Wall clock time and date at job start Tue Mar 31 2020 06:35:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38289 * 119.92670 * 2 1 4 4 C 1.38117 * 120.06955 * 179.97438 * 3 2 1 5 5 C 1.38876 * 119.92761 * 359.97438 * 4 3 2 6 6 N 1.39925 * 120.06741 * 179.97438 * 5 4 3 7 7 C 1.46501 * 119.99873 * 7.09261 * 6 5 4 8 8 C 1.50699 * 109.46910 * 269.99178 * 7 6 5 9 9 H 1.08010 * 119.99895 * 0.02562 * 8 7 6 10 10 C 1.37870 * 120.00144 * 180.02562 * 8 7 6 11 11 N 1.31514 * 120.00107 * 0.02562 * 10 8 7 12 12 Si 1.86804 * 120.00032 * 180.02562 * 10 8 7 13 13 H 1.48506 * 109.47065 * 269.99886 * 12 10 8 14 14 H 1.48497 * 109.47146 * 30.00038 * 12 10 8 15 15 H 1.48500 * 109.47198 * 149.99967 * 12 10 8 16 16 C 1.34777 * 119.99774 * 187.08614 * 6 5 4 17 17 O 1.21287 * 119.99982 * 354.87369 * 16 6 5 18 18 C 1.50698 * 119.99879 * 174.87927 * 16 6 5 19 19 H 1.09001 * 110.45990 * 29.08461 * 18 16 6 20 20 C 1.54510 * 110.51041 * 151.68935 * 18 16 6 21 21 C 1.54476 * 104.06330 * 118.64680 * 20 18 16 22 22 O 1.44422 * 104.80403 * 23.97648 * 21 20 18 23 23 C 1.44649 * 105.36901 * 319.56406 * 22 21 20 24 24 C 1.38871 * 119.85979 * 0.27405 * 5 4 3 25 25 C 1.38117 * 119.92641 * 359.46999 * 24 5 4 26 26 H 1.09003 * 109.47197 * 90.00369 * 1 2 3 27 27 H 1.09001 * 109.47014 * 209.99871 * 1 2 3 28 28 H 1.09001 * 109.47440 * 330.00441 * 1 2 3 29 29 H 1.07995 * 119.96338 * 359.97298 * 3 2 1 30 30 H 1.07995 * 120.03407 * 179.97438 * 4 3 2 31 31 H 1.08997 * 109.47101 * 150.00108 * 7 6 5 32 32 H 1.08997 * 109.47433 * 29.99382 * 7 6 5 33 33 H 0.97000 * 119.99916 * 359.97438 * 11 10 8 34 34 H 1.09004 * 110.50957 * 237.29126 * 20 18 16 35 35 H 1.08992 * 110.51170 * 359.97438 * 20 18 16 36 36 H 1.08997 * 110.37359 * 142.81162 * 21 20 18 37 37 H 1.09005 * 110.36947 * 265.14867 * 21 20 18 38 38 H 1.08996 * 110.34538 * 281.59453 * 23 22 21 39 39 H 1.08999 * 110.50408 * 159.18111 * 23 22 21 40 40 H 1.07997 * 120.03416 * 179.70959 * 24 5 4 41 41 H 1.08008 * 119.95807 * 180.25740 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1969 1.1985 0.0000 4 6 3.5781 1.2019 0.0005 5 6 4.2739 0.0001 0.0016 6 7 5.6732 0.0002 0.0016 7 6 6.4056 1.2594 0.1571 8 6 6.6569 1.8652 -1.1996 9 1 6.3057 1.3626 -2.0889 10 6 7.3350 3.0609 -1.3059 11 7 7.7631 3.6725 -0.2232 12 14 7.6458 3.8121 -2.9877 13 1 8.9405 3.3160 -3.5199 14 1 6.5499 3.4261 -3.9125 15 1 7.6943 5.2915 -2.8678 16 6 6.3471 -1.1582 -0.1413 17 8 5.7443 -2.2101 -0.1766 18 6 7.8495 -1.1465 -0.2573 19 1 8.2662 -0.2924 0.2765 20 6 8.4446 -2.4658 0.2838 21 6 9.1620 -3.0827 -0.9373 22 8 9.4518 -1.9615 -1.8002 23 6 8.2777 -1.1187 -1.7413 24 6 3.5781 -1.2017 -0.0036 25 6 2.1970 -1.1983 0.0012 26 1 -0.3634 -0.0001 -1.0277 27 1 -0.3633 -0.8900 0.5138 28 1 -0.3634 0.8900 0.5138 29 1 1.6551 2.1327 -0.0004 30 1 4.1163 2.1382 0.0001 31 1 7.3580 1.0671 0.6511 32 1 5.8165 1.9503 0.7601 33 1 7.6013 3.2826 0.6501 34 1 9.1572 -2.2637 1.0835 35 1 7.6521 -3.1262 0.6355 36 1 10.0854 -3.5719 -0.6277 37 1 8.5071 -3.7919 -1.4437 38 1 7.4872 -1.5255 -2.3719 39 1 8.5222 -0.1013 -2.0466 40 1 4.1164 -2.1380 -0.0075 41 1 1.6553 -2.1327 0.0014 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000263876518.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:09 Heat of formation + Delta-G solvation = -62.479575 kcal Electronic energy + Delta-G solvation = -23592.969654 eV Core-core repulsion = 20244.415854 eV Total energy + Delta-G solvation = -3348.553800 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.18563 -40.33057 -39.12137 -37.32729 -34.99566 -33.71001 -32.43885 -31.84221 -30.29470 -29.03226 -27.37675 -25.35010 -24.59357 -23.53605 -23.41349 -21.94504 -20.47236 -19.22386 -18.81258 -18.07843 -17.26251 -16.89693 -16.62279 -16.17520 -15.98888 -15.68086 -15.38555 -15.18183 -15.04013 -14.52873 -14.40361 -14.33294 -13.98935 -13.62069 -13.28922 -13.16950 -13.05522 -12.97385 -12.60848 -12.60331 -12.47380 -12.20956 -11.99639 -11.94388 -11.75944 -11.60174 -10.90657 -10.63865 -10.59368 -10.30063 -9.85767 -8.84732 -8.58689 -6.47523 0.28199 0.49490 1.44656 1.54600 1.58674 1.76344 1.88728 2.50111 2.86145 2.90242 3.09160 3.38433 3.51885 3.75288 3.90335 4.02234 4.05921 4.15737 4.20493 4.26327 4.36890 4.41709 4.53689 4.59629 4.69840 4.74740 4.76838 4.80266 4.87919 4.89476 4.94813 5.00266 5.15074 5.17545 5.38573 5.48779 5.65677 5.66941 5.68408 5.75110 6.01119 6.23377 6.36407 6.48477 6.97308 7.28637 8.67069 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.010826 B = 0.007267 C = 0.004752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2585.662244 B = 3852.182072 C = 5891.059929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.119 4.119 3 C -0.104 4.104 4 C -0.159 4.159 5 C 0.128 3.872 6 N -0.534 5.534 7 C 0.230 3.770 8 C -0.610 4.610 9 H 0.044 0.956 10 C -0.009 4.009 11 N -0.923 5.923 12 Si 1.104 2.896 13 H -0.271 1.271 14 H -0.279 1.279 15 H -0.282 1.282 16 C 0.522 3.478 17 O -0.548 6.548 18 C -0.137 4.137 19 H 0.102 0.898 20 C -0.137 4.137 21 C 0.045 3.955 22 O -0.387 6.387 23 C 0.077 3.923 24 C -0.190 4.190 25 C -0.106 4.106 26 H 0.076 0.924 27 H 0.077 0.923 28 H 0.074 0.926 29 H 0.142 0.858 30 H 0.113 0.887 31 H 0.036 0.964 32 H 0.023 0.977 33 H 0.261 0.739 34 H 0.098 0.902 35 H 0.089 0.911 36 H 0.123 0.877 37 H 0.065 0.935 38 H 0.052 0.948 39 H 0.098 0.902 40 H 0.169 0.831 41 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.203 -9.288 1.039 11.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.120 4.120 3 C -0.122 4.122 4 C -0.179 4.179 5 C 0.033 3.967 6 N -0.252 5.252 7 C 0.110 3.890 8 C -0.648 4.648 9 H 0.063 0.937 10 C -0.210 4.210 11 N -0.559 5.559 12 Si 0.927 3.073 13 H -0.196 1.196 14 H -0.204 1.204 15 H -0.207 1.207 16 C 0.314 3.686 17 O -0.430 6.430 18 C -0.159 4.159 19 H 0.120 0.880 20 C -0.175 4.175 21 C -0.031 4.031 22 O -0.305 6.305 23 C 0.000 4.000 24 C -0.209 4.209 25 C -0.124 4.124 26 H 0.095 0.905 27 H 0.096 0.904 28 H 0.093 0.907 29 H 0.160 0.840 30 H 0.131 0.869 31 H 0.054 0.946 32 H 0.041 0.959 33 H 0.071 0.929 34 H 0.117 0.883 35 H 0.107 0.893 36 H 0.141 0.859 37 H 0.083 0.917 38 H 0.070 0.930 39 H 0.116 0.884 40 H 0.185 0.815 41 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -5.536 -8.481 0.152 10.129 hybrid contribution -0.661 -0.716 1.038 1.424 sum -6.198 -9.197 1.190 11.154 Atomic orbital electron populations 1.20751 0.88509 1.03659 1.02959 1.20278 0.97913 0.92397 1.01440 1.21074 0.92292 0.99045 0.99813 1.21050 0.95509 0.96397 1.04984 1.18383 0.82419 0.95368 1.00528 1.45772 1.04690 1.09319 1.65458 1.19501 0.91360 0.80328 0.97818 1.22255 1.40736 1.09536 0.92281 0.93749 1.26868 0.92720 0.94485 1.06895 1.70910 1.44837 1.41209 0.98959 0.83057 0.77324 0.75957 0.70952 1.19592 1.20412 1.20702 1.20770 0.90678 0.82284 0.74892 1.90227 1.68890 1.31862 1.51987 1.22674 0.90769 1.02317 1.00091 0.88021 1.22973 1.00938 0.93824 0.99719 1.23624 1.01571 0.88977 0.88975 1.89131 1.37473 1.35677 1.68267 1.23099 0.87787 0.96323 0.92783 1.22733 0.95766 0.99117 1.03276 1.21277 0.92947 0.98707 0.99457 0.90541 0.90392 0.90663 0.83983 0.86882 0.94645 0.95868 0.92898 0.88303 0.89261 0.85924 0.91707 0.93021 0.88421 0.81457 0.83698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.98 10.01 71.24 0.71 -1.27 16 2 C -0.12 -3.43 5.88 -19.84 -0.12 -3.54 16 3 C -0.10 -3.37 9.69 22.25 0.22 -3.15 16 4 C -0.16 -6.40 9.15 22.39 0.20 -6.19 16 5 C 0.13 5.41 6.49 38.15 0.25 5.66 16 6 N -0.53 -23.39 2.68 -635.31 -1.70 -25.10 16 7 C 0.23 10.81 3.56 85.63 0.30 11.11 16 8 C -0.61 -30.96 9.01 25.60 0.23 -30.73 16 9 H 0.04 2.35 7.81 -2.91 -0.02 2.33 16 10 C -0.01 -0.44 5.46 84.65 0.46 0.02 16 11 N -0.92 -50.96 13.65 21.44 0.29 -50.67 16 12 Si 1.10 47.21 29.90 68.60 2.05 49.26 16 13 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 14 H -0.28 -11.46 7.11 99.48 0.71 -10.76 16 15 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 16 C 0.52 21.35 6.60 87.66 0.58 21.93 16 17 O -0.55 -22.77 12.13 -3.05 -0.04 -22.81 16 18 C -0.14 -4.95 2.97 -10.52 -0.03 -4.98 16 19 H 0.10 3.88 5.85 -2.39 -0.01 3.86 16 20 C -0.14 -3.86 6.60 31.61 0.21 -3.65 16 21 C 0.04 1.17 7.64 72.48 0.55 1.72 16 22 O -0.39 -13.08 11.65 -148.98 -1.74 -14.81 16 23 C 0.08 2.86 7.19 72.48 0.52 3.38 16 24 C -0.19 -7.29 9.05 22.39 0.20 -7.08 16 25 C -0.11 -3.28 9.69 22.25 0.22 -3.07 16 26 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 27 H 0.08 1.27 8.08 -2.39 -0.02 1.25 16 28 H 0.07 1.27 8.08 -2.39 -0.02 1.25 16 29 H 0.14 3.81 8.06 -2.91 -0.02 3.79 16 30 H 0.11 4.98 6.27 -2.91 -0.02 4.96 16 31 H 0.04 1.67 5.77 -2.39 -0.01 1.66 16 32 H 0.02 1.15 6.39 -2.39 -0.02 1.14 16 33 H 0.26 14.36 7.22 -92.71 -0.67 13.69 16 34 H 0.10 2.37 8.14 -2.38 -0.02 2.35 16 35 H 0.09 2.57 6.89 -2.39 -0.02 2.56 16 36 H 0.12 2.41 8.14 -2.39 -0.02 2.39 16 37 H 0.06 1.64 8.14 -2.38 -0.02 1.62 16 38 H 0.05 1.95 7.86 -2.39 -0.02 1.93 16 39 H 0.10 3.92 7.87 -2.39 -0.02 3.90 16 40 H 0.17 6.76 4.53 -62.03 -0.28 6.48 16 41 H 0.15 3.57 8.06 -2.91 -0.02 3.55 16 Total: -1.00 -60.51 331.67 4.25 -56.26 By element: Atomic # 1 Polarization: 26.84 SS G_CDS: 0.87 Total: 27.71 kcal Atomic # 6 Polarization: -24.36 SS G_CDS: 4.51 Total: -19.84 kcal Atomic # 7 Polarization: -74.36 SS G_CDS: -1.41 Total: -75.77 kcal Atomic # 8 Polarization: -35.85 SS G_CDS: -1.77 Total: -37.62 kcal Atomic # 14 Polarization: 47.21 SS G_CDS: 2.05 Total: 49.26 kcal Total: -60.51 4.25 -56.26 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263876518.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.222 kcal (2) G-P(sol) polarization free energy of solvation -60.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds