Wall clock time and date at job start Tue Mar 31 2020 06:35:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38289 * 119.92670 * 2 1 4 4 C 1.38117 * 120.06955 * 179.97438 * 3 2 1 5 5 C 1.38876 * 119.92761 * 359.97438 * 4 3 2 6 6 N 1.39925 * 120.06741 * 179.97438 * 5 4 3 7 7 C 1.46501 * 119.99873 * 7.09261 * 6 5 4 8 8 C 1.50699 * 109.46910 * 269.99178 * 7 6 5 9 9 H 1.08010 * 119.99895 * 0.02562 * 8 7 6 10 10 C 1.37870 * 120.00144 * 180.02562 * 8 7 6 11 11 N 1.31514 * 120.00107 * 0.02562 * 10 8 7 12 12 Si 1.86804 * 120.00032 * 180.02562 * 10 8 7 13 13 H 1.48506 * 109.47065 * 269.99886 * 12 10 8 14 14 H 1.48497 * 109.47146 * 30.00038 * 12 10 8 15 15 H 1.48500 * 109.47198 * 149.99967 * 12 10 8 16 16 C 1.34777 * 119.99774 * 187.08614 * 6 5 4 17 17 O 1.21287 * 119.99982 * 354.87369 * 16 6 5 18 18 C 1.50698 * 119.99879 * 174.87927 * 16 6 5 19 19 H 1.09001 * 110.45990 * 29.08461 * 18 16 6 20 20 C 1.54510 * 110.51041 * 151.68935 * 18 16 6 21 21 C 1.54476 * 104.06330 * 118.64680 * 20 18 16 22 22 O 1.44422 * 104.80403 * 23.97648 * 21 20 18 23 23 C 1.44649 * 105.36901 * 319.56406 * 22 21 20 24 24 C 1.38871 * 119.85979 * 0.27405 * 5 4 3 25 25 C 1.38117 * 119.92641 * 359.46999 * 24 5 4 26 26 H 1.09003 * 109.47197 * 90.00369 * 1 2 3 27 27 H 1.09001 * 109.47014 * 209.99871 * 1 2 3 28 28 H 1.09001 * 109.47440 * 330.00441 * 1 2 3 29 29 H 1.07995 * 119.96338 * 359.97298 * 3 2 1 30 30 H 1.07995 * 120.03407 * 179.97438 * 4 3 2 31 31 H 1.08997 * 109.47101 * 150.00108 * 7 6 5 32 32 H 1.08997 * 109.47433 * 29.99382 * 7 6 5 33 33 H 0.97000 * 119.99916 * 359.97438 * 11 10 8 34 34 H 1.09004 * 110.50957 * 237.29126 * 20 18 16 35 35 H 1.08992 * 110.51170 * 359.97438 * 20 18 16 36 36 H 1.08997 * 110.37359 * 142.81162 * 21 20 18 37 37 H 1.09005 * 110.36947 * 265.14867 * 21 20 18 38 38 H 1.08996 * 110.34538 * 281.59453 * 23 22 21 39 39 H 1.08999 * 110.50408 * 159.18111 * 23 22 21 40 40 H 1.07997 * 120.03416 * 179.70959 * 24 5 4 41 41 H 1.08008 * 119.95807 * 180.25740 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1969 1.1985 0.0000 4 6 3.5781 1.2019 0.0005 5 6 4.2739 0.0001 0.0016 6 7 5.6732 0.0002 0.0016 7 6 6.4056 1.2594 0.1571 8 6 6.6569 1.8652 -1.1996 9 1 6.3057 1.3626 -2.0889 10 6 7.3350 3.0609 -1.3059 11 7 7.7631 3.6725 -0.2232 12 14 7.6458 3.8121 -2.9877 13 1 8.9405 3.3160 -3.5199 14 1 6.5499 3.4261 -3.9125 15 1 7.6943 5.2915 -2.8678 16 6 6.3471 -1.1582 -0.1413 17 8 5.7443 -2.2101 -0.1766 18 6 7.8495 -1.1465 -0.2573 19 1 8.2662 -0.2924 0.2765 20 6 8.4446 -2.4658 0.2838 21 6 9.1620 -3.0827 -0.9373 22 8 9.4518 -1.9615 -1.8002 23 6 8.2777 -1.1187 -1.7413 24 6 3.5781 -1.2017 -0.0036 25 6 2.1970 -1.1983 0.0012 26 1 -0.3634 -0.0001 -1.0277 27 1 -0.3633 -0.8900 0.5138 28 1 -0.3634 0.8900 0.5138 29 1 1.6551 2.1327 -0.0004 30 1 4.1163 2.1382 0.0001 31 1 7.3580 1.0671 0.6511 32 1 5.8165 1.9503 0.7601 33 1 7.6013 3.2826 0.6501 34 1 9.1572 -2.2637 1.0835 35 1 7.6521 -3.1262 0.6355 36 1 10.0854 -3.5719 -0.6277 37 1 8.5071 -3.7919 -1.4437 38 1 7.4872 -1.5255 -2.3719 39 1 8.5222 -0.1013 -2.0466 40 1 4.1164 -2.1380 -0.0075 41 1 1.6553 -2.1327 0.0014 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000263876518.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:09 Heat of formation + Delta-G solvation = -48.012854 kcal Electronic energy + Delta-G solvation = -23592.342329 eV Core-core repulsion = 20244.415854 eV Total energy + Delta-G solvation = -3347.926476 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 2.87 seconds Orbital eigenvalues (eV) -40.66110 -38.96702 -37.71522 -35.67530 -33.18858 -32.26718 -31.13380 -30.42446 -29.01148 -27.26434 -26.05382 -23.48928 -23.19344 -22.22891 -21.98535 -20.56660 -18.92988 -17.40933 -17.33038 -16.41248 -15.93363 -15.51554 -15.15496 -14.79309 -14.49174 -14.02592 -13.86862 -13.75911 -13.44914 -13.42443 -13.01185 -12.78032 -12.53300 -12.03086 -11.99673 -11.80786 -11.63582 -11.51810 -11.20532 -11.07829 -10.98075 -10.81529 -10.55295 -10.40178 -10.26168 -9.97380 -9.58522 -8.85917 -8.80525 -8.61369 -8.43751 -7.23387 -6.64361 -4.43493 1.70992 1.91661 2.98745 3.31643 3.34136 3.42787 3.50316 4.20066 4.30097 4.34875 4.78900 4.91453 5.05098 5.07483 5.23553 5.25276 5.32494 5.45184 5.49265 5.53108 5.61686 5.75167 5.83382 5.88561 5.96933 5.99257 6.04054 6.08590 6.16916 6.19643 6.33419 6.39418 6.58200 6.64340 6.86147 6.87068 6.97049 7.05707 7.15328 7.62307 7.69089 7.85012 8.20355 8.49555 8.57446 9.27060 10.70863 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.010826 B = 0.007267 C = 0.004752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2585.662244 B = 3852.182072 C = 5891.059929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.129 4.129 3 C -0.103 4.103 4 C -0.139 4.139 5 C 0.161 3.839 6 N -0.527 5.527 7 C 0.216 3.784 8 C -0.618 4.618 9 H 0.059 0.941 10 C 0.030 3.970 11 N -0.899 5.899 12 Si 1.067 2.933 13 H -0.283 1.283 14 H -0.286 1.286 15 H -0.282 1.282 16 C 0.527 3.473 17 O -0.541 6.541 18 C -0.137 4.137 19 H 0.113 0.887 20 C -0.144 4.144 21 C 0.047 3.953 22 O -0.375 6.375 23 C 0.071 3.929 24 C -0.176 4.176 25 C -0.107 4.107 26 H 0.062 0.938 27 H 0.059 0.941 28 H 0.059 0.941 29 H 0.118 0.882 30 H 0.136 0.864 31 H 0.037 0.963 32 H 0.037 0.963 33 H 0.269 0.731 34 H 0.077 0.923 35 H 0.090 0.910 36 H 0.089 0.911 37 H 0.059 0.941 38 H 0.058 0.942 39 H 0.116 0.884 40 H 0.179 0.821 41 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.883 -8.163 1.337 9.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.130 4.130 3 C -0.122 4.122 4 C -0.160 4.160 5 C 0.066 3.934 6 N -0.244 5.244 7 C 0.097 3.903 8 C -0.656 4.656 9 H 0.077 0.923 10 C -0.176 4.176 11 N -0.534 5.534 12 Si 0.894 3.106 13 H -0.209 1.209 14 H -0.212 1.212 15 H -0.207 1.207 16 C 0.318 3.682 17 O -0.422 6.422 18 C -0.158 4.158 19 H 0.131 0.869 20 C -0.182 4.182 21 C -0.030 4.030 22 O -0.294 6.294 23 C -0.006 4.006 24 C -0.196 4.196 25 C -0.126 4.126 26 H 0.080 0.920 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.136 0.864 30 H 0.154 0.846 31 H 0.054 0.946 32 H 0.055 0.945 33 H 0.079 0.921 34 H 0.096 0.904 35 H 0.109 0.891 36 H 0.107 0.893 37 H 0.077 0.923 38 H 0.076 0.924 39 H 0.134 0.866 40 H 0.195 0.805 41 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -4.202 -7.330 0.443 8.461 hybrid contribution -0.946 -0.997 0.913 1.650 sum -5.148 -8.327 1.356 9.883 Atomic orbital electron populations 1.20670 0.91964 1.01921 1.01569 1.19804 0.95524 0.93485 1.04170 1.20742 0.93409 0.97148 1.00899 1.21079 0.94089 0.97612 1.03181 1.18071 0.82559 0.94329 0.98451 1.45794 1.04149 1.09675 1.64830 1.19823 0.91584 0.79794 0.99089 1.22203 1.41681 1.09805 0.91960 0.92291 1.25792 0.93008 0.93889 1.04922 1.70822 1.43156 1.40566 0.98811 0.83547 0.76654 0.76610 0.73771 1.20935 1.21224 1.20710 1.20420 0.89868 0.82665 0.75261 1.90235 1.68454 1.31893 1.51570 1.22657 0.92154 1.00821 1.00159 0.86894 1.22953 1.00656 0.95756 0.98830 1.23376 0.99790 0.89918 0.89923 1.89147 1.38042 1.34784 1.67427 1.23320 0.87583 0.96984 0.92737 1.22738 0.94394 1.00171 1.02253 1.20907 0.93958 0.96845 1.00879 0.91950 0.92231 0.92158 0.86435 0.84593 0.94550 0.94547 0.92071 0.90425 0.89139 0.89287 0.92260 0.92353 0.86599 0.80488 0.86722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.23 10.01 36.00 0.36 -0.87 16 2 C -0.13 -2.02 5.88 -104.59 -0.62 -2.63 16 3 C -0.10 -1.74 9.69 -39.61 -0.38 -2.12 16 4 C -0.14 -2.74 9.15 -39.39 -0.36 -3.10 16 5 C 0.16 3.33 6.49 -83.69 -0.54 2.79 16 6 N -0.53 -11.10 2.68 -114.74 -0.31 -11.41 16 7 C 0.22 4.85 3.56 -5.19 -0.02 4.83 16 8 C -0.62 -15.17 9.01 -34.44 -0.31 -15.48 16 9 H 0.06 1.51 7.81 -52.48 -0.41 1.10 16 10 C 0.03 0.77 5.46 -17.82 -0.10 0.67 16 11 N -0.90 -24.24 13.65 55.43 0.76 -23.48 16 12 Si 1.07 23.25 29.90 -169.99 -5.08 18.17 16 13 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 14 H -0.29 -6.08 7.11 56.52 0.40 -5.68 16 15 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 16 C 0.53 10.51 6.60 -10.99 -0.07 10.44 16 17 O -0.54 -11.08 12.13 5.55 0.07 -11.02 16 18 C -0.14 -2.43 2.97 -90.20 -0.27 -2.70 16 19 H 0.11 2.09 5.85 -51.93 -0.30 1.78 16 20 C -0.14 -2.12 6.60 -25.16 -0.17 -2.28 16 21 C 0.05 0.66 7.64 37.93 0.29 0.95 16 22 O -0.38 -6.50 11.65 -35.23 -0.41 -6.91 16 23 C 0.07 1.28 7.19 37.93 0.27 1.55 16 24 C -0.18 -3.39 9.05 -39.39 -0.36 -3.75 16 25 C -0.11 -1.78 9.69 -39.61 -0.38 -2.16 16 26 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.06 0.62 8.08 -51.93 -0.42 0.20 16 28 H 0.06 0.64 8.08 -51.93 -0.42 0.22 16 29 H 0.12 1.70 8.06 -52.49 -0.42 1.27 16 30 H 0.14 2.83 6.27 -52.49 -0.33 2.51 16 31 H 0.04 0.82 5.77 -51.93 -0.30 0.52 16 32 H 0.04 0.85 6.39 -51.93 -0.33 0.52 16 33 H 0.27 7.12 7.22 -40.82 -0.29 6.83 16 34 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.09 1.35 6.89 -51.93 -0.36 1.00 16 36 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 37 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.06 1.07 7.86 -51.93 -0.41 0.66 16 39 H 0.12 2.24 7.87 -51.93 -0.41 1.83 16 40 H 0.18 3.55 4.53 -56.22 -0.25 3.30 16 41 H 0.11 1.60 8.06 -52.48 -0.42 1.18 16 LS Contribution 331.67 15.07 5.00 5.00 Total: -1.00 -27.62 331.67 -8.20 -35.82 By element: Atomic # 1 Polarization: 13.27 SS G_CDS: -5.57 Total: 7.70 kcal Atomic # 6 Polarization: -11.22 SS G_CDS: -2.65 Total: -13.87 kcal Atomic # 7 Polarization: -35.34 SS G_CDS: 0.45 Total: -34.89 kcal Atomic # 8 Polarization: -17.58 SS G_CDS: -0.34 Total: -17.93 kcal Atomic # 14 Polarization: 23.25 SS G_CDS: -5.08 Total: 18.17 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -27.62 -8.20 -35.82 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263876518.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.193 kcal (2) G-P(sol) polarization free energy of solvation -27.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.87 seconds