647 7 N -0.443 5.443 8 C -0.348 4.348 9 H 0.094 0.906 10 C 0.036 3.964 11 N -0.877 5.877 12 Si 0.940 3.060 13 H -0.249 1.249 14 H -0.298 1.298 15 H -0.254 1.254 16 C 0.120 3.880 17 C -0.118 4.118 18 C -0.111 4.111 19 C -0.107 4.107 20 C -0.121 4.121 21 C -0.058 4.058 22 C -0.170 4.170 23 C 0.108 3.892 24 O -0.499 6.499 25 H 0.084 0.916 26 H 0.060 0.940 27 H 0.077 0.923 28 H 0.103 0.897 29 H 0.265 0.735 30 H 0.053 0.947 31 H 0.062 0.938 32 H 0.037 0.963 33 H 0.074 0.926 34 H 0.076 0.924 35 H 0.085 0.915 36 H 0.063 0.937 37 H 0.067 0.933 38 H 0.060 0.940 39 H 0.149 0.851 40 H 0.139 0.861 41 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.375 -4.763 4.304 6.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.137 4.137 3 C -0.097 4.097 4 C -0.084 4.084 5 C 0.325 3.675 6 O -0.537 6.537 7 N -0.160 5.160 8 C -0.475 4.475 9 H 0.111 0.889 10 C -0.171 4.171 11 N -0.511 5.511 12 Si 0.763 3.237 13 H -0.174 1.174 14 H -0.225 1.225 15 H -0.178 1.178 16 C 0.016 3.984 17 C -0.156 4.156 18 C -0.149 4.149 19 C -0.145 4.145 20 C -0.160 4.160 21 C -0.076 4.076 22 C -0.188 4.188 23 C 0.063 3.937 24 O -0.311 6.311 25 H 0.103 0.897 26 H 0.079 0.921 27 H 0.096 0.904 28 H 0.121 0.879 29 H 0.075 0.925 30 H 0.071 0.929 31 H 0.081 0.919 32 H 0.056 0.944 33 H 0.092 0.908 34 H 0.095 0.905 35 H 0.104 0.896 36 H 0.082 0.918 37 H 0.085 0.915 38 H 0.079 0.921 39 H 0.167 0.833 40 H 0.157 0.843 41 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges 2.103 -4.208 3.753 6.018 hybrid contribution -0.280 -0.417 -0.398 0.641 sum 1.823 -4.625 3.355 5.998 Atomic orbital electron populations 1.20607 0.88809 1.02908 1.03079 1.20189 0.97906 0.91614 1.03955 1.20818 0.92983 0.97310 0.98556 1.19638 0.93503 0.93707 1.01569 1.18684 0.83124 0.87763 0.77915 1.90525 1.70640 1.39393 1.53093 1.43408 1.14674 1.11696 1.46198 1.19201 1.03827 1.07557 1.16944 0.88859 1.26077 0.95808 1.01221 0.93964 1.69976 1.14147 1.37077 1.29896 0.85778 0.79694 0.80692 0.77526 1.17362 1.22465 1.17799 1.21834 0.92645 0.87471 0.96465 1.22486 0.97034 0.99454 0.96618 1.22420 0.93999 0.98835 0.99636 1.22232 0.96651 0.99253 0.96363 1.22368 0.93930 1.01493 0.98172 1.21745 1.01734 0.90402 0.93708 1.21499 0.93706 0.98711 1.04897 1.18343 0.89609 0.84934 1.00774 1.84669 1.75964 1.35461 1.35040 0.89709 0.92145 0.90448 0.87855 0.92508 0.92915 0.91882 0.94413 0.90767 0.90496 0.89598 0.91824 0.91463 0.92115 0.83319 0.84342 0.73510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.80 9.78 71.23 0.70 -2.10 16 2 C -0.14 -5.08 5.89 -19.81 -0.12 -5.20 16 3 C -0.08 -3.49 9.23 22.52 0.21 -3.28 16 4 C -0.08 -3.95 3.88 -20.08 -0.08 -4.03 16 5 C 0.53 28.78 6.72 86.68 0.58 29.36 16 6 O -0.65 -38.17 16.05 -4.07 -0.07 -38.24 16 7 N -0.44 -21.97 2.37 -613.00 -1.45 -23.42 16 8 C -0.35 -16.50 4.63 84.09 0.39 -16.11 16 9 H 0.09 4.20 7.41 -2.91 -0.02 4.18 16 10 C 0.04 1.74 3.05 84.95 0.26 2.00 16 11 N -0.88 -46.95 11.55 21.68 0.25 -46.70 16 12 Si 0.94 38.34 28.00 68.60 1.92 40.26 16 13 H -0.25 -9.62 6.60 99.48 0.66 -8.96 16 14 H -0.30 -12.85 7.11 99.48 0.71 -12.14 16 15 H -0.25 -9.71 7.11 99.48 0.71 -9.00 16 16 C 0.12 5.26 3.29 45.71 0.15 5.41 16 17 C -0.12 -4.75 6.40 31.70 0.20 -4.55 16 18 C -0.11 -3.29 6.91 31.91 0.22 -3.07 16 19 C -0.11 -3.05 6.83 31.67 0.22 -2.84 16 20 C -0.12 -4.25 6.28 31.32 0.20 -4.06 16 21 C -0.06 -2.47 6.06 22.52 0.14 -2.34 16 22 C -0.17 -6.34 9.22 22.32 0.21 -6.13 16 23 C 0.11 3.81 6.68 22.64 0.15 3.96 16 24 O -0.50 -13.92 12.52 -90.33 -1.13 -15.05 16 25 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 26 H 0.06 1.75 8.08 -2.39 -0.02 1.73 16 27 H 0.08 2.04 7.52 -2.39 -0.02 2.02 16 28 H 0.10 4.88 7.91 -2.91 -0.02 4.85 16 29 H 0.27 14.04 8.32 -92.71 -0.77 13.27 16 30 H 0.05 2.56 6.95 -2.39 -0.02 2.54 16 31 H 0.06 2.87 6.87 -2.39 -0.02 2.86 16 32 H 0.04 1.57 8.14 -2.38 -0.02 1.55 16 33 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 34 H 0.08 2.02 8.14 -2.38 -0.02 2.00 16 35 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 36 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 37 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 38 H 0.06 2.24 7.21 -2.38 -0.02 2.22 16 39 H 0.15 6.40 5.20 -2.91 -0.02 6.39 16 40 H 0.14 4.50 8.06 -2.91 -0.02 4.48 16 41 H 0.41 6.78 9.06 -74.05 -0.67 6.11 16 Total: -1.00 -65.48 325.73 3.27 -62.21 By element: Atomic # 1 Polarization: 33.59 SS G_CDS: 0.32 Total: 33.91 kcal Atomic # 6 Polarization: -16.39 SS G_CDS: 3.42 Total: -12.97 kcal Atomic # 7 Polarization: -68.92 SS G_CDS: -1.20 Total: -70.12 kcal Atomic # 8 Polarization: -52.09 SS G_CDS: -1.20 Total: -53.29 kcal Atomic # 14 Polarization: 38.34 SS G_CDS: 1.92 Total: 40.26 kcal Total: -65.48 3.27 -62.21 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226997805.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.809 kcal (2) G-P(sol) polarization free energy of solvation -65.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds