Wall clock time and date at job start Tue Mar 31 2020 07:03:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50688 * 1 3 3 C 1.35157 * 125.48733 * 2 1 4 4 C 1.40319 * 107.20494 * 179.72203 * 3 2 1 5 5 C 1.37947 * 106.52837 * 0.40957 * 4 3 2 6 6 C 1.41605 * 126.10324 * 179.84546 * 5 4 3 7 7 C 1.35625 * 120.00195 * 179.71744 * 6 5 4 8 8 C 1.41548 * 120.00052 * 180.02562 * 7 6 5 9 9 O 1.21779 * 120.00298 * 359.97438 * 8 7 6 10 10 N 1.34780 * 120.00098 * 180.02562 * 8 7 6 11 11 C 1.46501 * 119.99998 * 180.02562 * 10 8 7 12 12 C 1.50704 * 109.46760 * 269.99260 * 11 10 8 13 13 H 1.08002 * 119.99985 * 0.02562 * 12 11 10 14 14 C 1.37877 * 119.99954 * 180.02562 * 12 11 10 15 15 N 1.31515 * 119.99995 * 180.02562 * 14 12 11 16 16 Si 1.86794 * 119.99929 * 0.02562 * 14 12 11 17 17 H 1.48507 * 109.47110 * 89.99866 * 16 14 12 18 18 H 1.48499 * 109.47496 * 209.99715 * 16 14 12 19 19 H 1.48495 * 109.47532 * 330.00302 * 16 14 12 20 20 C 1.46497 * 119.99987 * 359.97438 * 10 8 7 21 21 C 1.53003 * 109.47329 * 270.00533 * 20 10 8 22 22 C 1.53001 * 117.51964 * 116.28255 * 21 20 10 23 23 C 1.52999 * 60.00190 * 107.47982 * 22 21 20 24 24 O 1.34020 * 125.47952 * 179.97438 * 2 1 3 25 25 H 1.08998 * 109.47687 * 180.02562 * 1 2 3 26 26 H 1.09007 * 109.47197 * 300.00184 * 1 2 3 27 27 H 1.08999 * 109.47231 * 59.99861 * 1 2 3 28 28 H 1.07998 * 126.39244 * 359.97438 * 3 2 1 29 29 H 1.07999 * 126.73153 * 180.27829 * 4 3 2 30 30 H 1.07997 * 120.00114 * 359.72160 * 6 5 4 31 31 H 1.08005 * 119.99866 * 0.02562 * 7 6 5 32 32 H 1.08998 * 109.47531 * 29.99334 * 11 10 8 33 33 H 1.09000 * 109.47050 * 150.00101 * 11 10 8 34 34 H 0.97000 * 119.99728 * 179.97438 * 15 14 12 35 35 H 1.08999 * 109.47381 * 150.00018 * 20 10 8 36 36 H 1.09005 * 109.46933 * 30.00197 * 20 10 8 37 37 H 1.09002 * 115.54973 * 330.58039 * 21 20 10 38 38 H 1.09001 * 117.49733 * 214.97413 * 22 21 20 39 39 H 1.08995 * 117.49577 * 359.97438 * 22 21 20 40 40 H 1.09004 * 117.50150 * 252.51496 * 23 22 21 41 41 H 1.09004 * 117.49681 * 107.48417 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2915 1.1005 0.0000 4 6 3.6238 0.6603 0.0065 5 6 3.5817 -0.7185 0.0008 6 6 4.6997 -1.5875 0.0012 7 6 4.5144 -2.9310 0.0009 8 6 5.6320 -3.7996 0.0018 9 8 6.7600 -3.3406 0.0024 10 7 5.4478 -5.1348 0.0010 11 6 6.6046 -6.0338 0.0025 12 6 7.0034 -6.3416 -1.4179 13 1 6.4507 -5.9103 -2.2394 14 6 8.0737 -7.1738 -1.6685 15 7 8.4220 -7.4420 -2.9079 16 14 9.0291 -7.9202 -0.2475 17 1 8.4225 -9.2231 0.1267 18 1 10.4410 -8.1309 -0.6566 19 1 8.9833 -7.0004 0.9174 20 6 4.0909 -5.6870 -0.0003 21 6 3.6174 -5.8799 1.4417 22 6 2.4154 -5.0557 1.9073 23 6 2.2621 -6.5570 1.6557 24 8 2.2847 -1.0914 0.0005 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.9556 2.1269 -0.0004 29 1 4.5086 1.2796 0.0125 30 1 5.7000 -1.1804 0.0018 31 1 3.5140 -3.3381 -0.0001 32 1 7.4368 -5.5543 0.5178 33 1 6.3445 -6.9597 0.5155 34 1 9.1753 -8.0271 -3.0842 35 1 4.0903 -6.6481 -0.5146 36 1 3.4193 -4.9994 -0.5144 37 1 4.4018 -6.0823 2.1710 38 1 2.4091 -4.7157 2.9430 39 1 1.9621 -4.3754 1.1864 40 1 1.7077 -6.8647 0.7690 41 1 2.1549 -7.2048 2.5257 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264074013.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:03:07 Heat of formation + Delta-G solvation = 25.034552 kcal Electronic energy + Delta-G solvation = -22510.581139 eV Core-core repulsion = 19165.822236 eV Total energy + Delta-G solvation = -3344.758902 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.64841 -39.48186 -37.27420 -34.74320 -34.01816 -33.36561 -32.46524 -31.28337 -28.74900 -27.08990 -26.03601 -23.51460 -22.31796 -21.95419 -21.58146 -20.73663 -19.99604 -18.11010 -17.33469 -16.87054 -16.35619 -16.30733 -15.42320 -15.04520 -14.71005 -14.42705 -14.06068 -13.65871 -13.45454 -13.31579 -13.23119 -13.07109 -12.63531 -12.60140 -12.30958 -12.01727 -11.86781 -11.51217 -11.47278 -11.43215 -10.90548 -10.53516 -10.52550 -10.35373 -10.03385 -9.88776 -9.84202 -9.50646 -9.09023 -8.56638 -7.93477 -7.61645 -6.06038 -4.04553 0.58415 2.05353 2.75092 2.75948 3.29113 3.37116 3.41883 3.74483 3.97642 4.02543 4.42320 4.53017 4.72609 4.82297 4.90960 5.00963 5.01491 5.13062 5.14516 5.21892 5.26740 5.38344 5.49131 5.53058 5.61134 5.67949 5.71306 5.82593 5.94629 6.04030 6.05889 6.14388 6.15529 6.30726 6.40991 6.45704 6.73478 7.01058 7.04536 7.36934 7.63868 8.25737 8.49543 8.94248 9.00039 9.54246 11.07407 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.018688 B = 0.004073 C = 0.003571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1497.915755 B = 6872.902927 C = 7840.105591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C -0.006 4.006 3 C -0.215 4.215 4 C -0.174 4.174 5 C 0.008 3.992 6 C -0.021 4.021 7 C -0.179 4.179 8 C 0.539 3.461 9 O -0.544 6.544 10 N -0.583 5.583 11 C 0.215 3.785 12 C -0.527 4.527 13 H 0.075 0.925 14 C 0.072 3.928 15 N -0.898 5.898 16 Si 0.874 3.126 17 H -0.275 1.275 18 H -0.284 1.284 19 H -0.264 1.264 20 C 0.140 3.860 21 C -0.167 4.167 22 C -0.182 4.182 23 C -0.176 4.176 24 O -0.164 6.164 25 H 0.077 0.923 26 H 0.085 0.915 27 H 0.086 0.914 28 H 0.150 0.850 29 H 0.155 0.845 30 H 0.160 0.840 31 H 0.128 0.872 32 H 0.042 0.958 33 H 0.026 0.974 34 H 0.264 0.736 35 H 0.090 0.910 36 H 0.072 0.928 37 H 0.107 0.893 38 H 0.089 0.911 39 H 0.093 0.907 40 H 0.095 0.905 41 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.924 12.183 8.954 23.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.058 4.058 3 C -0.234 4.234 4 C -0.193 4.193 5 C -0.041 4.041 6 C -0.041 4.041 7 C -0.199 4.199 8 C 0.330 3.670 9 O -0.424 6.424 10 N -0.312 5.312 11 C 0.095 3.905 12 C -0.566 4.566 13 H 0.093 0.907 14 C -0.130 4.130 15 N -0.536 5.536 16 Si 0.701 3.299 17 H -0.201 1.201 18 H -0.210 1.210 19 H -0.188 1.188 20 C 0.016 3.984 21 C -0.187 4.187 22 C -0.219 4.219 23 C -0.213 4.213 24 O -0.061 6.061 25 H 0.096 0.904 26 H 0.104 0.896 27 H 0.104 0.896 28 H 0.167 0.833 29 H 0.172 0.828 30 H 0.177 0.823 31 H 0.146 0.854 32 H 0.060 0.940 33 H 0.044 0.956 34 H 0.074 0.926 35 H 0.109 0.891 36 H 0.090 0.910 37 H 0.125 0.875 38 H 0.108 0.892 39 H 0.111 0.889 40 H 0.114 0.886 41 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -17.274 11.965 8.834 22.794 hybrid contribution 0.565 -0.388 0.582 0.900 sum -16.708 11.577 9.417 22.403 Atomic orbital electron populations 1.20344 0.85092 1.04212 1.03572 1.22639 0.94125 0.84164 1.04843 1.21453 0.92781 0.99365 1.09768 1.22278 0.98338 0.93217 1.05499 1.19912 0.81834 0.93541 1.08819 1.20636 0.95313 0.92314 0.95842 1.22462 1.00057 0.94349 1.03069 1.16851 0.89075 0.82789 0.78318 1.90802 1.25262 1.75982 1.50363 1.47801 1.07095 1.05717 1.70616 1.19677 0.84207 0.88266 0.98388 1.21332 1.15132 1.28883 0.91250 0.90735 1.24849 0.96581 0.96006 0.95555 1.69898 1.28045 1.37006 1.18692 0.86867 0.79841 0.79835 0.83339 1.20109 1.20961 1.18811 1.21101 0.83664 1.00492 0.93176 1.22933 0.91733 1.04616 0.99378 1.23024 1.02776 0.93966 1.02101 1.22913 1.00037 0.95163 1.03232 1.84048 1.16455 1.34709 1.70843 0.90440 0.89609 0.89563 0.83267 0.82770 0.82293 0.85391 0.94001 0.95596 0.92589 0.89139 0.90981 0.87504 0.89205 0.88882 0.88648 0.88985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.47 10.41 36.00 0.37 -0.10 16 2 C -0.01 -0.07 7.30 -35.41 -0.26 -0.32 16 3 C -0.21 -2.18 10.76 -39.90 -0.43 -2.61 16 4 C -0.17 -2.02 10.90 -38.91 -0.42 -2.45 16 5 C 0.01 0.11 6.84 -38.40 -0.26 -0.15 16 6 C -0.02 -0.32 9.39 -39.23 -0.37 -0.69 16 7 C -0.18 -3.01 8.68 -39.26 -0.34 -3.35 16 8 C 0.54 11.52 7.44 -15.00 -0.11 11.41 16 9 O -0.54 -13.68 15.69 5.12 0.08 -13.60 16 10 N -0.58 -12.36 2.46 -178.49 -0.44 -12.80 16 11 C 0.22 5.35 4.23 -5.19 -0.02 5.33 16 12 C -0.53 -15.37 9.94 -34.44 -0.34 -15.71 16 13 H 0.07 2.38 8.06 -52.49 -0.42 1.96 16 14 C 0.07 2.13 5.47 -17.82 -0.10 2.03 16 15 N -0.90 -27.97 13.96 55.43 0.77 -27.20 16 16 Si 0.87 21.76 27.47 -169.99 -4.67 17.09 16 17 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 18 H -0.28 -7.04 7.11 56.52 0.40 -6.63 16 19 H -0.26 -6.41 6.54 56.52 0.37 -6.04 16 20 C 0.14 2.31 5.37 -4.04 -0.02 2.29 16 21 C -0.17 -2.33 6.01 -90.61 -0.54 -2.88 16 22 C -0.18 -2.10 9.86 -26.73 -0.26 -2.36 16 23 C -0.18 -1.97 10.25 -26.73 -0.27 -2.24 16 24 O -0.16 -2.15 10.18 4.67 0.05 -2.10 16 25 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.09 0.39 8.14 -51.92 -0.42 -0.03 16 27 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.15 1.11 8.06 -52.49 -0.42 0.69 16 29 H 0.15 1.47 8.06 -52.49 -0.42 1.05 16 30 H 0.16 2.42 7.46 -52.49 -0.39 2.02 16 31 H 0.13 1.90 4.78 -52.48 -0.25 1.65 16 32 H 0.04 1.12 6.48 -51.93 -0.34 0.78 16 33 H 0.03 0.61 7.50 -51.93 -0.39 0.22 16 34 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 35 H 0.09 1.55 8.07 -51.93 -0.42 1.13 16 36 H 0.07 1.06 5.82 -51.93 -0.30 0.76 16 37 H 0.11 1.62 8.14 -51.93 -0.42 1.19 16 38 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 39 H 0.09 1.03 7.41 -51.93 -0.38 0.64 16 40 H 0.10 0.99 8.14 -51.93 -0.42 0.56 16 41 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 LS Contribution 350.34 15.07 5.28 5.28 Total: -1.00 -34.70 350.34 -8.18 -42.88 By element: Atomic # 1 Polarization: 8.10 SS G_CDS: -5.87 Total: 2.23 kcal Atomic # 6 Polarization: -8.40 SS G_CDS: -3.39 Total: -11.79 kcal Atomic # 7 Polarization: -40.33 SS G_CDS: 0.34 Total: -39.99 kcal Atomic # 8 Polarization: -15.83 SS G_CDS: 0.13 Total: -15.71 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -4.67 Total: 17.09 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -34.70 -8.18 -42.88 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264074013.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.916 kcal (2) G-P(sol) polarization free energy of solvation -34.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.881 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds